association	dataset	threshold value	standardized value
phenazopyridine-5758	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.74771
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Semimembranosus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.655
OE33	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69667
Prostate adenocarcinoma_PRAD_TCGA-HC-7749-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K37486644	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26585
dexamethasone_homo sapiens_gpl4133_gse42619	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
intracellular organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
U031	COSMIC Cell Line Gene Mutation Profiles	1.0	null
mRNA_KLF4_18264089	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
BRD-K67520049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42463
BRD-K16304302	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1222
KPNRTBM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46908
MCC26	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K56562541	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17889
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115855
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
TRMT11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2267
BRD-A14098586	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26388
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060474
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055486
GSE147876,GSE147877_2_v_7_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.07371
CRCGN016_MCF10A.TP53.M_24H:O15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.36017
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5110-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K46623934	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49099
ACN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28006
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6086
Spermatogenic failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.435
Epididymal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.764
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054718
BRD-K99016279	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95782
721_B_lymphoblasts	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.41096
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43624
raphe magnus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02059
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053982
PMC10794847-mmc3.xlsx-PBRM1_KD_down-Table_S2_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_differentiation_state_Related_to_Figure_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
abnormality of the urinary system	GWASdb SNP-Phenotype Associations	1.0	0.105546
E2F1-18555785-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
HINT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80654
BRD-K85908443	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42308
SW872	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
CRCGN011_HEPG2_24H:M13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.9708
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378885
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7084
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936547
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1ML-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE163240_3_v_4_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CHD7	ENCODE Transcription Factor Targets	1.0	null
CRCGN017_MCF10A.WT.HP_24H:A21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.33735
GSE214212_3_v_1_chd6_human	RummaGEO Gene Perturbation Signatures	1.0	null
CAL51	DepMap CRISPR Gene Dependency	1.0	2.84954
BRD-K47724892	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.74553
BCP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81879
Digenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
MAC2A	DepMap CRISPR Gene Dependency	1.0	6.50221
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.24777
kidney disease	GWASdb SNP-Disease Associations	1.0	0.686763
abnormality of the genitourinary system	GWASdb SNP-Phenotype Associations	1.0	0.059301
BRD-A35871558	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55845
GI-ME-N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	2.12233
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916967
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.686763
BRD-K42307233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76455
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.40233
cytoskeleton	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
BRD-K34573832	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66117
tylosin-tartrate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.32039
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20402
CRCGN016_MCF10A.TP53.M_24H:O18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49556
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.18
MEWO	CCLE Cell Line Gene CNV Profiles	1.0	1.35398
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09052
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886392
TC32	CCLE Cell Line Gene Expression Profiles	1.0	1.55972
AM38	DepMap CRISPR Gene Dependency	1.0	2.54255
HCC1187	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.596746
stele	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.417337
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1464
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2791
CRCGN014_HEPG2_3H:M13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1603
CRCGN016_MCF10A.TP53.M_24H:P18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.55194
BRD-K87217296	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20506
IZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21725
EPCAM_OE_GDS4887_342_human_IL-28B	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ZHX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04641
E2A	MotifMap Predicted Transcription Factor Targets	1.0	null
H4K20me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K88597074	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43704
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0576
CRCGN017_MCF10A.TP53.M_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.60659
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40243
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.54972
SP in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10705
MUTZ8	DepMap CRISPR Gene Dependency	1.0	5.02871
CRCGN010_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.31685
EPHA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.1445
fallopian tube	GTEx Tissue Gene Expression Profiles	1.0	1.09285
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.42194
BRD-K20023110	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30893
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4769-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
outer CP in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05555
BRD-K70819166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65202
NB1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HSC5	DepMap CRISPR Gene Dependency	1.0	2.21134
NFYA-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
inner CP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.3009
CRCGN016_MCF10A.TP53.M_24H:K05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	9.1813
organelle part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
BRD-K87743988	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12347
CRCGN016_MCF10A.TP53.M_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.64216
TCFL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68842
chlorcyclizine-3893	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K82781769	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51558
BRD-K04092807	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03198
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68701
NCI-H1435	COSMIC Cell Line Gene Mutation Profiles	1.0	null
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.82788
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.062881
intracellular	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043086
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0462
Brain Lower Grade Glioma_LGG_TCGA-DU-A5TT-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4013
HUNS1	CCLE Cell Line Gene Expression Profiles	1.0	1.51531
CRCGN017_MCF10A.TP53.M_24H:O21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.51399
BRD-K74547048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05017
type ii polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.1916
HDAC6	ENCODE Transcription Factor Targets	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45916
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.62348
WIL2-NS	COSMIC Cell Line Gene Mutation Profiles	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041206
LB2518-MEL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4761-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05145
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21453
RPMI8226	CCLE Cell Line Gene Expression Profiles	1.0	1.50765
Supramolecular polymer	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
SkeletalMuscle	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.45501
WSU-NHL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.270108
HEC116	DepMap CRISPR Gene Dependency	1.0	2.78816
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8289
RL	DepMap CRISPR Gene Dependency	1.0	2.0616
H3K9me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K75152103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.58726
LU-139	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K09598619	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.74107
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.75495
PHF8-20622853-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_17333_OE_NANOS1_SRP216951	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	8.78879
CRCGN016_MCF10A.WT.HP_24H:O24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.06754
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8805
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44822
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7342
intracellular membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
U118MG	DepMap CRISPR Gene Dependency	1.0	2.31541
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7523
parasitic helminthiasis infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.482844
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045044
brain infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.205585
PRPF19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.28571
Brain Lower Grade Glioma_LGG_TCGA-DU-7290-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
STAT3-19079543-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
HDAC6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91821
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-211	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
BRD-K49424866	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49007
BRD-K47895166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.69736
cerebrospinal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338545
A-431 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
BRD-K34158806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.16139
BRD-K14199536	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25442
GSE160817_7_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-A62469171	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.85153
pravadoline	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.53466
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8456
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	1.32931
intracellular non-membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50408
Rectum adenocarcinoma_READ_TCGA-CI-6619-01B-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC12749419-41598_2025_28826_MOESM3_ESM.xlsx-RFT_iBody3_triplicate-Genes_MBD1	Rummagene Transcription Factor Associations 2026	1.0	null
vaginal discharge	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.787623
cholangitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18651
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04519
protoxylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.201944
CRCGN016_MCF10A.TP53.M_24H:N14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.81225
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.33
paraventricular nucleus of hypothalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.958677
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.488
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886392
RPMI8402	CCLE Cell Line Gene Expression Profiles	1.0	1.65735
CBX3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K75889393	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18686
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	4.93618
PK1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.06408
SMZ1	DepMap CRISPR Gene Dependency	1.0	2.19014
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8156
auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067229
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.460692
CRCGN016_MCF10A.TP53.M_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.16963
Prostate adenocarcinoma_PRAD_TCGA-CH-5761-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K97805186	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0724
corynanthine-4227	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN015_MCF10A.WT.HP_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.13366
