association	dataset	threshold value	standardized value
NCIH1836	DepMap CRISPR Gene Dependency	1.0	2.29224
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.45194
Brain Lower Grade Glioma_LGG_TCGA-QH-A870-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75762
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056405
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053041
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1263
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1487
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TB-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.165655
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044277
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.275794
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056774
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882489
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07693
bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.079463
l-1210 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539396
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.353763
Kibra-Ex-Mer complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.487
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.47968
HH	CCLE Cell Line Gene CNV Profiles	1.0	1.36914
NFKB1	JASPAR Predicted Transcription Factor Targets	1.0	null
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053754
TCF4-23295773-U87-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-69-8255-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056385
Stevens-Johnson syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.073
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
CBR4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55192
IGROV1	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094877
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3374
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
GSE125219,GSE125221_4_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
SUDHL10	CCLE Cell Line Gene CNV Profiles	1.0	1.80478
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
AKAP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98222
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUR-01A-21R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.174881
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16259
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
Prostate adenocarcinoma_PRAD_TCGA-H9-7775-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE111247_2_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Tongue epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
Prostate adenocarcinoma_PRAD_TCGA-EJ-7789-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
icosahedral viral capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.796062
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054167
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2905
CAB39	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76903
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02971
cerebral degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.104379
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072997
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7134
frontal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075389
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051056
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1984
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062447
Kidney renal papillary cell carcinoma_KIRP_TCGA-HE-A5NF-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26271
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4609
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.4694
coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.41465
aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083348
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
496100506_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.19485
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6881
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069243
Prostate adenocarcinoma_PRAD_TCGA-HC-7080-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
condensed chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.216111
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28801
AML193	DepMap CRISPR Gene Dependency	1.0	2.17376
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.069663
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258243
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.402144
viral nucleocapsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.410649
pancreatic duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.391553
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5814
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VC-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23353
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5031
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80275
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234878
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09535
SOCS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38532
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056782
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
496100315_TCx_no dementia_TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.50553
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.0264
Lung adenocarcinoma_LUAD_TCGA-05-4405-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
host cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.138935
Acute Myeloid Leukemia_LAML_TCGA-AB-3012-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.97206
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78941
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glycogen granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.766804
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2791
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04441
viral replication complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.22385
breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.08375
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2973
hypopharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.81018
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0812
pharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.507273
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056557
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.35246
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051852
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0178
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.923
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8161
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A3-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
beta-mannosidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.02524
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4154
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868339
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070672
cos cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18832
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VH-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SEMK2	DepMap CRISPR Gene Dependency	1.0	2.12871
SUDHL1	DepMap CRISPR Gene Dependency	1.0	2.60629
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8309
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6126
culture condition	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184506
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7250-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051794
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0134
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.672
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IM-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058396
leaf epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.30464
PMC4366019-pone.0116096.s005.xlsx-Primary_positives_NOT_retested-Unnamed_8_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7088
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YE-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
REH	DepMap CRISPR Gene Dependency	1.0	2.72736
LU135	DepMap CRISPR Gene Dependency	1.0	2.00398
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364139
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090418
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88452
Lung adenocarcinoma_LUAD_TCGA-55-6986-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04578
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058561
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.8848
lysosomal storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076962
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055436
Lung squamous cell carcinoma_LUSC_TCGA-51-6867-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHLA06ATRT	DepMap CRISPR Gene Dependency	1.0	2.07505
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LP1	DepMap CRISPR Gene Dependency	1.0	2.12851
