association	dataset	threshold value	standardized value
negative regulation of biosynthetic process	GO Biological Process Annotations 2015	1.0	null
regulation of gene expression	GO Biological Process Annotations 2015	1.0	null
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93032
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4062
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.264
HSC2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24291
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7885
RBPJ-21746931-IB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RNA polymerase II transcription repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.809
regulation of cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
POU2F2	JASPAR Predicted Transcription Factor Targets	1.0	null
NCOR-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC10774440-41531_2023_624_MOESM3_ESM.xlsx-MLi2_TRAPD_P_DOM_PD_0_05_allele-Gene_refGene_SOX10	Rummagene Transcription Factor Associations 2026	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.42031
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.523
negative regulation of cell differentiation	GO Biological Process Annotations 2015	1.0	null
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_symbol_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17085
regulation of nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
regulation of cell death	GO Biological Process Annotations 2015	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
NMCG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.28755
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.835
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40215
OTX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5855
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8696
ZBTB33_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
hsa-miR-651	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
UACC812	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.566224
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.01411
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
negative regulation of cell death	GO Biological Process Annotations 2015	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8085
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3151
regulation of developmental process	GO Biological Process Annotations 2015	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8864
GRHL2-25758223-PLACENTA-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55294
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1666
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89082
negative regulation of cell communication	GO Biological Process Annotations 2015	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45257
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2791
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negative regulation of nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
negative regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
receptor binding	GO Molecular Function Annotations 2015	1.0	null
regulation of apoptotic process	GO Biological Process Annotations 2015	1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.69132
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5306
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
SNU1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42499
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5126
positive regulation of biological process	GO Biological Process Annotations 2015	1.0	null
Perturb_299_KD_TPRX1/TPRX2/TPRXL_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.75693
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-4685-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
OVSAHO	CCLE Cell Line Gene CNV Profiles	1.0	2.07573
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.40794
negative regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
NFYA-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8353
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4933
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30204
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37663
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2665
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0338
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7845
HEC6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0135
hsa-miR-3156-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5519
HCC1806	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.688915
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
regulation of rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3094
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.0764
IGROV1	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
regulation of primary metabolic process	GO Biological Process Annotations 2015	1.0	null
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21664
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
POU2F2	ENCODE Transcription Factor Targets	1.0	null
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
biological regulation	GO Biological Process Annotations 2015	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1601
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05288
negative regulation of biological process	GO Biological Process Annotations 2015	1.0	null
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
negative regulation of signal transduction	GO Biological Process Annotations 2015	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.85681
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
regulation of signal transduction	GO Biological Process Annotations 2015	1.0	null
GABPA	ENCODE Transcription Factor Targets	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09535
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7873
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78941
KMH-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
negative regulation of rna metabolic process	GO Biological Process Annotations 2015	1.0	null
regulation of cell communication	GO Biological Process Annotations 2015	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59325
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.63639
transcription factor binding	GO Molecular Function Annotations 2015	1.0	null
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
NFYB-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.36558
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882489
SIX5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9609
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2197
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5189
UACC893	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.02402
TE9	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08748
FOSL2	ENCODE Transcription Factor Targets	1.0	null
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.0521
EBF1	ENCODE Transcription Factor Targets	1.0	null
JUN	JASPAR Predicted Transcription Factor Targets	1.0	null
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4464
TYK-NU	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SIX5	ENCODE Transcription Factor Targets	1.0	null
CDX2-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PAX5	ENCODE Transcription Factor Targets	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2905
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0075
Retinitis pigmentosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.375
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.52144
TCF3	ENCODE Transcription Factor Targets	1.0	null
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	1.34246
SCLC21H	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
hsa-miR-4305	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Autosomal recessive limb-girdle muscular dystrophy type 2B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04441
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07693
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
negative regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6296
regulation of cell differentiation	GO Biological Process Annotations 2015	1.0	null
PMC11474056-pnas.2404841121.sd01.xlsx-Supplemental_Table_8_Fig1G-H-Supplemental_Table_8_Transcriptomic_overlap_between_LPS_and_Sepsis_and_or_Tuberculosis_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
hormone receptor binding	GO Molecular Function Annotations 2015	1.0	null
MAFK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9518
OCUM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51653
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6114
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3205
negative regulation of developmental process	GO Biological Process Annotations 2015	1.0	null
negative regulation of signaling	GO Biological Process Annotations 2015	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.64742
hsa-miR-514b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22875
regulation of signaling	GO Biological Process Annotations 2015	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30204
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02971
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
GSE207863_0_v_1_hdac5_human	RummaGEO Gene Perturbation Signatures	1.0	null
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7969
hsa-miR-4469	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Adult astrocytic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.514
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU685	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64843
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.721
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.718011
hsa-miR-3679-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.39159
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
CEBPB	JASPAR Predicted Transcription Factor Targets	1.0	null
negative regulation of apoptotic process	GO Biological Process Annotations 2015	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0483
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7633
PMC10774440-41531_2023_624_MOESM3_ESM.xlsx-MLi2_TRAPD_P_DOM_PD_0_05_allele-GENE_SOX10	Rummagene Transcription Factor Associations 2026	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.543
hsa-miR-4328	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6904
EBC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE135244_0_v_1_trdmt1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE172458_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88452