CRCGN017_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.5867
HCC33	CCLE Cell Line Gene CNV Profiles	-1.0	-2.38191
abnormality of the upper urinary tract	GWASdb SNP-Phenotype Associations	1.0	0.129588
lytic vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.887316
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26468
BRD-K64770897	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04726
BRD-K83871946	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10989
abnormality of erythrocytes	GWASdb SNP-Phenotype Associations	1.0	0.259084
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61766
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SNU216	DepMap CRISPR Gene Dependency	1.0	2.26777
BRD-K59045095	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01277
CRCGN017_MCF10A.WT.HP_24H:N23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49965
BRD-K13752834	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.77556
BRD-K41649962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00041
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20517
SISO	DepMap CRISPR Gene Dependency	1.0	2.70593
SAOS-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
caudal portion of VFC (area 44)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.50994
BRD-K28305165	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14979
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01799
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4634
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4161-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7509
BRD-K48228567	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25558
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9386
SEM	DepMap CRISPR Gene Dependency	1.0	3.34376
HDAC2	ENCODE Transcription Factor Targets	1.0	null
CRCGN017_MCF10A.WT.HP_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.55245
kidney	GTEx Tissue Gene Expression Profiles	1.0	1.1109
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	1.48078
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
CRCGN010_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.24365
BRD-K64859133	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.85765
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043542
GSE240386,GSE242143_8_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1985
BRD-A33119430	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.00329
Facioscapulohumeral muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.953
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.72744
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hydroflumethiazide-7019	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN017_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.12675
H3K9me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043493
nucleus	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
H3K9me3_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VC-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-AG-3742-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
strychnine-hcl	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.70227
PMC8390644-41467_2021_25107_MOESM6_ESM.xlsx-Naive_BRM-KD_significant-gene_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7X0-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TRIM24_knockout_300_GSE19675	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	2.02654
BRD-K56563145	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02834
UO31	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.26509
goiter	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.271174
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105664
BRD-A06837695	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07296
nerve	GTEx Tissue Gene Expression Profiles	-1.0	-1.17033
GSE115542_5_v_3_digoxin_human	RummaGEO Drug Perturbation Signatures	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.887316
CREB1_01_194	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.43043
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.799
DFCI024	CCLE Cell Line Gene Expression Profiles	1.0	1.76954
MZ in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.948761
NCI H23	BioGPS Cell Line Gene Expression Profiles	1.0	1.48192
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09052
REST	ENCODE Transcription Factor Targets	1.0	null
EKVX	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.32209
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843097
huh-7	BioGPS Cell Line Gene Expression Profiles	1.0	1.14062
CRCGN016_MCF10A.TP53.M_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28728
PAX3_Knock-in_GDS3331_598_mouse_Palatal shelves (E14.5 embryos - palate)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K95457967	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32817
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936547
Male pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.304
U7 snRNP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.882
CCFSTTG1	DepMap CRISPR Gene Dependency	1.0	2.14056
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A85I-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
abnormality of blood and blood-forming tissues	GWASdb SNP-Phenotype Associations	1.0	0.053288
WSUNHL	DepMap CRISPR Gene Dependency	1.0	3.64104
A361	BioGPS Cell Line Gene Expression Profiles	1.0	0.896001
CRCGN016_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.83701
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5986-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN009_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.23317
SW1271	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ChIP_STAT3_19079543	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A8AZ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inner CP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01618
Supramolecular complex	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
ventricular (matrix) zone of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13123
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00457
CRCGN016_MCF10A.TP53.M_24H:E14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15641
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5817
MCF7	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.5743
Lek	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.697
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68D-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sertoli cell-only syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.031
NEUROD1_Deficiency_GDS3000_612_mouse_Pineal glands of neonates	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
type 2 diabetes mellitus	GWASdb SNP-Disease Associations	1.0	1.61744
GSE180185_9_v_5_setbp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
respiratory failure	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.129291
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.196
NCIH747	CCLE Cell Line Gene Expression Profiles	-1.0	-1.66286
mRNA_GADD45A_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.07808
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26468
abnormal eye morphology	GWASdb SNP-Phenotype Associations	1.0	0.116878
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.39425
BRD-K02230174	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32071
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103445
BRD-A20213616	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28173
POU5F1-18692474-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
CRCGN015_HEPG2_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.92393
RH18	CCLE Cell Line Gene Expression Profiles	-1.0	-1.56158
placenta	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23083
TE14	CCLE Cell Line Gene Expression Profiles	-1.0	-2.09315
FOXO1_KO_GSE40655_481_mouse_T reg	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K08829593	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04238
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.11883
H3K9me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
BRD-K82674931	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14826
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-A6NJ-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE200839,GSE233826_3_v_6_tnrc18_human	RummaGEO Gene Perturbation Signatures	1.0	null
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.36054
STAT3	ChEA Transcription Factor Targets	1.0	null
outer CP in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21164
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03413
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.68377
BRD-A90249268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50232
hsa-miR-204	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
LHX8_Deficiency_GDS3254_600_mouse_Newborn ovaries	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-A55574211	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.00836
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.888824
BRD-K83603369	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34753
hsa-miR-3679-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
CAKI2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.74891
TRIM33_knockdown_304_GSE32903	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.52268
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14496
transitional cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180462
TGBC1TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Supramolecular fiber	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
abnormality of the globe	GWASdb SNP-Phenotype Associations	1.0	0.116878
NCIH1944	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44281
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TG-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Granulomatous Disease, Chronic_Blood neutrophil_GSE935	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.7079
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.67829
bronchiectasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.45447
abnormality of the endocrine system	GWASdb SNP-Phenotype Associations	1.0	0.082818
CRCGN015_MCF10A.TP53.M_24H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.3367
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.2157
SG in midinferior temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.56767
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4637-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
xylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.500007
IMR32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71966
GSE130396_0_v_2_braf_human	RummaGEO Gene Perturbation Signatures	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.675357
blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.1936
methyl-salicylate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.6305
macromolecular complex	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
polysensory temporal cortex (area 22p)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.2494
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76678
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73144
FU97	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58342
dicoumarol-4323	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
butyrylcholine-cl	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73338
vaginal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.499614
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91821
BRD-K67200393	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23113
BXPC3	CCLE Cell Line Gene Expression Profiles	-1.0	-2.80068
OCT4_KD_GDS1824_135_mouse_embryonic stem (ES)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
procambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126783
NZOV9	DepMap CRISPR Gene Dependency	1.0	3.14983
BRD-K62415056	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22388
CRCGN016_MCF10A.TP53.M_24H:E20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.61396
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254239
GSE258991_1_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-A57474391	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12414
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0667
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21453
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060208
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9613
Lung adenocarcinoma_LUAD_TCGA-J2-A4AD-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.136938
Mccoy	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.677
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91821
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
BRD-K42247636	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15679
H3K27me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CRCGN011_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9942
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.93059
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071808
CP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.52579
H3K9me3_MEL cell line_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
496100536_HIP_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.44418
subarachnoid space	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.328262
CRCGN012_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.738
BOKU	DepMap CRISPR Gene Dependency	1.0	2.08243
GSE168401_1_v_3_harmine_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCT-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.203933
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8403
496100632_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.06564