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314046
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1293
LN319	CCLE Cell Line Gene CNV Profiles	1.0	1.79949
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042815
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.17657
NFYA-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1667
Lung squamous cell carcinoma_LUSC_TCGA-77-A5GA-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.07693
AMO1	DepMap CRISPR Gene Dependency	1.0	3.22036
D341Med	DepMap CRISPR Gene Dependency	1.0	2.10482
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22875
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05393
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8373
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68D-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-EF-5831-01A-01R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.404797
PMC12909843-41467_2026_68388_MOESM4_ESM.xlsx-fig3g-up-regulated_gene_expression_in_OTX2-KO_8CLCs_OTX2	Rummagene Transcription Factor Associations 2026	1.0	null
MYC-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
Liver hepatocellular carcinoma_LIHC_TCGA-UB-A7ME-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRIPT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59414
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046197
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158097
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057776
GPR25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34926
H3K9me3_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
protoxylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.206655
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7914
KMS34	DepMap CRISPR Gene Dependency	1.0	3.37474
biceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516104
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70P-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2082
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.228234
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80747
SF126	DepMap CRISPR Gene Dependency	1.0	2.53187
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34394
KMS11	DepMap CRISPR Gene Dependency	1.0	3.39278
synovia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.250953
fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062541
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051541
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.38326
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063943
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059248
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1ML-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052193
thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07949
myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.457109
Brain Lower Grade Glioma_LGG_TCGA-HT-8011-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-A7YW-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.544705
HNFA-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7924-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.21124
exocrine pancreas	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.213833
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106105
ZNF140	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7484
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054048
496100569_TCx_possible Alzheimer's disease_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07352
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.383637
NCIH1648	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54446
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67439
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051628
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.25259
cos-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340388
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7228
CTCF-20526341-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21868
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.347587
hirschsprung's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.668742
GSE111247_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.42031
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241196
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058796
KPNRTBM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53027
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
UHO1	DepMap CRISPR Gene Dependency	1.0	2.79465
ABRAXAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12141
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6022-01A-21R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21505
measles	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.40904
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50028
Prostate adenocarcinoma_PRAD_TCGA-HC-7738-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0122
BRCA1	JASPAR Predicted Transcription Factor Targets	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2991-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSU	DepMap CRISPR Gene Dependency	1.0	2.76998
FOXF2	JASPAR Predicted Transcription Factor Targets	1.0	null
RPL39L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75658
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7048-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.308118
ZBTB33_02_82	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.71882
brain infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.113436
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7705
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3608
pharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246442
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
vero cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.38326
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-YC-A8S6-01A-31R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21664
caryopsis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.853788
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054812
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051806
PHF8-20622853-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
female breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.587444
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
M07E	DepMap CRISPR Gene Dependency	1.0	2.36083
JUN_KO_GDS4205_294_mouse_B lymphoid cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.280012
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073003
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071288
PMC4366019-pone.0116096.s005.xlsx-Primary_positives_NOT_retested-Primary_S6P_positives_NOT_selected_for_retesting_with_the_4_individual_RNAi_used_in_the_intial_screen_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH747	DepMap CRISPR Gene Dependency	1.0	2.01926
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3154
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-2.5026
A375	DepMap CRISPR Gene Dependency	1.0	2.21558
Brain Lower Grade Glioma_LGG_TCGA-FG-A87Q-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9663
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7326
xylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.540188
astigmatism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.592895
tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.093105
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057637
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27498
MARVELD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50759
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17085
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
NR1I2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.61598
TMEM59L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54809
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.95432
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2653
COLO201	DepMap CRISPR Gene Dependency	1.0	2.86393
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
TCF4	ChEA Transcription Factor Targets	1.0	null
cullin-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Lung adenocarcinoma_LUAD_TCGA-44-A47A-01A-21R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6362-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cv-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18091
SW837	DepMap CRISPR Gene Dependency	1.0	2.08321
male breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606152
cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055727
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3649
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_symbol_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
adrenoleukodystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.513802
RCHACV	DepMap CRISPR Gene Dependency	1.0	2.95992
OCIMY7	DepMap CRISPR Gene Dependency	1.0	2.80473
NCIH1563	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46021
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.341
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5214
