association dataset threshold value standardized value NCI-H1781 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.54433 SK-MM-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.21083 Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BS-01A-21R-A26T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nfat5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 82.5225 NCI-H1915 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.23478 CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.948264 DorsalRootGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.91425 HCC1954 CCLE Cell Line Gene CNV Profiles 1.0 1.55223 NCIH1781 CCLE Cell Line Gene CNV Profiles -1.0 -1.51057 adult retina HPM Cell Type and Tissue Protein Expression Profiles 1.0 1.14787 Foxo3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 49.8242 CTCF_LNCaP clone FGC_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null cerebellar cortex_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.66644 HCC33 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.882587 CAMA-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.892642 H3K9me3_astrocyte_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null POLR2A_H54_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS-114 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 Ppara JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 35.9102 MAX_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null SMAD4-21741376-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null superior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.15383 DV-90 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 MZ in caudal cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.25037 OCI-AML3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 abnormality of the nervous system GWASdb SNP-Phenotype Associations 1.0 0.045037 IRF5 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.40249 NCI-H2444 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_14_TEAD4 Rummagene Transcription Factor Associations 2026 1.0 null orbital frontal cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -2.25537 HCC2218 CCLE Cell Line Gene CNV Profiles -1.0 -1.41808 GATA1 ChEA Transcription Factor Targets 1.0 null Stomach Smooth Muscle Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.04065 ATF3 ENCODE Transcription Factor Targets 1.0 null cerebellar cortex_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.979611 Colorectal Carcinoma DisGeNET Gene-Disease Associations 1.0 null primary auditory cortex (core)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.54381 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A23L-01A-11R-A16R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null LU-135 COSMIC Cell Line Gene Mutation Profiles 1.0 null central nervous system disease GWASdb SNP-Disease Associations 1.0 0.108656 PMC8104016-hcg-12-e002353-s006.xlsx-mTHP-1-LPS_Prom-Distal-RefSeq_Name_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null Bhlha15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 66.0744 Foxj3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 120.342 polysensory temporal cortex (area 22p) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06783 PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_14_TEAD4 Rummagene Transcription Factor Associations 2026 1.0 null BHLHE23 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.8162 MZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08438 NCIH810 CCLE Cell Line Gene CNV Profiles -1.0 -1.90039 primary auditory cortex (core)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.24993 ATN-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null atherosclerosis GWASdb SNP-Phenotype Associations 1.0 0.328755 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4723-01A-01R-1436-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PPP6R1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.50781 PMC9378714-41467_2022_31999_MOESM10_ESM.xlsx-Supplementary_Data_7-Supplementary_Data_7_Collation_of_genes_possible_regulated_or_co-expressed_with_ELF5_ELF5 Rummagene Transcription Factor Associations 2026 1.0 null prepositus hypoglossal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.829245 UACC-257 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908767 BDCA4+_DentriticCells BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.07772 MZ7-MEL COSMIC Cell Line Gene Mutation Profiles 1.0 null ZNF274-21170338-K562_HELA_HEPG2_GM12878-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null PMC6137307-mmc2.xlsx-IRF9-IFNa-Table_S1_IRF9-IFNa_Related_to_Figure_1_IRF9 Rummagene Transcription Factor Associations 2026 1.0 null GSE151612_0_v_11_pracinostat_human RummaGEO Drug Perturbation Signatures 1.0 null layer IIIa of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.94495 GSE192870_2_v_0_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null RUNX1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Targets 2022 1.0 null HCC95 CCLE Cell Line Gene CNV Profiles 1.0 1.83048 CAL-29 COSMIC Cell Line Gene Mutation Profiles 1.0 null NCI-H2126 COSMIC Cell Line Gene Mutation Profiles 1.0 null Runx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 119.549 CDKN1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49067 PMC12130324-44320_2025_98_MOESM4_ESM.pdf-2-CUX1_CUX1 Rummagene Transcription Factor Associations 2026 1.0 null TE-441-T COSMIC Cell Line Gene Mutation Profiles 1.0 null KG-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.86796 Dlx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.6273 TCF3/E2A-22897851-JUKARTE6-1-HUMAN ChEA Transcription Factor Targets 2022 1.0 null amygdaloid complex_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.05248 arteriosclerosis GWASdb SNP-Phenotype Associations 1.0 0.298964 Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MC-06A-12R-A18S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Foxl2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 96.1236 SNU216 CCLE Cell Line Gene CNV Profiles -1.0 -1.60298 PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.4009 Zfp961 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 47.6897 Sox5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 91.629 layer VI of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.36727 BHLHE40 ENCODE Transcription Factor Targets 1.0 null primary motor cortex (area M1, area 4)_13 pcw_M_12820 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.21703 Hoxa11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 47.1778 solitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.32608 RC-K8 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K27me3_Peripheral Blood Mononuclear Primary Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null MDA-MB-134-VI Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.22096 ELF5 ChEA Transcription Factor Targets 1.0 null cerebellar cortex_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.4665 hsa-miR-371b-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Sox7 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 119.748 posterior (caudal) superior temporal cortex (area 22c)_26 pcw_F_12949 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.0323 all GWASdb SNP-Phenotype Associations 1.0 0.033948 disease GWASdb SNP-Disease Associations 1.0 0.029176 Lung squamous cell carcinoma_LUSC_TCGA-34-5231-01A-21R-1820-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sox1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 204.104 Stat5a::Stat5b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.4224 59M CCLE Cell Line Gene CNV Profiles 1.0 2.10166 TP53BP1_KD_GSE54268_669_human_MCF-10A GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null VMRCRCW CCLE Cell Line Gene CNV Profiles -1.0 -1.67734 stratum radiatum of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.40994 CDK8_knockdown_161_GSE38061 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.60236 MTF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.1476 Prostate adenocarcinoma_PRAD_TCGA-KK-A6E7-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JS-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RMUG-S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.980523 Nr1h2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 60.9011 Rhox11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 35.5926 E2F1 JASPAR