mRNA_GATA3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
BRD-K94191869	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09715
sweat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.489838
Adrenocortical carcinoma_ACC_TCGA-OR-A5KU-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K32040163	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23323
pantothenic-acid	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68583
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2694
Sarcoma_SARC_TCGA-DX-A1KY-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066528
GSE160817_7_v_8_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13747
COR-L88	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN017_MCF10A.WT.HP_24H:K22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.60125
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.366
HCC1937	CCLE Cell Line Gene Expression Profiles	-1.0	-2.14252
CRCGN017_MCF10A.TP53.M_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.79406
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K47694606	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.77138
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051494
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.317
SW1710	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Coats disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051357
proxymetacaine-6332	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
KNS62	CCLE Cell Line Gene Expression Profiles	-1.0	-1.56194
hsa-miR-943	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
SP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.17912
BRD-K78097639	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32626
BRD-K05640282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21982
Sarcoma_SARC_TCGA-DX-A7EO-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA6-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
imatinib_homo sapiens_gpl96_gds3045	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE264621_1_v_3_secretin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney Chromophobe_KICH_TCGA-KL-8327-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K20554239	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20684
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VH-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.22465
Lung adenocarcinoma_LUAD_TCGA-99-8032-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.747791
CRCGN008_HEPG2_24H:L04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.6663
VZ in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.27617
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1345
RAB3A_KO_GDS2483_701_mouse_Hippocampus	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SW900	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ONDA9	DepMap CRISPR Gene Dependency	1.0	3.93567
BRD-K33891642	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30393
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060911
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.957
GSE147876,GSE147877_4_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE163240_3_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BRD-K62157654	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17946
REST_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041963
NCI-H2227	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COLO-800	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3942
Psoriasis vulgaris_Skin tissue_GSE14905	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.5005
BRD-K34318928	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31819
BRD-K77139764	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.27428
H3K9me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
SMARCD1-25818293-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC5735185-41467_2017_1200_MOESM4_ESM.xlsx-Table_S1-Choi_et_al_2016_DUX4_up-regulated_targets_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076889
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2616
BRD-K63211577	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12943
JHH-7	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN015_MCF10A.TP53.M_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.45125
Testicular somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.588
BRD-A15330900	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41052
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4176-01A-02R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCVADR RES	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.10177
BRD-K75260889	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60027
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9774
H3K27ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8289
BRD-K16717067	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.59455
CRCGN017_MCF10A.TP53.M_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.05474
BRD-K35429561	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11841
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.62595
hsa-miR-1909	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
H3K9me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
RL	CCLE Cell Line Gene CNV Profiles	1.0	1.63877
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8289
496100480_HIP_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.0415
TSEN54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29179
PMC12749419-41598_2025_28826_MOESM3_ESM.xlsx-RFT_iBody3_hexaplicate-Genes_MBD1	Rummagene Transcription Factor Associations 2026	1.0	null
DMNB	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.18551
Lung adenocarcinoma_LUAD_TCGA-95-A4VP-01A-21R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K34808207	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53437
KYSE510	DepMap CRISPR Gene Dependency	1.0	2.16054
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34869
TANOUE	DepMap CRISPR Gene Dependency	1.0	2.56903
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RM-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K21284411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49273
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:P14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.05632
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13747
CRCGN010_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2369
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21453
S-isopropylisothiourea	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.56425
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81743
BRD-K72435943	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.74566
Brain Lower Grade Glioma_LGG_TCGA-VM-A8CF-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRCA1_DN.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041594
RPE1SS6	DepMap CRISPR Gene Dependency	1.0	2.41441
central nuclear group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.30756
dinoprostone-6552	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
schistosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.641433
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3554
GSE163240_2_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
E2F1	ChEA Transcription Factor Targets	1.0	null
CPCN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74922
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355604
mRNA_KLF4_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Hereditary spastic paraplegia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BM-01A-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7103-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5506
ChIP_MYC_19079543	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
hsa-miR-1973	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78107
Bmi-1_KD_GDS2724_102_human_DAOY medulloblastoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.87179
HSC-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K65446780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0233
pi-body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.055
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050981
hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.31775
actin filament	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
butylated-hydroxytoluene	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76543
BRD-K72335238	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1104
JVE015	DepMap CRISPR Gene Dependency	1.0	5.10126
CTCF-27219007-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4849-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Actin filament	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
BRD-M94053246	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.02553
urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.446038
BRD-K23326916	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28533
BRD-K02190643	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.02466
BRD-K38998073	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60784
ETS2_KD_GSE62168_258_mouse_mouse trophoblast stem cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
urinary bladder cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148392
intracellular part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01799
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.934967
KYSE410	DepMap CRISPR Gene Dependency	1.0	2.63529
eye disease	GWASdb SNP-Disease Associations	1.0	0.116816
CRCGN014_HEPG2_3H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.14365
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52256
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21538
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055026
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.043
cullin-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GT3TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
STAT3-19079543-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
EN2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5097
F5	CCLE Cell Line Gene Expression Profiles	1.0	2.25281
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04917
betamethasone-valerate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45731
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
BRD-K19387722	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42101
SLVL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-44-8119-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sensory system disease	GWASdb SNP-Disease Associations	1.0	0.097171
IZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20995
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.61088
CRCGN016_MCF10A.TP53.M_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.7675
P12ICHIKAWA	CCLE Cell Line Gene Expression Profiles	1.0	1.77228
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216126
ES-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
YH-13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K09051149	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.9275
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042898
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4960-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dopaminergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.123
josamycin-5692	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
dystroglycan complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.543587
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9708
hsa-miR-4690-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
H3K4me3_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
BRD-K17661785	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02095
CLTA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63012
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.881415
CRCGN014_HEPG2_3H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.4822
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
alfuzosin-5605	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50982
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03413
mRNA_ATF3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
MSTN_KO_GDS3637_439_mouse_muscle	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
mitochondrial part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.062293
gigantocellular reticular nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04856
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.85483
BRD-K16598630	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.94762
BRD-K08150827	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21961
limitans nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.836229
non-membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
Polygenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.143
hsa-miR-361-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SG in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02858
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.486266
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43269
thyroiditis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.168617
Chromatoid body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.761
BRD-K66807670	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55086
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
Sarcoma_SARC_TCGA-DX-A1KZ-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2887
CRCGN015_HEPG2_48H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.51035
mRNA_ZFP281_18757296	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
CRCGN017_MCF10A.WT.HP_24H:P06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.86525
mRNA_SOX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
K562	DepMap CRISPR Gene Dependency	1.0	3.61563
