association	dataset	threshold value	standardized value
Hepatopancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.583
SMC loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.781
fungal-type cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.424
GSE221327_6_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
TPI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62999
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9729
Prospore membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.214
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.1019
Endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.778
TTT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.686
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7396
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.3704
Insect tracheal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.506
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2353
GSE221327_8_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5987
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	14.5394
DSIF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.884
GSE202434,GSE202438_6_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC8423434-mmc7.xlsx-OCT4_HENSM-Genes_n_666_POU5F1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE206516,GSE206518_2_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
External female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
Mis6-Sim4 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.606
Plastid ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.5
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	57.8451
GSE135030_3_v_9_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Root apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.09
GSE193258,GSE193259_5_v_8_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Meiotic spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.743
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	123.518
Cotyledon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.186
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
regulation of double-strand break repair	GO Biological Process Annotations 2025	1.0	null
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.06214
GSE193258,GSE193259_9_v_0_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5269
GSE221327_6_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.7316
GSE135030_8_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.0905
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0576
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.92
Oligoasthenoteratozoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2091
16p11 2 proximal deletion syndrome	WikiPathways Pathways 2024	1.0	null
Leaf epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.083
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.565
wc1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.038
GSE221327_10_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE188570,GSE188571_5_v_2_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Leaf primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.354
Transfer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.683
Cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.496
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.8272
GSE221327_1_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1895
Anaplastic thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.199
Internode	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.7683
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_5_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.2456
Germ tube	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.006
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8696
PMC6744561-41467_2019_12125_MOESM7_ESM.xlsx-BRCA2_156_TCF7_rep1_sorted_peak-Gene_Name_TCF7	Rummagene Transcription Factor Associations 2026	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4267
Middle lamella	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.661
GSE80098,GSE80366_0_v_6_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7957
Body wall muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.154
Spermatheca	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.758
Spliceosomal tri-snRNP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.732
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.081
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8675
GSE221327_10_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Intracellular immature spore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.178
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3626
Neurosecretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.936
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1989
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4268
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Larval integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.16
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_GSC-Unnamed_1_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
Fat body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.986
GSE221327_1_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE221327_8_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9094
Isw1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.721
plant-type cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.095
Nectary	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.237
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0067
regulation of DNA repair	GO Biological Process Annotations 2025	1.0	null
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.5617
GSE221327_4_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_6_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.7341
Spore wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.567
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.05856
GSE135030_8_v_5_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Multiple synapse bouton, contacting multiple dendrites	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.608
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE130437_2_v_1_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	62.2009
Xylanosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.677
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5025
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3642
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0304
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6742
Chloroplast stroma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.675
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.8617
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	34.004
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.6384
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.269
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.72413
Starch grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.44
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ventral sucker	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.782
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3889
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5401
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2378
Hypodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.573
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.0042
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7342
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.268
Plastid stroma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.624
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4211
protein phosphatase 4 complex	GO Cellular Component Annotations 2025	1.0	null
Germinated grain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.704
Precatalytic spliceosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.524
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	55.7665
GSE174701_4_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.7311
GSE148010,GSE148120_3_v_2_tet2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Hairy cell leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.851
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
KB-3-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.507
496100669_FWM_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.07844
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	43.095
CREB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.147
GSE193258,GSE193259_5_v_15_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	54.7257
Shoot tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.073
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.97211
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.813
GSE193258,GSE193259_2_v_0_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Root pericycle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7374
GSE238018_3_v_5_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2801
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.6649
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.22817
GSE135030_3_v_1_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE221327_4_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
DOLK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31791
GSE195663_7_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ascospore-type prospore	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.212
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9684
ACT-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.242
Meiotic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.584
GSE221327_1_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Huelle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.072
Wax gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.253
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.5404
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_14_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
DGKQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57589
GSE202434,GSE202438_8_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.586
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.5583
Scutellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
GSE135030_3_v_10_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Invertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.105
Hyphal cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.32
GSE135030_8_v_10_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Plant cuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.155
Axillary bud meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.636
GSE217132_0_v_1_pfkfb4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.7925
phosphatase activator activity	GO Molecular Function Annotations 2025	1.0	null
PMC7300082-41598_2020_66556_MOESM11_ESM.xlsx-Supplementary_Table_10-ZBTB10_ZBTB10	Rummagene Transcription Factor Associations 2026	1.0	null
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6872
PMC8948659-ADVS-9-2104491-s013.xlsx-Sheet1-Supplemental_Table_9_related_to_Figure_7_Differential_genes_highly_correlated_with_TP53_deletion_in_H929_cells_by_RNA-seq_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.049
GSE193258,GSE193259_5_v_6_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE227698_2_v_1_g0s2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
MNX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72399
Guard cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.848
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.5833
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.82346
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6739
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
GSE221327_4_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
SOX12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3263
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8118
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	51.1465
GSE221327_8_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE182921_0_v_1_slit2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.316
GSE202434,GSE202438_4_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Sporulating cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.003
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5698
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4517
Seh1-associated complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.683
Rpd3S/Clr6-CII complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.006
Melioidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.289
Root tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.001