Predicted Transcription Factor Targets 1.0 null METTL8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.41421 Arid3a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 86.1111 pedunculo(pontine) tegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.27153 NB17 COSMIC Cell Line Gene Mutation Profiles 1.0 null DMS 53 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06493 Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-4075-01A-01R-1436-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UM-UC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67675 EGR1_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NHLH2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 72.0178 cerebellar cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.954322 hsa-miR-4760-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 Edinger-Westphal nucleus (accessory oculomotor nucleus) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.04352 hsa-miR-4724-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 primary motor cortex (area M1, area 4)_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.883696 KLF4-19829295-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null KP-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.831146 MAP4K3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.0307 POU3F2 ChEA Transcription Factor Targets 1.0 null Hand1::Tcf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 36.2069 posterior (caudal) superior temporal cortex (area 22c)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.16414 Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q1-06A-21R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null premotor cortex (area 6) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.20987 layer IIIu of area 35r Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.15306 Thyroid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.964451 NR1H3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.65388 hsa-miR-3182 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 Nfatc1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 64.76 HCT-15 COSMIC Cell Line Gene Mutation Profiles 1.0 null Ahr::Arnt JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 19.5 PFEIFFER CCLE Cell Line Gene CNV Profiles -1.0 -1.45054 THP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 IZ in posteroinferior (ventral) parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.16436 inferolateral temporal cortex (area TEv, area 20)_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.960832 Six4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 76.7511 hsa-miR-3978 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 HES3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.64922 GSE135350_3_v_1_dexamethasone_human RummaGEO Drug Perturbation Signatures 1.0 null OCIM1 CCLE Cell Line Gene CNV Profiles 1.0 1.95221 PrefrontalCortex BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.877362 Nkx3-1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 53.9362 CAR-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.900678 cholesterol, hdl GAD Gene-Disease Associations 1.0 null C32 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.26476 BHLHE40 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.4593 TNFRSF18 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.14957 PMC11426526-ppat.1012555.s014.xlsx-DEG_DC_C91-PL_LPS_vs_DC_Jurkat-Unnamed_5_IRF6 Rummagene Transcription Factor Associations 2026 1.0 null Isl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 65.0859 HCC33 CCLE Cell Line Gene CNV Profiles -1.0 -1.47303 anterior amygdaloid area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.01124 HT-29 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.93053 primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.59782 NCI-H2066 COSMIC Cell Line Gene Mutation Profiles 1.0 null layer II of piriform cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.87589 HCC2935 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28797 Alx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 118.977 Tbx6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 55.4626 CHPF CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.76109 TFAP4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.50023 NOS-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 IZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.03124 lateral subdivision of area 9 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.79533 IDH3G CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78144 amygdaloid complex_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.835316 coronary artery calcification GWASdb SNP-Phenotype Associations 1.0 0.903602 abnormality of the coronary arteries GWASdb SNP-Phenotype Associations 1.0 0.405515 core of nucleus accumbens Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.945019 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LH-01A-21R-A213-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sox11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 70.3424 ES7 COSMIC Cell Line Gene Mutation Profiles 1.0 null Nkx2-1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 50.617 NCI-H2452 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.882587 TTLL13 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.42308 primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.01941 Stat5a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 88.1872 CX-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.93053 layer IIIu of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.982972 PMC3432194__F2 PFOCR Pathway Figure Associations 2024 1.0 null organelle LOCATE Predicted Protein Localization Annotations 1.0 null dorsolateral prefrontal cortex_13 pcw_M_12888 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.74916 cerebellar cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.08908 NCIH1876 CCLE Cell Line Gene CNV Profiles 1.0 1.57483 HCC4006 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.980523 JHH-2 COSMIC Cell Line Gene Mutation Profiles 1.0 null dexamethasone_homo sapiens_gpl6244_gse20963 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-BI-A0VS-01A-11R-A10U-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NFIC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 55.6483 hsa-miR-664 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LA-01A-11R-A18C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 786-O Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.980025 occipital neocortex_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.36289 Lhx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 178.9 HUP-T3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.980523 SG in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.853088 NCI-H196 COSMIC Cell Line Gene Mutation Profiles 1.0 null TBC1D23 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.12959 Spi1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 120.161 PRDM1 JASPAR Predicted Transcription Factor Targets 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2828-03A-01T-0734-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Sox17 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 110.205 inner CP in rostral perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.26841 TE4 CCLE Cell Line Gene CNV Profiles -1.0 -1.44544 NFKB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.9608 HEL Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16912 SP in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.896284 primary motor cortex (area M1, area 4)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.50213 Dlx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 52.692 Arid3b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 83.1799 GABRD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.48147 SLC25A32 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.72709 DOK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.00736 CP66-MEL COSMIC Cell Line Gene Mutation Profiles 1.0 null Hic1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 49.2993 NCI-H1694 COSMIC Cell Line Gene Mutation Profiles 1.0 null PACSIN2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.76624 ventrolateral prefrontal cortex_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.924863 MINPP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.15663 