496100579_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.21368
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37622
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4595
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048797
T173	CCLE Cell Line Gene Expression Profiles	1.0	1.88371
cellular_component	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
CRCGN017_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.93115
peritoneal mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.612555
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7664
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4973-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5443-01A-01R-1514-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-G5-6641-01A-11R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K51370144	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.90415
MOLT-16	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN016_MCF10A.TP53.M_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.83177
CRCGN015_MCF10A_48H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.99391
SJCRH30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.929874
CRCGN017_MCF10A.TP53.M_24H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.21076
lateral ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02856
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4918-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FAM156B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02947
BRD-K10092312	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24886
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.8
CRCGN017_MCF10A.TP53.M_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.25482
BRD-K49090949	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04727
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039474
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0053
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
Adductor magnus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.902
furazolidone	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.57823
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.057999
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.689577
IZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.18424
IOMMLEE	CCLE Cell Line Gene Expression Profiles	1.0	1.66254
CD14+_Monocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.40754
CORL24	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9528
496100344_HIP_probable Alzheimer's disease_TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.21263
RBBP5	ENCODE Transcription Factor Targets	1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6759
Biceps brachii	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.591
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
COLO775	CCLE Cell Line Gene Expression Profiles	1.0	2.59361
abnormality of bone marrow cell morphology	GWASdb SNP-Phenotype Associations	1.0	0.212191
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3N6-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.882367
CRCGN017_MCF10A.WT.HP_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.15205
Facioscapulohumeral muscular dystrophy 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.969
BRD-K14020943	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1076
CRCGN014_HEPG2_3H:D07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.36625
rosiglitazone-6192	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
layer II of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.867486
BRD-K03070961	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57413
NB7	DepMap CRISPR Gene Dependency	1.0	3.38966
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Polymeric cytoskeletal fiber	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
NASH_Liver_GSE24807	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.63145
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6433-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN017_MCF10A.TP53.M_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.91635
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A3-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney Chromophobe_KICH_TCGA-KO-8413-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LNCAPCLONEFGC	DepMap CRISPR Gene Dependency	1.0	5.36562
BRD-K89062214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2106
BRD-K53893978	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83636
LOUNH91	CCLE Cell Line Gene Expression Profiles	1.0	1.3632
CBX2-22325352-293T-REX-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
embryoday6.5	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.959223
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3460-01A-02R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41N-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HA1E	DepMap CRISPR Gene Dependency	1.0	3.63025
BRD-K40567080	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45384
PANK4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.99661
POU5F1	ChEA Transcription Factor Targets	1.0	null
lhx8_18509161_newborn_ovary_lof_mouse_gpl1261_gds3254	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	1.83617
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9075
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046307
PL18	COSMIC Cell Line Gene Mutation Profiles	1.0	null
pulmonary edema	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.27153
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.991
CCRT CEM	BioGPS Cell Line Gene Expression Profiles	1.0	1.24343
CORL279	CCLE Cell Line Gene Expression Profiles	-1.0	-1.79464
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051582
Prostate adenocarcinoma_PRAD_TCGA-HC-A4ZV-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1788
CRCGN015_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.3411
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975391
spinal column	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163624
SNU-C2B	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81S-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Semitendinosus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.548
BRD-K56131419	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68947
PMC7603494-41467_2020_19353_MOESM6_ESM.xlsx-Ch_TCF3_up_and_binding_Overlapp-Unnamed_6_TCF3	Rummagene Transcription Factor Associations 2026	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-H4-A2HO-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.31388
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K19396909	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69608
BRD-K67321912	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24061
BRD-K93195783	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13416
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936547
CRCGN009_HEPG2_24H:F19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.2403
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
BRD-K38431962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.68244
Rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.213
H3K9me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Outer dynein arm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.644
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1511
RUNX1_KO_GDS1511_250_mouse_Embryos at E8.5	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K30288714	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63176
BRD-K17840858	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26779
OVISE	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9684
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.78085
WM-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KML1	DepMap CRISPR Gene Dependency	1.0	7.10981
mRNA_CDX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5F-Up_H3K27me3_DPY30_KD-Unnamed_12_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN010_HEPG2_24H:H07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.2054
AP2A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39062
BRD-K12281552	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59055
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5085-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH524	CCLE Cell Line Gene Expression Profiles	-1.0	-1.59662
Serum Albumin Measurement	DisGeNET Gene-Phenotype Associations	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
BRD-K51670762	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02145
glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.423265
CD19+_BCells(neg._sel.)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.22158
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.255241
CHD7_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2416
CRCGN015_MCF10A.WT.HP_24H:K18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.4832
BRD-K55467482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20023
UBC	Pathway Commons Protein-Protein Interactions	1.0	null
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.802
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IL-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K05789358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12603
STK35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31411
BRD-K32918816	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41696
CRCGN017_MCF10A.TP53.M_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05527
biliary tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060188
BARX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6711
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K07361992	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07672
BRD-K42582718	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12015
SUPT1	CCLE Cell Line Gene Expression Profiles	1.0	1.48416
CD33+_Myeloid	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.885066
mRNA_POU5F1_16518401	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306805
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.99447
bladder transitional cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7146
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0937
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9448
Sarcoma_SARC_TCGA-DX-A8BX-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:P16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.41727
BRD-K88964321	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18252
BRD-K26682747	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31355
indusium griseum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.2853
GATA3-21867929-TH1-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MES-SA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K10171338	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25145
CRCGN010_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1859
membrane-bounded organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
BRD-A38359809	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2908
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043183
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.584208
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1591
CRCGN016_MCF10A.WT.HP_24H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.33036
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A708-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KARPAS-45	COSMIC Cell Line Gene Mutation Profiles	1.0	null
rostral subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.87022
BRD-K67689282	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47573
H3K9ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
bladder transitional cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182654
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4634
NCIH508	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85554
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34594
CiliaryGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-2.58307
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.230656
abnormality of carbohydrate metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.195024
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5120-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cyclosporine_homo sapiens_gpl4133_gse25200	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K67556876	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.99484
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5025
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053992
BRD-K75164441	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07859
BRD-A12822115	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.348
antimycin A-5472	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JP-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1563	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4635
rara_21911359_f9_teratocarcinoma_lof_mouse_gpl1261_gds4294	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.866789
CARD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63588
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Atherosclerosis_Aorta Smooth Muscle Tissue_GSE1560	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.39707
CRCGN017_MCF10A.TP53.M_24H:K03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42199
posterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.12992
BRD-K14756138	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35869
pineal body	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.17974
LHX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.438
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3427-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RKO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K54521353	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57904