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12371
MOTN1	CCLE Cell Line Gene CNV Profiles	1.0	2.18069
SNU719	DepMap CRISPR Gene Dependency	1.0	2.2127
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25119
CTCF	ENCODE Transcription Factor Targets	1.0	null
GSE160817_7_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.233446
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.076005
AGS	DepMap CRISPR Gene Dependency	1.0	2.08415
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2835
496100356_TCx_probable Alzheimer's disease_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.73382
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5183-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lymphocytic leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075387
H9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.009
Prostate adenocarcinoma_PRAD_TCGA-G9-6354-01A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cerebral infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.177851
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63386
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
PAX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1181
forearm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.282837
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059676
H3K9me3_erythroblast_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2585
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042116
Brain Lower Grade Glioma_LGG_TCGA-KT-A7W1-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU410	DepMap CRISPR Gene Dependency	1.0	2.4635
PMC11216401-Supplemental_figures.pdf-15-ZNF280A_ZNF280A	Rummagene Transcription Factor Associations 2026	1.0	null
GATA6-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.54239
blood cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054211
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040765
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5443-01A-01R-1514-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TP63	JASPAR Predicted Transcription Factor Targets	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
amniocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.770685
OPM2	DepMap CRISPR Gene Dependency	1.0	2.04957
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.269043
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66S-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-91-6848-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059043
MFE-319	COSMIC Cell Line Gene Mutation Profiles	1.0	null
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.047938
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053569
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A20J-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lymphocytic leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070387
cycloplegia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.09419
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.396465
amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.395331
cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055284
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0621
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
Lung adenocarcinoma_LUAD_TCGA-99-8032-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
A431	DepMap CRISPR Gene Dependency	1.0	2.05974
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
P53-21459846-SAOS-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
Lung adenocarcinoma_LUAD_TCGA-49-4490-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86641
non-small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06673
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.80605
liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.257358
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.59023
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
flexor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
Acute Myeloid Leukemia_LAML_TCGA-AB-2980-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.0249
496100340_TCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.78983
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49965
496100525_TCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.42346
PHIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.27313
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.867051
Epi	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.267
KYSE510	DepMap CRISPR Gene Dependency	1.0	2.70409
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049676
Sarcoma_SARC_TCGA-X6-A7WC-01A-12R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041587
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.48292
NCIH1944	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49684
Brain Lower Grade Glioma_LGG_TCGA-DU-6407-02B-11R-A36H-07,TCGA-DU-6407-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0426
Lung squamous cell carcinoma_LUSC_TCGA-21-1071-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Copper levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.61549
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3N6-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ABCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.95509
insect labium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.992379
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	1.39983
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.5261
CHAGOK1	DepMap CRISPR Gene Dependency	1.0	2.08454
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.112773
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.55392
Prostate adenocarcinoma_PRAD_TCGA-J4-A67O-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100476_TCx_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.45518
syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.066073
viral outer capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.831843
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.793
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.307
Multimerin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.824
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063277
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052217
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264011
cleft palate	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220424
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
Prostate adenocarcinoma_PRAD_TCGA-HC-7078-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WM35	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SKMM2	DepMap CRISPR Gene Dependency	1.0	3.14352
Lung adenocarcinoma_LUAD_TCGA-05-4432-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052533
GPAA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39925
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
MDA-MB-435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.32802
Liver hepatocellular carcinoma_LIHC_TCGA-ZP-A9D4-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8853
496100473_TCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.65509
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220152
PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5F-Up_H3K27me3_DPY30_KD-Unnamed_12_AR	Rummagene Transcription Factor Associations 2026	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40699
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2808
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.439507
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03047
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162306
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44981
Lung adenocarcinoma_LUAD_TCGA-95-7567-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COV318	DepMap CRISPR Gene Dependency	1.0	2.55126
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30204
CDX2-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478534
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89082
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.8647
Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37663
spastic cerebral palsy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.870825
NAMALWA	CCLE Cell Line Gene CNV Profiles	1.0	1.32898
hamstring muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388535
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8
496100369_PCx_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.13322
Brain Lower Grade Glioma_LGG_TCGA-DU-5852-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1BM-01A-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.317679
OVSAHO	CCLE Cell Line Gene CNV Profiles	1.0	1.96271
JJN3	DepMap CRISPR Gene Dependency	1.0	2.92112
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045749
viral inner capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.19623
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249329
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057496
ST486	DepMap CRISPR Gene Dependency	1.0	2.78787
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