posterior (caudal) superior temporal cortex (area 22c)_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.15289 ZNF274 ChEA Transcription Factor Targets 1.0 null CYFIP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.45773 hsa-miR-4686 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 subgranular zone of caudal dentate gyrus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.991296 H3K27me3_SK-N-SH_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.861458 OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.40035 PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-ENSEMBL_AR Rummagene Transcription Factor Associations 2026 1.0 null Cholesterol, HDL dbGAP Gene-Trait Associations 1.0 0.319584 HOP-92 COSMIC Cell Line Gene Mutation Profiles 1.0 null VZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.23494 layer II of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.98695 EFM19 CCLE Cell Line Gene CNV Profiles -1.0 -1.66797 ACOT1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.52265 HCC2998 COSMIC Cell Line Gene Mutation Profiles 1.0 null HEY2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.152 NCI-H23 COSMIC Cell Line Gene Mutation Profiles 1.0 null GABPA_01_191 KnockTF Gene Expression Profiles with Transcription Factor Perturbations 1.0 9.97805 Uterine Carcinosarcoma_UCS_TCGA-N5-A4RA-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null EI24 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.66064 HCC1954 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.36302 CHAGOK1 CCLE Cell Line Gene CNV Profiles 1.0 3.2803 Brain Lower Grade Glioma_LGG_TCGA-HT-7485-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null DGKD CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.0668 coronary artery disease GWASdb SNP-Disease Associations 1.0 0.417528 CTCF ENCODE Transcription Factor Targets 1.0 null GSE151612_4_v_8_pracinostat_human RummaGEO Drug Perturbation Signatures -1.0 null PBX1-22567123-OVCAR3-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null OCI-AML5 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03746 Hoxd13 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 68.9548 NCIH1648 CCLE Cell Line Gene CNV Profiles 1.0 1.59798 cardiovascular system disease GWASdb SNP-Disease Associations 1.0 0.069195 NPY5R CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.35807 SCLC-22H Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.16629 Prdm15 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 48.903 SNU-216 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28797 PMC3441782__F6 PFOCR Pathway Figure Associations 2024 1.0 null primary motor cortex (area M1, area 4)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.01249 TE-1 COSMIC Cell Line Gene CNV Profiles -1.0 -3.18157 Crx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 26.375 SU-DHL-6 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.09224 CHAGO-K-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 MEG-01 COSMIC Cell Line Gene Mutation Profiles 1.0 null inferolateral temporal cortex (area TEv, area 20)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.16146 Lung adenocarcinoma_LUAD_TCGA-38-4630-01A-01R-1206-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.36826 HCC2688 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.701 primary auditory cortex (core)_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.908318 KG1 CCLE Cell Line Gene CNV Profiles 1.0 1.7007 hsa-miR-4473 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 SUPT6H CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68747 Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49A-01A-11R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Lung adenocarcinoma_LUAD_TCGA-05-4389-01A-01R-1206-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCRT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.0004 inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.03465 striatum_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.02828 Gfi1b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 44.6258 Prdm14 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 35.0355 Msx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 56.6588 SMAD4 ChEA Transcription Factor Targets 1.0 null Ankyrin repeat InterPro Predicted Protein Domain Annotations 1.0 null KU812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.29126 SW 1573 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.948751 RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28847 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45Z-01A-21R-A24Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nanog JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 48.2379 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4967-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 56.8257 Nr1h4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 61.5959 NCI-H322M COSMIC Cell Line Gene Mutation Profiles 1.0 null Mafb JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 65.1298 DMS-53 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 MFM-223 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.881151 NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.47229 cell part LOCATE Predicted Protein Localization Annotations 1.0 null IM-95M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 pituitary GTEx Tissue Gene Expression Profiles 1.0 1.05358 amygdaloid complex_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.32468 PMC7378211-41598_2020_69015_MOESM3_ESM.xlsx-EWS-WT1_rep1_testp-7_annotatedp-ID_WT1 Rummagene Transcription Factor Associations 2026 1.0 null SOX10 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.26238 JIMT-1 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 striatum_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.877999 CTCF_LNCaP clone FGC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_1_AR Rummagene Transcription Factor Associations 2026 1.0 null UNCX CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.03863 Zbtb2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 39.6712 cardiovascular calcification GWASdb SNP-Phenotype Associations 1.0 0.36125 Bach1::Mafk JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 98.7719 Irf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 154.231 MYOG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.2626 PFEIFFER Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.38729 Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A6T5-01A-11R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCLC-21H Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09 Smad4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 45.778 primary visual cortex (striate cortex, area V1/17)_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.975432 hsa-miR-3140-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 periaqueductal gray substance, ventral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.07366 IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.878155 OAW28 CCLE Cell Line Gene CNV Profiles 1.0 2.12576 HCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.849736 RT112 CCLE Cell Line Gene CNV Profiles -1.0 -1.39563 Neurod2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 60.5707 primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12820 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.29643 TFAP2C JASPAR Predicted Transcription Factor Targets 1.0 null DANG CCLE Cell Line Gene CNV Profiles -1.0 -2.00702 CP in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.91951 HUH28 CCLE Cell Line Gene CNV Profiles -1.0 -1.35165 Gata3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 96.9024 morphological abnormality of the central nervous system GWASdb SNP-Phenotype Associations 1.0 0.088821 CAL120 CCLE Cell Line Gene CNV Profiles 1.0 2.12856 RAC3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.24311 Brain Lower Grade Glioma_LGG_TCGA-HT-7474-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UFM1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82697 Atoh1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 67.6009 Elf5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 154.238 NCI-H1734 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.34855 mediodorsal nucleus of thalamus_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.03642 HSC-39 COSMIC Cell Line