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K69100231	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0087
496100349_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.52272
cancellous bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234302
Kidney Chromophobe_KICH_TCGA-KL-8334-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K23876588	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22471
HOP92	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.90806
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21538
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09052
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.697
Prestwick-664-4275	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
actin cytoskeleton	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051613
hsa-miR-324-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3889
CTCF_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BDCA4+_DentriticCells	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.78659
OLIG2-26023283-AINV15-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MCAD_KO_GDS4546_423_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CRCGN012_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.91665
Kidney Chromophobe_KICH_TCGA-KL-8332-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FU97	DepMap CRISPR Gene Dependency	1.0	6.18959
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9094
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN011_HEPG2_24H:L13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2175
DJM-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
retinal disease	GWASdb SNP-Disease Associations	1.0	0.686763
SARS-CoV MA15_Day2-PFU-10^3_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.23748
TDOTT	DepMap CRISPR Gene Dependency	1.0	2.97547
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32311
urinary bladder cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.150849
laterodorsal subdivision of area 8	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.43083
CRCGN016_MCF10A.TP53.M_24H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.07859
CRCGN016_MCF10A.TP53.M_24H:O20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.36072
Bardet-Biedl syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.054
AP5M1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82543
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.2222
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886392
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.373118
BRD-K66729666	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59354
Pauciarticular juvenile arthritis_Peripheral blood mononuclear cell_GSE1402	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	2.05784
BRD-K04232710	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27528
MTX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5489
abnormality of the cardiovascular system	GWASdb SNP-Phenotype Associations	1.0	0.588613
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8289
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09052
BRD-K62318087	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.2618
DA-40-HO94_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.336297
BRD-K58964288	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17119
procainamide-5663	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Ebolavirus(ZEBOV)_1hr_Macrophage_22028943_GSE31747	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.51426
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9I9-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
17683608-TableS5	GeneSigDB Published Gene Signatures	1.0	null
BRD-K57786075	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70181
urinary bladder cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148392
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.61766
Ebolavirus(ZEBOV)_5day_Liver_None_GSE57214	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.63535
laminin-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.481661
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.1487
ME-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10800016-table_s3_20230913_ddad186.xlsx-DUX4-aff_II-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
NAMALWA	CCLE Cell Line Gene CNV Profiles	1.0	1.38991
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886392
BRD-K16802067	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67815
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043256
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUIT-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7250-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lateral intermediate part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01889
abnormality of the fundus	GWASdb SNP-Phenotype Associations	1.0	0.195024
Prostate adenocarcinoma_PRAD_TCGA-XJ-A9DX-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.123949
Cytoskeleton	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
dorsomedial hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.84951
BRD-A53271750	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1773
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00563
guanfacine-4660	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
stratum pyramidale of rostral CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.876033
POU5F1-18692474-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-51-6867-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPMI 8226	BioGPS Cell Line Gene Expression Profiles	1.0	2.41625
IZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.38902
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95704
EP300_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.247
NFYB-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-1592-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4710-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.129919
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2PI-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5187
Kdm1a_KD_GDS5055_275_mouse_3T3-L1 preadipocytes - 48h	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.96643
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K07160586	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03908
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.887316
496100543_FWM_probable Alzheimer's disease_TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.41381
BRD-K64353626	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.1791
BRD-K08408085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04771
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046617
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.41988
FIH_Deficiency_GDS3769_511_mouse_Immortalized embryonic fibroblasts	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
PF-00875133-00-5923	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
SNUC4	DepMap CRISPR Gene Dependency	1.0	2.32134
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045777
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9007
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054009
BRD-K67016489	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04141
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4903
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.02449
Uterine horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
MDAMB436	CCLE Cell Line Gene Expression Profiles	-1.0	-2.80483
MYC-19079543-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21538
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
BT549	DepMap CRISPR Gene Dependency	1.0	4.91154
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051559
CRCGN015_MCF10A_48H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.69522
abnormality of cells of the erythroid lineage	GWASdb SNP-Phenotype Associations	1.0	0.259084
LN319	CCLE Cell Line Gene CNV Profiles	1.0	2.17104
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38809
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.868484
18559498-Table1	GeneSigDB Published Gene Signatures	1.0	null
PANC1005	DepMap CRISPR Gene Dependency	1.0	4.48307
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_ID_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K47599661	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.19733
BRD-K74701308	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08277
phenelzine-3884	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Fibrillar center	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.713
mRNA_ZSCAN4C_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
H3K27me3_H1 Derived Mesenchymal Stem Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06799
orlistat-6383	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormal glucose homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.212191
GSE130396_0_v_2_neratinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
rnf2_20805357_u2os_osteosarcoma_lof_human_gpl570_gse23035	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.267813
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1766
ncoa_22072566_ly2_lof_human_gpl570_gds4095	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.049527
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
colecalciferol-6656	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NA-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BCPAP	CCLE Cell Line Gene CNV Profiles	1.0	1.38746
MZ in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.956208
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0924
PMC8684775-CTM2-11-e640-s002.xlsx-Sheet1-Table_S3_MAF_file_of_the_CCS_samples_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107131
CRCGN017_MCF10A.WT.HP_24H:O19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.4471
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.371381
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09052
NCI-H650	COSMIC Cell Line Gene Mutation Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050789
OCUM1	DepMap CRISPR Gene Dependency	1.0	3.88788
mitochondrial membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.166884
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053736
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.889
BRD-K97707303	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10087
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863805
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8165
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5689-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
transitional cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.704764
Bonemarrow	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.25975
BRD-K42663584	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15302
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5691
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN015_MCF10A.TP53.M_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.8034
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0504
CRCGN016_MCF10A.TP53.M_24H:P20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.09559
BRD-K78712486	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73887
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0283
BRD-K61753872	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33391
BRD-K91084609	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48607
kawain-4693	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
HLF	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49861
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PCGF4-22325352-293T-REX-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K45138525	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.50204
CRCGN015_HEPG2_48H:J22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.51605
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2368
A-VN-1203-2004(H5N1)_Day1-10^2pfu_22074594_GSE33263	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.08189
erg_19359602_huvec_lof_human_gpl570_gds3557	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-1.05946
NOS1	DepMap CRISPR Gene Dependency	1.0	5.35767
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73112
GSE163240_2_v_4_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
nervous system disease	GWASdb SNP-Disease Associations	1.0	0.052746
lysosome	LOCATE Predicted Protein Localization Annotations	1.0	null
KPNYN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49472
BRD-K49207204	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28363
sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187419
BRD-K00265832	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05878
celecoxib-482	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
rofecoxib-251	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31878
outer CP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.927522
CRCGN015_MCF10A.WT.HP_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.56354
H3K27ac_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-A69950438	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.88283
496100434_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.40499
Brain Lower Grade Glioma_LGG_TCGA-HT-A74H-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN015_MCF10A_48H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.54912
layer IIIu of area 35r	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.78745
SW948	COSMIC Cell Line Gene Mutation Profiles	1.0	null
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.203933
chrysophanic-acid	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10994
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4038
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