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.96
GSE193258,GSE193259_5_v_12_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
u	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.15
GSE221327_1_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9685
C3orf80	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11113
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.45403
PMC7818749-12931_2021_1617_MOESM1_ESM.xlsx-TBX4-SYMBOL_TBX4	Rummagene Transcription Factor Associations 2026	1.0	null
Plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.068
Mating projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.852
GSE206516,GSE206518_2_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC10247733-41408_2023_863_MOESM2_ESM.pdf-468-SMAD5-AS1_SMAD5	Rummagene Transcription Factor Associations 2026	1.0	null
Protein phosphatase 4 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.074
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.327
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.672
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Macrolide transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6481
Anterior midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.587
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.0666
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0357
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	123.753
Chloroplast ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.604
Peritrophic membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.607
GSE238018_3_v_2_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE221327_4_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
magnesium-dependent protein serine/threonine phosphatase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.8435
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.043
GSE193258,GSE193259_5_v_4_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Protein serine/threonine phosphatase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Crown gall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.712
Monopolin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.641
Superoxide dismutase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.129
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9355
BCL11B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.15988
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.7368
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8517
Sin3-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.836
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.616
496100353_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.386
HT-115 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.343
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.4143
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7104
GSE142210_11_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.619
PMC8709578-elife-69843-supp4.xlsx-HSF1_ChIP-seq_peaks-Gene_Name_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
protein serine/threonine phosphatase complex	GO Cellular Component Annotations 2025	1.0	null
Gingival fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.603
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.2122
PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_1_DLX4	Rummagene Transcription Factor Associations 2026	1.0	null
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0419
NDUFV1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52893
GSE193258,GSE193259_5_v_1_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.5204
Spindle pole body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.772
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3087
GSE221327_10_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12358249-supplementary_table_s5_ioaf064.xlsx-DMRT1_-_vs_WT__4_months-Unnamed_1_DMRT1	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF689	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.1316
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8673
Mesophyll cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE221327_6_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9701
GSE206516,GSE206518_6_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_GSC-Unnamed_3_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
GSE135030_3_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE193258,GSE193259_5_v_14_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Epicuticle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.816
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.9017
GSE202434,GSE202438_3_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Phosphatase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE193258,GSE193259_5_v_3_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Thyroid cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.102
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7588
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0937
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.6914
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.894
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.116
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.7664
Stipe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.523
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.8653
PMC5058748-oncotarget-07-31177-s002.xlsx-ZNF224_gene_peaks_promoter-Table_S3_Genes_that_contain_a_ZNF224_enriched_region_within_1_kb_of_the_transcription_ZNF224	Rummagene Transcription Factor Associations 2026	1.0	null
Bract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.244
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0657
Hyphal tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.23
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4655
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.36
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.5
Amyloplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.503
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.8929
GSE202434,GSE202438_4_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36086
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1622
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9774
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.225
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.543
Ascospore wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.207
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cephalothorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.752
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4238
anaphase-promoting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.347
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.1284
Caryopsis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.252
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4597
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5744
Cell pole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.938
GSE221327_5_v_11_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.108
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.3793
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_15_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8962
Gravid adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.891
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
Cell tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.042
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.2967
Cob	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.784
Cell wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.981
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_GSC-Unnamed_2_GSC	Rummagene Transcription Factor Associations 2026	1.0	null
Vegetative cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.901
Sporophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.566
Scolex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.695
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.7694
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8764
Type III polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.628
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Mesophyll	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.798
GSE221327_5_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Vitellarium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
SRR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67064
preribosome, small subunit precursor	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
GSE193258,GSE193259_5_v_13_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7449
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1885
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	15.7975
PMC11772884-41421_2024_747_MOESM6_ESM.xlsx-8_DEGs_RUNX1-OE_vs_control-Gene_Symbol_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.0431
Panicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.018
U4/U6 x U5 tri-snRNP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.841
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.0
protein phosphatase activator activity	GO Molecular Function Annotations 2025	1.0	null
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	98.5958
PMC8423434-mmc7.xlsx-OCT4_Primed-Genes_n_912_POU5F1	Rummagene Transcription Factor Associations 2026	1.0	null
DNA damage response	GO Biological Process Annotations 2025	1.0	null
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3148
496100495_FWM_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	10.4757
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.7292
GSE224004,GSE224005_0_v_8_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Female inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.738
GSE214931_1_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE221327_10_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_5_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE202434,GSE202438_4_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Noc4p-Nop14p complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.56
PMC4521181-oncsis201520x8.pdf-57-GLI1_GLI1	Rummagene Transcription Factor Associations 2026	1.0	null
protein phosphatase regulator activity	GO Molecular Function Annotations 2025	1.0	null
Spikelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.053
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.7593
GSE219274,GSE219276_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.0322
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.8251
GSE225735_0_v_4_aldosterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE135030_11_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PIP5K1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68956
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9967
Shoot apical meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.272
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7509
Enteric muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.871
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0186
GSE238116_1_v_0_egr1_human	RummaGEO Gene Perturbation Signatures	1.0	null
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3891
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.53522
Taproot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.976
GSE225762_1_v_0_pcmt1_human	RummaGEO Gene Perturbation Signatures	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5714
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.2977
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.623
GSE195663_0_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Glume	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.227
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.0242
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6271
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.816
Tou	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.711
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	60.4607
Mo-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.881
jm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.514
GSE135030_8_v_2_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Protein phosphatase 4 complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.055
Mitotic arrest phase fetal germ cell_Fetal gonad_Human	CellMarker Gene-Cell Type Associations	1.0	null
Tassel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
Female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.953
Coleoptile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.29
Protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.773
Glucagon signaling pathway	KEGG Pathways 2026	1.0	null
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4958