Gene Mutation Profiles 1.0 null NR3C1-21868756-MCF10A-HUMAN ChEA Transcription Factor Targets 2022 1.0 null 496100471_HIP_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.04214 hsa-miR-4677-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 polymorphic layer of rostral subiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.03149 alzheimer disease GWASdb SNP-Phenotype Associations 1.0 0.698689 CAMA1 CCLE Cell Line Gene CNV Profiles 1.0 1.36692 deep layers of rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.64416 Dmrt1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 106.649 NNAT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.82962 posterior (caudal) superior temporal cortex (area 22c)_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.09706 TCF12/HEB-22897851-JUKARTE6-1-HUMAN ChEA Transcription Factor Targets 2022 1.0 null salivary gland GTEx Tissue Gene Expression Profiles -1.0 -0.894509 Sox3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 90.6262 C32 CCLE Cell Line Gene CNV Profiles -1.0 -1.33566 hippocampus (hippocampal formation)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.864272 Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FA-A7Q1-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TE1 CCLE Cell Line Gene CNV Profiles -1.0 -1.7824 abnormality of the vasculature GWASdb SNP-Phenotype Associations 1.0 0.192822 Nr1h3::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 31.6919 Zic3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 61.4665 Pou5f1::Sox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 121.399 CMK COSMIC Cell Line Gene Mutation Profiles 1.0 null amygdaloid complex_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.09353 Arx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 97.8345 RELA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.3333 NB12 COSMIC Cell Line Gene Mutation Profiles 1.0 null CTBP1-25329375-LNCAP-HUMAN ChEA Transcription Factor Targets 2022 1.0 null Npas4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.0445 HES1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.8147 NCI-H1105 COSMIC Cell Line Gene Mutation Profiles 1.0 null RKO COSMIC Cell Line Gene Mutation Profiles 1.0 null CREB3L4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.1712 PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_11_TEAD4 Rummagene Transcription Factor Associations 2026 1.0 null ZNF547 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.3547 Lung squamous cell carcinoma_LUSC_TCGA-85-7950-01A-11R-2187-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null cerebellar cortex_26 pcw_F_12949 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.43329 CTCF_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null FBRSL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.82069 posteroventral (inferior) parietal cortex_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.08811 NEUROD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.5026 Dlx2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 45.9594 CPC-N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.977968 SW1271 CCLE Cell Line Gene CNV Profiles -1.0 -2.03831 anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.892563 AtrioventricularNode BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 2.25325 Brain Lower Grade Glioma_LGG_TCGA-CS-6188-01A-11R-1896-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC6930440-jcav11p0520s3.xlsx-MI_vs_FG-Unnamed_0_MITF Rummagene Transcription Factor Associations 2026 1.0 null Skeletal Muscle Male Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles 1.0 1.33959 hsa-miR-3074-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 NY COSMIC Cell Line Gene Mutation Profiles 1.0 null Nr2e3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.087 inner SZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.992124 central nuclear group Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.22679 CAPNS1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.05712 CACNB1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.86941 hsa-miR-3168 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.55165 143B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0161 PPAR-26484153-CHIP-SEQ-NCI-H1993-HUMAN ChEA Transcription Factor Targets 2022 1.0 null hsa-miR-4665-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 intracellular part LOCATE Predicted Protein Localization Annotations 1.0 null dorsolateral prefrontal cortex_26 pcw_F_12949 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -3.07069 JUN-21703547-K562-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Shox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 56.4052 TE-12 COSMIC Cell Line Gene Mutation Profiles 1.0 null ATOH7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.6822 MOLM13 CCLE Cell Line Gene CNV Profiles 1.0 1.4652 OVTOKO COSMIC Cell Line Gene Mutation Profiles 1.0 null SNUC1 CCLE Cell Line Gene CNV Profiles 1.0 1.74375 Sarcoma_SARC_TCGA-X6-A7WB-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CAL-85-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null lateral intermediate part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.0146 H3K27me3_Adult Liver Roadmap Epigenomics Histone Modification Site Profiles 1.0 null OLIG1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.9003 SNU761 CCLE Cell Line Gene CNV Profiles -1.0 -1.73381 SG in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13442 KCL-22 COSMIC Cell Line Gene Mutation Profiles 1.0 null JEKO-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.980523 SU-DHL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.86397 SMAD4-21799915-A2780-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null NR3C1-21868756-MCF10A-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null PMC7378211-41598_2020_69015_MOESM3_ESM.xlsx-EWS-WT1_rep1_testp-7_annotatedp-Gene_Name_WT1 Rummagene Transcription Factor Associations 2026 1.0 null H3K9me3_fibroblast of lung_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null Gli1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 94.9308 CD9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.7503 Ascl2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 93.0423 Lung squamous cell carcinoma_LUSC_TCGA-56-A49D-01A-11R-A24H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null VZ in dorsomedial frontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.2447 JJN-3 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 hsa-miR-4633-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 Ar JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 113.307 abnormality of the cardiovascular system GWASdb SNP-Phenotype Associations 1.0 0.087294 NCI-H1155 COSMIC Cell Line Gene Mutation Profiles 1.0 null orbital frontal cortex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.84742 Nkx3-2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 63.6927 PPP2R5D CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.32861 Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5075-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null LCLC-97TM1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.65293 TAL1::TCF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.7955 RERF-LC-FM COSMIC Cell Line Gene Mutation Profiles 1.0 null Mecom JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 91.5926 Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66S-01A-21R-A30B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908767 CHAMP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44451 HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.86397 MPC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.54159 LOVO COSMIC Cell Line Gene Mutation Profiles 1.0 null Atf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 22.3366 Zic1::Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 90.9907 CAL 27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.16584 hsa-miR-4755-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Skin Cutaneous Melanoma_SKCM_TCGA-EB-A551-01A-21R-A27Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null E2F2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.3783 SOX2-21211035-LN229_GBM-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null fallopian tube GTEx Tissue Gene Expression Profiles -1.0 -0.894509 MAX JASPAR Predicted Transcription Factor Targets 