HH	CCLE Cell Line Gene CNV Profiles	1.0	1.44517
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
brain ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114465
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.31877
BRD-K23835343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.46621
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4700-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100433_HIP_probable Alzheimer's disease_TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.51048
MDA MB435	BioGPS Cell Line Gene Expression Profiles	1.0	0.860106
Lung squamous cell carcinoma_LUSC_TCGA-43-A56U-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN014_HEPG2_3H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.3498
hsa-miR-4762-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26454
496100576_HIP_dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.1686
estradiol_homo sapiens_gpl570_gds3283	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976341
BRD-K49434474	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.028
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160387
BRD-K25595086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15648
BRD-K23499378	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63537
BRD-K57286317	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.36226
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1099
BRD-K86838462	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24789
LY-294002-5576	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5694
Klinefelter syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
CRCGN015_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49259
C3A	CCLE Cell Line Gene Expression Profiles	1.0	1.46989
ETS2_KD_GSE62168_259_mouse_mouse trophoblast stem cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
central nucleus of inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.62532
KMRC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3498
BRD-K25485483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23131
BRD-K09721398	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08537
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4858-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
XY body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.42
CRCGN015_HEPG2_48H:L01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.11831
H3K27me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
v91	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.931
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.234225
nafcillin-2983	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.400628
Pheochromocytoma and Paraganglioma_PCPG_TCGA-TT-A6YP-01A-21R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cerebral infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.239799
Hereditary spastic paraplegia 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.726
HEC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95704
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5242
BRD-K60531990	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.53536
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05419
Rd	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.434
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66S-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K67328514	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61643
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.459918
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8903
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0724
KCIMOH1	DepMap CRISPR Gene Dependency	1.0	7.58142
obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.299092
BRD-K03213425	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16211
BRD-K71671197	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24926
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3519
HCC38	CCLE Cell Line Gene Expression Profiles	1.0	2.43628
abnormal hemoglobin	GWASdb SNP-Phenotype Associations	1.0	0.588613
all	GWASdb SNP-Phenotype Associations	1.0	0.044872
BL70	CCLE Cell Line Gene Expression Profiles	1.0	1.82963
CTCF	ENCODE Transcription Factor Targets	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.0863
organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042609
Lung adenocarcinoma_LUAD_TCGA-50-5072-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO792	CCLE Cell Line Gene Expression Profiles	1.0	1.82977
Lung adenocarcinoma_LUAD_TCGA-NJ-A55R-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K12336887	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.575
DPY-21335234-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4378
Lung squamous cell carcinoma_LUSC_TCGA-90-A4EE-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RAB3A_KO_GDS2483_700_mouse_Cortex	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.256
IZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.938536
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3902
OVCAR8	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.07391
BRD-K71472853	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.73106
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2259
SARC9371	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H2BK15ac_H1	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
496100494_HIP_no dementia_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.66617
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5187-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.WT.HP_24H:N15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.22375
Liver hepatocellular carcinoma_LIHC_TCGA-UB-A7ME-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7765
IPC-298	COSMIC Cell Line Gene Mutation Profiles	1.0	null
disease	GWASdb SNP-Disease Associations	1.0	0.044085
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.48848
U343	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
skeletal muscle	HPA Tissue Protein Expression Profiles	1.0	1.62435
BRD-K04695511	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17887
Bgm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.79
496100392_HIP_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.35601
BRD-A73590800	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31255
BRD-K14801883	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83492
BRD-K44946060	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38274
CRCGN011_HEPG2_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.434
WAOSEL	DepMap CRISPR Gene Dependency	1.0	3.25549
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4845-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IZ in dorsomedial extrastriate cortex (V2)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.910601
CD34+	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.25251
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	1.4883
BRD-K68605096	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18047
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.260538
IZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.905281
H3K9me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K97537859	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06546
BRD-K84015265	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07994
levocabastine-hcl	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.6879
SYNCRIP_OE_GDS1886_83_human_THP-1 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00457
CRCGN011_HEPG2_24H:L12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.91195
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2239
BRD-K04873321	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.75937
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40243
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.31587
hsa-miR-326	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0654
HCT15	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.921655
mRNA_DLX3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
GSE115542_2_v_3_digoxin_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K4me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_Rectal Mucosa	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K77320034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25497
BRD-K98441254	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36811
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.74455
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6295
HNFA-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
clidinium	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57769
Adrenalgland	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.0544
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065801
raphe obscurus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03516
BRD-K42976515	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33474
Biceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.879
BRD-K62833556	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00051
bile duct disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.063369
BRD-K73942403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05605
pou5f1_16518401_mesc_lof_mouse_gpl1261_gds1824	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.213634
mitochondrion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.189222
BRD-K88099511	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3566
mRNA_ASCL2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
colon	HPA Tissue Protein Expression Profiles	1.0	0.8605
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041777
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.19942
MZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04047
BRD-A52024592	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56068
BRD-K92770212	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24152
CRCGN008_HEPG2_24H:K02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.1142
MOTN1	CCLE Cell Line Gene CNV Profiles	1.0	1.46618
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.887316
cyclocytidine	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83189
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6589
cell	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03413
AKT1_OE_GDS2308_499_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
eye and adnexa disease	GWASdb SNP-Disease Associations	1.0	0.116816
COLO678	DepMap CRISPR Gene Dependency	1.0	3.2998
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5538
CRCGN011_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.7084
BRD-K49473928	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.21018
mRNA_POU5F1_16767105	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
BRD-K48710089	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17972
mRNA_JARID2_20075857	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
MS751	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intestinal obstruction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.32009
H4K20me1_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K11548496	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63892
ZFX_02_172	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.16993
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936547
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.21419
outer CP in midcingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.828382
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06799
BRD-K04696500	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11168
IALM	CCLE Cell Line Gene CNV Profiles	1.0	1.51462
CRCGN015_HEPG2_48H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.5807
CRCGN015_MCF10A.TP53.M_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.2612
vomeralnasalorgan.VMO.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.34569
BRD-K34639069	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03748
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2575
SCYL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.03484
CRCGN009_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.93956
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN016_MCF10A.WT.HP_24H:M01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.87479
Lung squamous cell carcinoma_LUSC_TCGA-90-A4ED-01A-31R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
frontalcortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.07891
CIB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38548
BRD-K61020385	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01262
LRIG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84844
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K09523238	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01805
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	2.18276
BRD-K20024676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.71307
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425726
CRCGN017_MCF10A.WT.HP_24H:K16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.2074
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_Symbol_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
outer CP in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.34318
BRD-K92891227	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22358
496100519_HIP_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.09356
Sarcoma_SARC_TCGA-FX-A2QS-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE-450	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.2881
Lung adenocarcinoma_LUAD_TCGA-69-8255-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TE-671 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.751
CRCGN013_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.89835
VZ in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.10095
hydroxyprogesterone	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.53552