Kidney Chromophobe_KICH_TCGA-KL-8334-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161523
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8374
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109054
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
NFYB-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
496100284_FWM_probable Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.36956
takayasu's arteritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.59913
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067352
leaf lamina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4722
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.737206
KMS27	DepMap CRISPR Gene Dependency	1.0	2.93341
Acute Myeloid Leukemia_LAML_TCGA-AB-2862-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
refractive error	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.223165
496100552_PCx_possible Alzheimer's disease_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.24507
Sarcoma_SARC_TCGA-SI-AA8C-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9059
Rectum adenocarcinoma_READ_TCGA-CL-5917-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHP212	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9262
PRKACG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56549
leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122095
FARAGE	DepMap CRISPR Gene Dependency	1.0	2.39944
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044399
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309697
PPP6R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50781
STAT5_01_279	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59291
cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.333218
Adrenocortical carcinoma_ACC_TCGA-OR-A5K0-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059516
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GY-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
fruit	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.109968
cerebral palsy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.472604
ZNF124	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75582
GTF3C4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.99215
NCIH292	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67645
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065502
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0908
needle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.478923
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056043
SCLC21H	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.1942
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2487
hematopoietic cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057452
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0011
kidney cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.080094
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2874
GSE125219,GSE125221_3_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133504
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9778
H3K27ac_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
AR	ChEA Transcription Factor Targets	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051146
joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.321685
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IS-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6433-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.282225
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4723-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218613
Sarcoma_SARC_TCGA-SG-A6Z7-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RH-01A-12R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7475-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929663
forelimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.37087
SUDHL4	DepMap CRISPR Gene Dependency	1.0	2.68045
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6962
CASP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86666
synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.09601
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1086
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SN-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7602-01A-21R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.321685
HB1119	DepMap CRISPR Gene Dependency	1.0	2.35974
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.072156
Brain Lower Grade Glioma_LGG_TCGA-DU-A7TB-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glycogen metabolism disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
other organism part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.102066
Prostate adenocarcinoma_PRAD_TCGA-CH-5753-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE223609,GSE223610_0_v_1_kdm6a_human	RummaGEO Gene Perturbation Signatures	1.0	null
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1766
nci-h226br cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.380251
stele	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.456828
ICC9	DepMap CRISPR Gene Dependency	1.0	2.04375
ZFP41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7474
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1601
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8455
MS751	COSMIC Cell Line Gene Mutation Profiles	1.0	null
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048509
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052804
megacolon	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.641433
KPNYN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.56246
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.289582
Te	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.062
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.121631
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
orofacial cleft	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.169091
SUPT1	DepMap CRISPR Gene Dependency	1.0	2.57458
host intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.22385
cervical cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.312827
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057632
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.5208
SH3D19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.35436
RBPJ-21746931-IB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1701
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05288
procambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.130456
Primitive endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.943
496100443_HIP_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.93877
NCIH196	CCLE Cell Line Gene CNV Profiles	1.0	2.24529
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40951
cerebral lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059206
Rectal benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30204
arthropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.081129
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.01411
GSE160817_5_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9189
GRHL3_01_336	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.5878
host cell nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.22385
lung fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.330094
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A5W6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30132
physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.07296
thigh muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.151727
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.462772
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.302478
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.57296
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057873
ALDH1A2_KO_GDS4836_290_mouse_anterior embryonic brain	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
OTX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.603
496100428_TCx_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.58262
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.232836
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1636
H3K27me3_CH12.LX_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
IMR32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.84845
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044619
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051997
diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64854
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.042
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
496100390_PCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	8.92547
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041066
KYSE410	DepMap CRISPR Gene Dependency	1.0	2.74352
BT549	DepMap CRISPR Gene Dependency	1.0	2.38666
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
UPCISCC026	DepMap CRISPR Gene Dependency	1.0	2.77808
Arsenic	CTD Gene-Chemical Interactions	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4819
Lung squamous cell carcinoma_LUSC_TCGA-34-5241-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