1.0 null NR4A2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.6386 coronary artery disease GWASdb SNP-Phenotype Associations 1.0 0.36125 AMMECR1L CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8697 HUH-7 COSMIC Cell Line Gene Mutation Profiles 1.0 null FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null GSE223609,GSE223610_0_v_1_kdm6a_human RummaGEO Gene Perturbation Signatures 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A3YS-01A-11R-A23N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsolateral prefrontal cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.19365 P300-27268052-CHIP-SEQ-BCELLS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null TFAP4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.4795 GDM1 CCLE Cell Line Gene CNV Profiles 1.0 1.47832 tauopathy GWASdb SNP-Disease Associations 1.0 0.802948 layer III of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.949793 CAL33 CCLE Cell Line Gene CNV Profiles -1.0 -1.53987 PMC3419980-leu201249x2.xls-RUNX1-ETO_siRE_ChIPSeq_peaks_ge-gene_name_RUNX1 Rummagene Transcription Factor Associations 2026 1.0 null USP6NL CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.31602 RAF1_overexpression_220_GSE42964 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.57166 PSMC3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.10003 Dux JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 96.2576 H3K27me3_SK-N-SH_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H810 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.61301 cerebellar cortex_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.902958 outer CP in midinferior temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.23422 abnormalities of the peripheral arteries GWASdb SNP-Phenotype Associations 1.0 0.270491 PKCTHETA-26484144-CHIP-SEQ-BREAST-HUMAN ChEA Transcription Factor Targets 2022 1.0 null membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null hsa-miR-4699-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 Dlx5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 46.4996 MCC13 COSMIC Cell Line Gene Mutation Profiles 1.0 null Sarcoma_SARC_TCGA-IE-A3OV-01A-11R-A22K-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nr5a1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 141.246 posteroventral (inferior) parietal cortex_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.58018 OCI-M1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.31199 Yy1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 77.4007 Zfx JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 65.0929 SNU-C1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Nobox JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 74.4737 SG in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.6212 Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null CAL-120 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 SP in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.894493 SW 1116 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17008 SULT1A1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.91906 E2F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.8654 496100287_TCx_no dementia_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.33575 outer CP in rostral perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.03811 COLO 206F Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.976023 Gli2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 103.239 Hmga1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 108.372 hsa-miR-28-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 POLR2A ENCODE Transcription Factor Targets 1.0 null BFTC-909 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908767 ES-WA7 Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -1.01073 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RK-01A-11R-A18M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RAC3-21632823-H3396-HUMAN ChEA Transcription Factor Targets 2022 1.0 null HSPA1A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.30301 HCC2218 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19372 vascular disease GWASdb SNP-Disease Associations 1.0 0.099666 WSU-DLCL2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 thyroid GTEx Tissue Gene Expression Profiles -1.0 -0.894509 RBM4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.43605 Liver hepatocellular carcinoma_LIHC_TCGA-CC-A1HT-01A-11R-A131-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GRHL2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0912 H3K9me3_Fetal Lung Roadmap Epigenomics Histone Modification Site Profiles 1.0 null PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR Rummagene Transcription Factor Associations 2026 1.0 null EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.701 GALNT12 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.97123 dorsolateral prefrontal cortex_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.17169 HCC1599 CCLE Cell Line Gene CNV Profiles 1.0 1.40561 Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JA-01A-12R-A34R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null posteroventral (inferior) parietal cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.900678 NECAB3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.5742 small intestine GTEx Tissue Gene Expression Profiles -1.0 -0.894509 Nr5a2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 72.2898 496100484_FWM_no dementia_no TBI_86_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.43053 EGR1_K562_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null JUN ChEA Transcription Factor Targets 1.0 null Hmx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 63.687 IRX4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.09264 PANC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.70139 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4999-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null P31-FUJ COSMIC Cell Line Gene Mutation Profiles 1.0 null TFPI2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.56228 Lung adenocarcinoma_LUAD_TCGA-91-8499-01A-11R-2403-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null dorsolateral prefrontal cortex_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.82866 Prdm4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 54.7392 NCI-H920 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.3476 Tcf12 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 20.4607 hippocampus (hippocampal formation)_16 pcw_M_12287 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.827761 CD33+_Myeloid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.26975 H3K4me1_K562_hg19_2 ENCODE Histone Modification Site Profiles 1.0 null BHLHE40_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Stat5b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 26.3344 layer IIIb of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.51345 Foxf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 38.9696 Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3365-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Acute Myeloid Leukemia_LAML_TCGA-AB-2935-03A-01T-0740-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.6986 SNU1196 CCLE Cell Line Gene CNV Profiles 1.0 2.59243 PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6 Rummagene Transcription Factor Associations 2026 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5007-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null hsa-miR-216a TargetScan Predicted Nonconserved microRNA Targets 1.0 0.965816 Stat6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 113.206 PL45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.916413 Liver hepatocellular carcinoma_LIHC_TCGA-QA-A7B7-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null FEM1B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.62015 Lhx8 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 65.2714 IGF1R-20145208-DFB-HUMAN ChEA Transcription Factor Targets 2022 1.0 null SuperiorCervicalGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.979769 PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5E-Down_H3K27me3_DPY30_KD-Unnamed_12_AR Rummagene Transcription Factor Associations 2026 1.0 null COLO 680N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.70139 Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 