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9868
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7087
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
negative regulation of rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0881
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63386
HNFA-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2638
regulation of transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40699
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3304
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40951
KNS60	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83931
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1701
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	1.46155
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
ZBTB33_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PBX3	ENCODE Transcription Factor Targets	1.0	null
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.67061
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.381
NUGC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49845
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1601
hsa-miR-1265	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.3538
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03047
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2222
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.93249
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.13284
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46001
regulation of nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21505
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5349
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6499
Facioscapulohumeral muscular dystrophy 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.168
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3682
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80275
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.151
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987452
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BCPAP	CCLE Cell Line Gene CNV Profiles	1.0	1.37902
BATF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.216
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
protein binding	GO Molecular Function Annotations 2015	1.0	null
regulation of programmed cell death	GO Biological Process Annotations 2015	1.0	null
hsa-miR-4287	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60942
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
negative regulation of cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7699
negative regulation of gene expression	GO Biological Process Annotations 2015	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16259
MOTN1	CCLE Cell Line Gene CNV Profiles	1.0	2.2711
SPI1	ENCODE Transcription Factor Targets	1.0	null
Endomysium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.693
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.43876
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75762
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.49232
regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867051
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3289
regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.18043
GSE217541,GSE217543_3_v_2_tet1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
negative regulation of nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49965
hsa-miR-3140-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
negative regulation of transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
positive regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
Mixed glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.158
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0617
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01013
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Facioscapulohumeral muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46865
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5769
hsa-miR-513c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
cullin-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
KYSE180	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7666
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36259
SNU899	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60008
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
regulation of cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26271
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12371
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
PRAME family	InterPro Predicted Protein Domain Annotations	1.0	null
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37346
negative regulation of programmed cell death	GO Biological Process Annotations 2015	1.0	null
hsa-miR-4762-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
hsa-miR-4293	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
hsa-miR-4700-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7472
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.2678
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16358
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32992
MDA-MB-435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.32802
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28801
negative regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
SNU423	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74221
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
ZNF140	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4853
hsa-miR-1197	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
positive regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0622
NAMALWA	CCLE Cell Line Gene CNV Profiles	1.0	1.3811
BATF	ENCODE Transcription Factor Targets	1.0	null
LN319	CCLE Cell Line Gene CNV Profiles	1.0	1.9256
negative regulation of retinoic acid receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
negative regulation of cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50028
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
negative regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25468
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5202
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8208
regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
PHF8-20622853-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MCF12A	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.27243
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
regulation of nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
hsa-miR-198	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6253
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.155
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7615
FOS	JASPAR Predicted Transcription Factor Targets	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25119
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7882
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.638895
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21868
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3912
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1086
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.816446
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1651
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45392
SIX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80573
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
regulation of rna metabolic process	GO Biological Process Annotations 2015	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-630	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30132
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.604
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868339
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.79742
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8507
MEWO	CCLE Cell Line Gene CNV Profiles	1.0	1.3498
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.55558
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62639
ETV2-25802403-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
negative regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
retinoic acid receptor binding	GO Molecular Function Annotations 2015	1.0	null
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	1.0	1.36373
regulation of retinoic acid receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.4758
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4085
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66561
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07693
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8127
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.38221
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.2683
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
YD8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89635
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0473
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.70647
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75762
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86641
ZBTB33_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DRM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.827
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6767
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
GATA6-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
SNUC4	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
regulation of biosynthetic process	GO Biological Process Annotations 2015	1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1247
HH	CCLE Cell Line Gene CNV Profiles	1.0	1.42714
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80275
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4646
hsa-miR-4445	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
MYB-26560356-CHIP-SEQ-TH1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.63303
PRAME family/Leucine-rich repeat-containing protein 14	InterPro Predicted Protein Domain Annotations	1.0	null
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9408
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPA-26348894-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.55958
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67439
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1782
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
negative regulation of nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
nuclear hormone receptor binding	GO Molecular Function Annotations 2015	1.0	null
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.9346