GNL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86045
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.057358
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25468
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7581
CHP126	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71933
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041916
JVM3	DepMap CRISPR Gene Dependency	1.0	2.07176
Brain Lower Grade Glioma_LGG_TCGA-DU-7304-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7162
UACC257	DepMap CRISPR Gene Dependency	1.0	2.94713
NCI-H810	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976141
Lung adenocarcinoma_LUAD_TCGA-50-5072-01A-21R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KCIMOH1	DepMap CRISPR Gene Dependency	1.0	2.94526
eye accommodation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.974221
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.60295
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.073342
nci-h226 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.196845
acute myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.54393
tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.125551
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057612
RT4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44466
JUN	JASPAR Predicted Transcription Factor Targets	1.0	null
SEKI	DepMap CRISPR Gene Dependency	1.0	2.05403
GB1	CCLE Cell Line Gene CNV Profiles	1.0	1.91039
gut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075404
GSE207863_0_v_1_hdac5_human	RummaGEO Gene Perturbation Signatures	1.0	null
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9371
rheumatoid arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.185313
extrinsic cardiomyopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.353027
Acute Myeloid Leukemia_LAML_TCGA-AB-3001-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66561
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3824
multidrug-resistant tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.802385
Pancreatic adenocarcinoma_PAAD_TCGA-2L-AAQA-01A-21R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CF-A9FL-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
non-small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08303
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.73427
leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058983
abdominal aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.34334
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8002-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1601
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-49-6742-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RJ-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-MP-A4TH-01A-31R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7784-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261964
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93032
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987452
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16358
Lung squamous cell carcinoma_LUSC_TCGA-94-A5I6-01A-21R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057829
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
nasopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.472315
496100670_TCx_probable Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.28522
viral capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.492966
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4977
Trigeminal nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OCUM1	DepMap CRISPR Gene Dependency	1.0	2.8719
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.80275
arm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.157548
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45257
Morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.831
spastic hemiplegia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.23343
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.18043
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5201-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.054586
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75762
stoma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.485156
scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.274045
TCF12/HEB-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.46001
PABPC1L2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88186
Y79	DepMap CRISPR Gene Dependency	1.0	2.03725
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.1113
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.407832
Lung adenocarcinoma_LUAD_TCGA-64-5778-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
Trigeminal neuralgia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5136
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.33821
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3045
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048444
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.68083
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32992
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2744
KLHL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87587
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9773
SREBF1	JASPAR Predicted Transcription Factor Targets	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05073
P31FUJ	DepMap CRISPR Gene Dependency	1.0	2.30708
SIMA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63049
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8068
Lung squamous cell carcinoma_LUSC_TCGA-56-8083-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4255	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
GSE173201_2_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SCLC22H	DepMap CRISPR Gene Dependency	1.0	3.9939
prefrontal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.246442
glycogen storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352659
ARL16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81051
leukemia cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057281
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
virion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.344935
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223177
leukodystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192344
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CH-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bursitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.798692
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
Sarcoma_SARC_TCGA-X6-A7W8-01A-21R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.367876
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45392
Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5560-01A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO678	DepMap CRISPR Gene Dependency	1.0	2.35366
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59325
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.398735
FU97	DepMap CRISPR Gene Dependency	1.0	2.0574
Kidney renal papillary cell carcinoma_KIRP_TCGA-IA-A83V-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A85I-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
culture condition:antigen-presenting cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412011
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.875
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ETV1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34983
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259254
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051938
Brain Lower Grade Glioma_LGG_TCGA-QH-A86X-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-97-8176-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EI-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12297
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1102
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.738854
H2731	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100371_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	8.57267
WSUNHL	DepMap CRISPR Gene Dependency	1.0	2.24847
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975405
NCI-H1693	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.34371
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-2.21602
SEM	DepMap CRISPR Gene Dependency	1.0	2.70482
EPHX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38867
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.825268
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
plant reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099054
KMRC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37698
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.756156
carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158434
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051111
F36P	DepMap CRISPR Gene Dependency	1.0	2.17051
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2557
CPCN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88597