121.55 VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.827548 IM-95 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03725 cerebellar cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.890769 Lhx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 93.6652 Pparg::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 76.0564 E2F3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.1693 SMAD4-21799915-A2780-HUMAN ChEA Transcription Factor Targets 2022 1.0 null hsa-miR-4689 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.880544 hsa-miR-508-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 Hoxa13 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 81.4755 496100352_FWM_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.01918 amygdaloid complex_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.31426 precommissural nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.13707 Rarb JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 303.94 Dmbx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 44.8596 NR3C1 ChEA Transcription Factor Targets 1.0 null hsa-miR-2054 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.07142 amygdaloid complex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.10787 Rarg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 145.857 DND-41 COSMIC Cell Line Gene Mutation Profiles 1.0 null OAW28 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.80305 OLIG3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.985 VZ in caudal hippocampal proper Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.65388 Lung adenocarcinoma_LUAD_TCGA-44-7670-01A-11R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H835 COSMIC Cell Line Gene Mutation Profiles 1.0 null cervix uteri GTEx Tissue Gene Expression Profiles 1.0 1.72498 Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-7086-01A-11R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H1573 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.42207 Lung adenocarcinoma_LUAD_TCGA-78-7540-01A-11R-2066-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Nfatc2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 102.055 Intercalated nucleus of amygdala Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.39678 Sox6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 110.137 PORCN CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.02534 Zfp335 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 55.7024 layer II of area 35c Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.17775 raphe magnus nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.850046 Hand1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 31.6497 cerebellum_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.56729 MDN1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.44617 Nr2f6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 172.223 BRINP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.23236 layer III of rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.867373 artery disease GWASdb SNP-Disease Associations 1.0 0.138625 Foxo1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 59.6712 TTC14 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.6364 Stat2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 114.078 ZBTB14 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.3508 BV173 CCLE Cell Line Gene CNV Profiles 1.0 1.75143 JIMT-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.23041 ZDHHC23 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.32207 HCC70 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.66944 Arid5a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 53.8547 CHAGO-K-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19301 HHIPL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.85888 DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.81491 FERD3L JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.8356 hsa-miR-4539 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.921135 KPL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.10906 T-47D Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.947355 NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION ChEA Transcription Factor Targets 2022 1.0 null GGH CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.91359 TrigeminalGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.941605 721_B_lymphoblasts BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -2.4324 posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.8 TCFL5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.8535 hsa-miR-599 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.2992 RELB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.2994 arterial stenosis GWASdb SNP-Phenotype Associations 1.0 0.270491 Msgn1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 54.2509 zona incerta Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.899217 midline nuclear complex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.53335 CTCF_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCOR-22424771-293T-HUMAN ChEA Transcription Factor Targets 2022 1.0 null 496100445_HIP_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.38815 NCI-H441 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06588 intracellular membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null inferior olive, medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.95192 CHL-1 COSMIC Cell Line Gene Mutation Profiles 1.0 null Kidney Chromophobe_KICH_TCGA-KO-8404-01A-11R-2315-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null L-363 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.86397 posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.58828 Hmx2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 71.8745 amygdaloid complex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.845388 59M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.45192 arterial calcification GWASdb SNP-Phenotype Associations 1.0 0.903602 BORCS6 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.49422 HCC12 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.03408 RFX7 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.435 dementia GWASdb SNP-Disease Associations 1.0 0.389013 ARHGAP11A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78962 dorsolateral prefrontal cortex_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.41282 kidney GTEx Tissue Gene Expression Profiles -1.0 -0.894509 hsa-miR-4446-5p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 caudal portion of VFC (area 44) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.30372 CAL-120 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.07625 Thap11 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 108.541 BLVRA CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.10303 HES2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.2917 NFYB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.8102 Lhx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 49.588 SW 1463 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.916413 H3K4me3_H1 BMP4 Derived Trophoblast Cultured Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null STAT3-23295773-U87-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null TP53 JASPAR Predicted Transcription Factor Targets 1.0 null retroparafascicular area of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.31171 hsa-miR-1178 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.99187 ASCL1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 67.582 MLF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.53728 posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.43329 prostate GTEx Tissue Gene Expression Profiles 1.0 0.88765 SNU1214 CCLE Cell Line Gene CNV Profiles -1.0 -1.38617 HCC1897 CCLE Cell Line Gene CNV Profiles 1.0 1.80619 Tfcp2l1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 44.7444 vascular calcification GWASdb SNP-Phenotype Associations 1.0 0.903602 JJN-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.947355 rostral part of entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.36986 posteroventral (inferior) parietal cortex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.836855 SNU-1040 COSMIC Cell Line Gene Mutation Profiles 1.0 null 496100329_FWM_probable Alzheimer's disease_TBI_100+_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.22766 