PMC8500868-401_2021_2354_MOESM5_ESM.xlsx-GEP_PATZ1-Gene_Symbol_PATZ1	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH2106	CCLE Cell Line Gene Expression Profiles	-1.0	-1.62021
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.039339
mRNA_NANOG_16767105	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
BRD-K80761414	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10105
cortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.873551
homosalate-3797	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE153871_0_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
morbid obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.299092
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_symbol_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K21997380	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.0488
KMS21BM	CCLE Cell Line Gene Expression Profiles	1.0	2.04754
Pheochromocytoma and Paraganglioma_PCPG_TCGA-PR-A5PF-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
oxprenolol-7225	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K25923961	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34946
BRD-K19302998	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16736
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044132
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041161
BRD-K56870772	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26272
Lung adenocarcinoma_LUAD_TCGA-49-6761-01A-31R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nortriptyline-6003	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
mesentery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232881
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976341
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4797
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
COLO201	DepMap CRISPR Gene Dependency	1.0	2.08791
17683608-TableS2	GeneSigDB Published Gene Signatures	1.0	null
laminin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.329461
vancomycin-4423	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-4941-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HM-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045695
vegetative cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232599
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048213
BRD-K27584103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05387
CRCGN016_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.09592
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4861-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056429
BRD-K05584347	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45469
BRD-K96054771	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03983
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3891
SG in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.53147
Acute Myeloid Leukemia_LAML_TCGA-AB-2859-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K07697589	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29377
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461078
BRD-K17395396	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64976
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843097
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IA-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30527
MSTN_DEPLETION_GDS3637_94_mouse_mature skeletal muscle	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.640023
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8289
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4344
CRCGN014_HEPG2_24H:H05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.80157
BRD-A78085235	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52983
mRNA_ESX1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
CRCGN016_MCF10A.TP53.M_24H:O21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.33876
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5201-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AKT1_OE_GDS2308_498_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
CRCGN015_HEPG2_48H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.56533
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043415
BRD-K43834805	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04272
CRCGN016_MCF10A.TP53.M_24H:F05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.18044
MZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.915816
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863805
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5744
CRCGN016_MCF10A.TP53.M_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.83136
basal lamina	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.173003
KAP1-27257070-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
VZ in midcingulate neocortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11783
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4865-01A-02R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.536183
vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.0039
CRCGN015_HEPG2_48H:H01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.20741
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.59666
medial nucleus of pulvinar	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14716
lorglumide-5619	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.83275
outer CP in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.53828
BRD-K98637033	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18567
hsa-miR-330-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
BRD-K45153693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34203
valproic acid_mus musculus_gpl6246_gse23957	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K67082570	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34135
mRNA_SOX2_16767105	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
leukorrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.49526
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390044
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5115-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A706-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rhabdomyosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.744
mitochondrial inner membrane peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.375818
BRD-K05474024	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29757
oocyte	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46784
BRD-K37316418	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24797
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2915
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.863805
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1435
Azoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051588
LIVF001-017	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.22998
KYSE-70	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HDAC2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.16838
CRCGN016_MCF10A.WT.HP_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.54168
KLE	CCLE Cell Line Gene Expression Profiles	1.0	3.40799
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5529
NCIH1930	CCLE Cell Line Gene Expression Profiles	1.0	1.82443
dystrophin-associated glycoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.386593
BRD-K64728664	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02189
BRD-K16695519	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.25227
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2988
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.157929
VZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.875436
BRD-K41355409	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.55745
BRD-K74688087	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17205
CRCGN014_HEPG2_24H:I02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03431
BRD-K67344967	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1273
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976341
inner SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.47797
ITK_knockout_241_GSE12465	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.29611
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070218
H3K9me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060181
AQP11_Deficiency_GDS3395_578_mouse_Kidney	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8207
CRCGN015_HEPG2_48H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.54202
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.849
CRCGN015_MCF10A.WT.HP_24H:D24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15339
BSX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2663
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.886392
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.392
glucose metabolism disease	GWASdb SNP-Disease Associations	1.0	0.490839
CRCGN016_MCF10A.TP53.M_24H:E17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.43241
protein complex	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
BRD-K14359826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.90686
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.36545
ParietalLobe	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.08223
meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180652
Sarcoma_SARC_TCGA-X6-A7WC-01A-12R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0697
abnormality of the posterior segment of the eye	GWASdb SNP-Phenotype Associations	1.0	0.195024
NB12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ARID3A	JASPAR Predicted Transcription Factor Targets	1.0	null
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43624
CRCGN017_MCF10A.WT.HP_24H:N21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6566
CRCGN015_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.94584
abnormality of the kidney	GWASdb SNP-Phenotype Associations	1.0	0.588613
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47669
496100478_HIP_dementia_TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.95711
cebpa_22442349_pbmc_lof_human_gpl570_gds4407	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.858269
CRCGN012_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.2087
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.39999
BRD-K27849471	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13609
BRD-K43224838	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20617
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-2.19489
H3K4me3_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N8-A56S-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.455284
TE6	DepMap CRISPR Gene Dependency	1.0	2.52564
cytoskeletal part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
lateral ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.155294
middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.282582
interleukin-18 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.723
KDM1A_KD_GDS5055_457_mouse_adipose tissue	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
MEL-HO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K29298614	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20282
HLC1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.5722
BRD-K92378241	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11409
CRCGN015_MCF10A_48H:E21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.31881
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44127
Actin cytoskeleton	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.486
SuperiorCervicalGanglion	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.35922
KYSE-520	COSMIC Cell Line Gene Mutation Profiles	1.0	null
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051378
H3K4me3_cardiac fibroblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CRCGN016_MCF10A.TP53.M_24H:F14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.81479
BRD-K16605233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61581
HEPG2	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.84107
urinary system disease	GWASdb SNP-Disease Associations	1.0	0.183475
BRD-K67096761	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.44848
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	1.0	1.36975
BRD-K85401814	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46015
pimosertib	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63221
VZ in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.1417
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56166
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046055
chromosome, subtelomeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.497
CRCGN015_HEPG2_48H:B11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.09168
BRD-K12864860	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.66538
Derlin-1 retrotranslocation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.94571
BRD-K15174326	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.117
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
hsa-miR-4287	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
endocrine organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.078728
HCC1143	CCLE Cell Line Gene Expression Profiles	-1.0	-1.98363
CRCGN014_HEPG2_3H:J22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.4247
KM12	CCLE Cell Line Gene Expression Profiles	1.0	1.41513
CREB1_01_04	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.28051
BRD-K73032790	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39254
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80885
BRD-K30310008	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.82588
c2c12	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.09913
IGR-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7104