GATA1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null GSE216273,GSE216292_0_v_7_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null MFE-319 COSMIC Cell Line Gene Mutation Profiles 1.0 null Esrrg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 74.8086 hsa-miR-1179 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 Spz1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 95.3333 DMS53 CCLE Cell Line Gene CNV Profiles 1.0 1.44236 OCI-LY-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 disease of anatomical entity GWASdb SNP-Disease Associations 1.0 0.035487 neurodegenerative disease GWASdb SNP-Disease Associations 1.0 0.297845 KPL1 CCLE Cell Line Gene CNV Profiles -1.0 -1.92637 SN12C COSMIC Cell Line Gene Mutation Profiles 1.0 null OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00626 NEUROG2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.7105 ELF5-23300383-T47D-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null SNU-C1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.80841 EFM-192B Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.47229 SKNMC CCLE Cell Line Gene CNV Profiles 1.0 1.47124 BV-173 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 VZ in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.980194 TGFBR1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.75271 ventrolateral prefrontal cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.67056 primary motor cortex (area M1, area 4)_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.06505 amygdaloid complex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.97006 Stat4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 45.5865 SP in caudal midinferior temporal cortex (area TF) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.866917 PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_11_TEAD4 Rummagene Transcription Factor Associations 2026 1.0 null ENG CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.03256 ZNF214 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.3434 CTBP2-25329375-LNCAP-HUMAN ChEA Transcription Factor Targets 2022 1.0 null inner CP in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.843535 UMUC1 CCLE Cell Line Gene CNV Profiles 1.0 1.52908 cerebellar cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.42661 TBX2-33478486-IMR90-HUMAN-LUNG ChEA Transcription Factor Targets 2022 1.0 null posterior (caudal) superior temporal cortex (area 22c)_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.06988 inner SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.3679 hsa-miR-516a-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.7397 rostral migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.853077 NCI-H250 COSMIC Cell Line Gene Mutation Profiles 1.0 null NCI-H2342 COSMIC Cell Line Gene Mutation Profiles 1.0 null OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.19999 Ebf2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 56.4137 layer I of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.892896 ectopic calcification GWASdb SNP-Phenotype Associations 1.0 0.36125 TNNC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.85115 NR4A1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0509 Prdm5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 121.153 ZNF418 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.4372 Hnf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 113.817 HAGH CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.81742 496100623_PCx_no dementia_TBI_86_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.07294 Ovary BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.07165 Mafg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 63.1359 H9 Cells Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles -1.0 -0.908946 KLF13 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.9776 Skin BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.00171 NR1I3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.6837 orbital frontal cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.999108 disease of mental health GWASdb SNP-Disease Associations 1.0 0.049385 NUGC-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908767 HT29 CCLE Cell Line Gene CNV Profiles -1.0 -2.20361 nervous system disease GWASdb SNP-Disease Associations 1.0 0.05594 primary visual cortex (striate cortex, area V1/17)_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.01121 MEWO COSMIC Cell Line Gene Mutation Profiles 1.0 null KMS-34 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.916413 HOP-92 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.29195 SP in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.11421 STAT3-23295773-U87-HUMAN ChEA Transcription Factor Targets 2022 1.0 null OAW-28 COSMIC Cell Line Gene CNV Profiles 1.0 2.08391 GBA2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.48598 ventrolateral prefrontal cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.72841 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5000-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Foxn1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 14.7765 CiliaryGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.51635 Alx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 98.4476 Nrf1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 52.8691 cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null PANC1 CCLE Cell Line Gene CNV Profiles -1.0 -1.49914 Ikzf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 63.2401 ANP32B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.33643 MZ in dorsomedial extrastriate cortex (V2) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.982471 ATF3_K562_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Creb5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 28.2809 hsa-miR-708 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 Ptf1a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 147.855 LCLC97TM1 CCLE Cell Line Gene CNV Profiles 1.0 1.32763 NCIH1838 CCLE Cell Line Gene CNV Profiles 1.0 1.54758 stratum lacunosum-moleculare of rostral CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.29754 E2F4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.5791 Uterine Carcinosarcoma_UCS_TCGA-N5-A4RT-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null anterior (rostral) cingulate (medial prefrontal) cortex_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.17744 DBNDD1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.78191 HCC70 CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 orbital frontal cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.13056 NCI-H1573 COSMIC Cell Line Gene Mutation Profiles 1.0 null SNU-423 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.908767 Hmx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 94.3958 IZ in dorsolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.51008 Foxj2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 99.3586 CD34+ BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.07114 NCI-H889 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.00626 AGXT CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.47511 SUM 52PE Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.865952 EPAS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.1891 ZNF274-21170338-K562-HELA ChEA Transcription Factor Targets 2022 1.0 null Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.21239 ZNF416 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.058 Pax7 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 123.648 496100409_FWM_no dementia_TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.356 MYCN JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.4387 ADNP2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.46339 SIMA COSMIC Cell Line Gene Mutation Profiles 1.0 null Lef1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 107.006 PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR Rummagene Transcription Factor Associations 2026 1.0 null indusium griseum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.980241 RUNX1 ChEA Transcription Factor Targets 1.0 null 496100288_HIP_no dementia_TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.1625 dorsolateral prefrontal cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.44373 striatum_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.24366 TPRN CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.19783 caudal (posterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.92777 MCF7 CCLE Cell Line Gene CNV Profiles -1.0 -2.32679 PBX1 ChEA Transcription Factor Targets 1.0 null medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.00638 intercalated nucleus of medulla Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.94402 Nfe2l2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 84.9697 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4900-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null inner CP in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.951825 P300-19829295-ESCS-HUMAN ChEA Transcription Factor Targets 2022 1.0 null 496100496_FWM_possible Alzheimer's disease_no TBI_88_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.32268 RARG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.6269 PTPRU CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.63001 outer SZ in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.7888 Rfx6 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 37.4759 SOX2 ChEA Transcription Factor Targets 1.0 null PRDM1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.5737 primary auditory cortex (core)_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.11255 PMC9160255-41467_2022_30710_MOESM4_ESM.xlsx-AR_specific_regulated_genes-SYMBOL_AR Rummagene Transcription Factor Associations 2026 1.0 null NCI-H1993 COSMIC Cell Line Gene Mutation Profiles 1.0 null SPEF1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.80881 CDCA7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87035 intracellular organelle LOCATE Predicted Protein Localization Annotations 1.0 null MCF-7 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.28415 HT-115 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K27me3_K562_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null inner SZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.34443 Nr2e1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 111.671 Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 159.116 rostral presubiculum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.95809 UKE-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.03918 nucleus LOCATE Predicted Protein Localization Annotations 1.0 null IMR-5 COSMIC Cell Line Gene Mutation Profiles 1.0 null hsa-miR-520f TargetScan Predicted Nonconserved microRNA Targets 1.0 1.40969 Sarcoma_SARC_TCGA-X6-A7W8-01A-21R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE125219,GSE125221_3_v_0_arid1a_human RummaGEO Gene Perturbation Signatures 1.0 null cerebellar cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.936352 PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1 Rummagene Transcription Factor Associations 2026 1.0 null HCC1162 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.37259 STAT3 ChEA Transcription Factor Targets 1.0 null pineal_night BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.937287 SF172 CCLE Cell Line Gene CNV Profiles -1.0 -2.59346 PMC6879454-Data_Sheet_1.xlsx-AA_in_vitro-Unnamed_4_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null myocardial infarction GWASdb SNP-Phenotype Associations 1.0 0.903602 GATA1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Targets 2022 1.0 null OCILY19 CCLE Cell Line Gene CNV Profiles 1.0 1.47527 496100528_FWM_no dementia_no TBI_95-99_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.23025 layer VI of caudal entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.33127 HCC70 COSMIC Cell Line Gene CNV Profiles -1.0 -3.18157 Ankyrin repeat-containing domain InterPro Predicted Protein Domain Annotations 1.0 null TGM2_KD_GSE23702_715_human_NB4 cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Bcl11b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 78.2181 CD56+_NKCells BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.18329 abnormality of the skeletal system GWASdb SNP-Phenotype Associations 1.0 0.063741 Jun JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 83.853 GSE135350_2_v_1_dexamethasone_human RummaGEO Drug Perturbation Signatures 1.0 null PMC6137307-mmc2.xlsx-STAT2-IFNa-Table_S1_STAT2-IFNa_Related_to_Figures_1_4_STAT2 Rummagene Transcription Factor Associations 2026 1.0 null phenotypic abnormality GWASdb SNP-Phenotype Associations 1.0 0.03403 corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.991678 496100381_HIP_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.10764 RUNX1-21571218-MEGAKARYOCYTES-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Nr1h3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 76.9824 Vdr JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 76.2447 HCC1599 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.16912 central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.41689 DMS114 CCLE Cell Line Gene CNV Profiles 1.0 2.21842 NCI-H292 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.33902 PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_35_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.964912 myocardial infarction GWASdb SNP-Disease Associations 1.0 1.02945 MAX ENCODE Transcription Factor Targets 1.0 null hsa-miR-3139 TargetScan Predicted Nonconserved microRNA Targets 1.0 1.0155 GSE216273,GSE216292_14_v_7_palbociclib_human RummaGEO Drug Perturbation Signatures 1.0 null BHLHE22 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9822 Atf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.9728 abnormality of the systemic arterial tree GWASdb SNP-Phenotype Associations 1.0 0.246847 PMC7818749-12931_2021_1617_MOESM1_ESM.xlsx-TBX4-SYMBOL_TBX4 Rummagene Transcription Factor Associations 2026 1.0 null POU3F2-20337985-501MEL-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null MYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.1536 Tcf21 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 43.6243 NCI-H1155 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.919194 IZ in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.29892 COLO 205 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.849736 Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3352-01A-01R-0864-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SG in dysgranular insular cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.18233 H3K27me3_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null COLO680N CCLE Cell Line Gene CNV Profiles -1.0 -1.57667 ZNF841 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.87216 PGR JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.9679 NCI-H2172 COSMIC Cell Line Gene Mutation Profiles 1.0 null REC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.950514 EGR1 ENCODE Transcription Factor Targets 1.0 null dorsolateral prefrontal cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.65478 REL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 55.5294 amygdaloid complex_26 pcw_F_12949 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.28706 NCI-H1838 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67601 SPIC CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.71769 Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4W-01A-12R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Plagl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 29.1663 abnormality of nervous system morphology GWASdb SNP-Phenotype Associations 1.0 0.07846 496100453_HIP_possible Alzheimer's disease_no TBI_88_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.51217 cerebellar cortex_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.83541 cognitive disorder GWASdb SNP-Disease Associations 1.0 0.119389 Eosinophil Count Procedure DisGeNET Gene-Phenotype Associations 1.0 null NFKB2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 52.8568 alzheimer's disease GWASdb SNP-Disease Associations 1.0 0.802948 Erg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 106.27 TRA2A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.34052 H3K9me3_endothelial cell of umbilical vein_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null primary visual cortex (striate cortex, area V1/17)_3 yrs_F_12836 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.918052 BICR 22 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.21119 496100413_FWM_probable Alzheimer's disease_no TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.78745