HMEL	CCLE Cell Line Gene Expression Profiles	1.0	2.13763
BRD-K29039402	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18725
BRD-K48019220	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.12371
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0316
CD56+_NKCells	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.00781
BRD-K47200630	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24128
BRD-K72774661	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.1789
inner CP in (rostral) midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.839503
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.064154
SIMA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54778
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1898
BRD-K71575663	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1329
496100584_HIP_probable Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.64042
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.18
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9685
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3380-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE147876,GSE147877_4_v_7_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0164
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3626
deep layers of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02545
GSE173201_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
IBMX	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.16653
IZ in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.0042
rostral subdivision of paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.65845
CRCGN016_MCF10A.TP53.M_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.39659
mRNA_MSC_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Hamstring muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.813
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.333033
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.713666
PMC9950457-mmc3.xlsx-GRHL2_binding_sites-RBBP8NL_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN014_HEPG2_24H:J18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9684
BRD-K15160697	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2738
thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.077601
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.296013
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07755
CRCGN012_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.20317
ethisterone-3864	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.173548
BRD-K41141507	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.60217
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE102870_5_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Uterus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.989225
LB771HNC	DepMap CRISPR Gene Dependency	1.0	2.72522
abnormality of the eye	GWASdb SNP-Phenotype Associations	1.0	0.085716
GSE147876,GSE147877_2_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K67484361	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08997
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.22381
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.56957
PPP1R1A_KO_GDS1920_708_mouse_hippocampus	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
fertilizedegg	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
PMC11216401-Supplemental_figures.pdf-4-KLF17_KLF17	Rummagene Transcription Factor Associations 2026	1.0	null
RMI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41829
CRCGN016_MCF10A.TP53.M_24H:N19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.045
H3K9me3_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MHH-NB-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989533
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057972
Prostate adenocarcinoma_PRAD_TCGA-HC-A48F-01A-11R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K99250186	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.57746
IM95	DepMap CRISPR Gene Dependency	1.0	5.85611
CRCGN017_MCF10A.WT.HP_24H:E10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.5383
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.1738
tretinoin-224	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
D-247MG	COSMIC Cell Line Gene Mutation Profiles	1.0	null
overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
peritonitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160761
choroid plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.195704
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4103
thiamphenicol-glycinate	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.25905
APPBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13722
BRD-K80073743	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22111
Rectum adenocarcinoma_READ_TCGA-DC-4749-01A-01R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TOV21G	CCLE Cell Line Gene Expression Profiles	-1.0	-1.73083
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2617
MYC	ChEA Transcription Factor Targets	1.0	null
BRD-K07479774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02644
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9967
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050715
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.045127
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072509
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.989533
valproic acid_homo sapiens_gpl96_gds1050	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
abnormality of the retina	GWASdb SNP-Phenotype Associations	1.0	0.588613
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.262664
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936547
BRD-K31147195	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.7361
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8967
BRD-K26734305	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.294
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5000-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K89537738	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42353
CRCGN017_MCF10A.WT.HP_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.9082
CRCGN015_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.39268
MAGEF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64712
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00247
BRD-K40474424	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.711
intracellular organelle part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
thyroid adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.529994
CRCGN017_MCF10A.WT.HP_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.22255
BRD-K17062413	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.48641
Sarcoma_SARC_TCGA-HS-A5N9-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.81081
BRD-K47707657	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65375
GSE264621_1_v_6_secretin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3308-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE214212_2_v_1_chd6_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K9me3_Brain Inferior Temporal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.713547
outer CP in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.825161
BRD-K07740919	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.02178
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A5W6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SLC39A13_Deficiency_GDS3485_570_mouse_Chondrocytes	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
ajmaline-2899	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
UMC-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU216	CCLE Cell Line Gene Expression Profiles	1.0	1.43448
BRD-K83895653	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.55906
REC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44758
cell part	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
diabetes mellitus	GWASdb SNP-Phenotype Associations	1.0	0.588613
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4576
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
CRCGN011_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.6632
BRD-K12440008	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11365
E2F1-18555785-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-512-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
RCM1	DepMap CRISPR Gene Dependency	1.0	4.7228
BRD-K00348196	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.90588
cyproterone-6124	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.68541
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4992-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
rt-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.765296
mRNA_TCF3_20139965	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
GSE165678_4_v_5_stat5a_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100355_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.26345
CRCGN016_MCF10A.WT.HP_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.6491
BRD-K08702524	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1396
heart muscle	HPA Tissue Protein Expression Profiles	1.0	1.62435
GSE150055_0_v_1_melphalan_human	RummaGEO Drug Perturbation Signatures	1.0	null
HT-29	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K90797575	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46405
retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.230063
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843097
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43269
CRCGN017_MCF10A.WT.HP_24H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9792
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0896
BRD-A26583774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49236
BRD-K99331577	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27112
layer IIIa of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27323
MYC-19079543-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K9ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
pedunculo(pontine) tegmental  nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.860208
BRD-K76980944	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05171
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069444
TT2609C02	CCLE Cell Line Gene Expression Profiles	-1.0	-2.0939
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CRCGN015_MCF10A.WT.HP_24H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.11
berry	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.657866
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041316
CRCGN014_HEPG2_3H:N09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.4274
BRD-A25243629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04191
CRCGN010_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.73075
carbohydrate metabolism disease	GWASdb SNP-Disease Associations	1.0	0.490839
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68405
Vastus medialis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.728
BHY	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K33953218	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10667
diabetes mellitus	GWASdb SNP-Disease Associations	1.0	0.686763
BRD-K70343553	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15985
CRCGN015_HEPG2_48H:C01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.16724
BRD-K55343182	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18516
BRD-K78612514	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09598
C32	COSMIC Cell Line Gene Mutation Profiles	1.0	null
interpeduncular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.22912
hsa-miR-4755-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MX-05A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
BRD-K47686040	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16608
MM1S	CCLE Cell Line Gene Expression Profiles	1.0	1.61193
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
otitis media	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.335778
CRCGN016_MCF10A.TP53.M_24H:C10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13019
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.4653
RBPJ-21746931-IB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4638-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.271952
CDX2-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H3K9ac_Penis Foreskin Keratinocyte Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.442194
RT4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40278
GSE102870_11_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	1.0	null
BRD-K81120201	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63515
CRCGN008_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.36725
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074518
mRNA_SOX9_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
BRD-K28937085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.564
retroparafascicular area of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.1538
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
hsa-miR-3135	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
BRD-K73722380	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33171
Prostate adenocarcinoma_PRAD_TCGA-G9-6362-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1872
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.095645
CRCGN016_MCF10A.TP53.M_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.15766
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12608
REH	DepMap CRISPR Gene Dependency	1.0	2.22329
BRD-K01615361	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29825
Lung adenocarcinoma_LUAD_TCGA-05-4432-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K76477096	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07545