association	dataset	threshold value	standardized value
SW48	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A85I-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5K0-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SIX5	ENCODE Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-QU-A6IO-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194789
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KP-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-1265	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3546
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.691094
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.693311
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4761
female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042648
HCC1937	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.521327
Prostate adenocarcinoma_PRAD_TCGA-HC-7078-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5848
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4869
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33905
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0561
regulation of cell differentiation	GO Biological Process Annotations 2015	1.0	null
fetal membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072874
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4418
regulation of nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RV-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-4613-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
migraine with aura	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.470332
regulation of nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.394491
familial adenomatous polyposis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.32009
ZBTB33_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Perturb_248_KD_TPRX1/TPRX2/TPRXL_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.597
HGC-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.497
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3487
CAOV-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2943
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.699853
PMC8586238-41467_2021_26788_MOESM6_ESM.xlsx-S2A_CDE_genes-S2A_CDE_-_genes_of_the_two_CCD_genes_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868489
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A3MB-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.309335
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A4ZT-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13154
diaphragm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.322779
lysosome	LOCATE Predicted Protein Localization Annotations	1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
lung small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.392257
Acute Myeloid Leukemia_LAML_TCGA-AB-3005-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01001
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5736
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.1565
negative regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.93467
Pheochromocytoma and Paraganglioma_PCPG_TCGA-PR-A5PF-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071848
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.708
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IR-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.694946
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.982
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11554
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29762
RBPJ-21746931-IB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.991491
migraine without aura	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.625711
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.183
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VH-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060126
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8687
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054589
tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.24715
Prostate adenocarcinoma_PRAD_TCGA-HC-A6AO-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041268
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158097
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00039
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.244
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8014
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2023	1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9349
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33645
negative regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.87335
regulation of signal transduction	GO Biological Process Annotations 2015	1.0	null
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
proteasomal protein catabolic process	GO Biological Process Annotations 2023	1.0	null
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.751
Liver hepatocellular carcinoma_LIHC_TCGA-MI-A75G-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7788-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8883
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056075
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.302337
Liver hepatocellular carcinoma_LIHC_TCGA-XR-A8TG-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05457
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8951
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044068
glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.395235
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.204593
negative regulation of rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
regulation of cell death	GO Biological Process Annotations 2015	1.0	null
hsa-miR-3124-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Buccal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.814
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.167915
POU2F2	ENCODE Transcription Factor Targets	1.0	null
PRRX2	JASPAR Predicted Transcription Factor Targets	1.0	null
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074615
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.0877
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7492
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6761
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7072
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93513
endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.411283
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00141
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7636
positive regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Y-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-HS-A5N9-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1108
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.8108
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072812
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076588
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6925
bladder	GTEx Tissue Gene Expression Profiles	1.0	1.03976
pericarditis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.529994
Perturb_247_KD_TPRX1_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.93685
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3731
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054223
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0725
H2591	COSMIC Cell Line Gene Mutation Profiles	1.0	null
replication fork	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.200999
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.084981
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70N-01A-12R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6558
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044739
Brain Lower Grade Glioma_LGG_TCGA-FN-7833-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-5965-02B-11R-A29R-07,TCGA-FG-5965-02A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.216672
regulation of retinoic acid receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
hsa-miR-324-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RN-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8163
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11554
Brain Lower Grade Glioma_LGG_TCGA-HT-8564-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1166
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1396
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20855
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964551
Prostate adenocarcinoma_PRAD_TCGA-CH-5750-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4532
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040116
PRAME family/Leucine-rich repeat-containing protein 14	InterPro Predicted Protein Domain Annotations	1.0	null
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2023	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35336
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67508
MHH-NB-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876785
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2855
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1656
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.87335
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051183
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3335-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4527
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048647
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868489
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7784-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1772
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43974
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060863
Lung adenocarcinoma_LUAD_TCGA-44-6145-11A-01R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.659085
negative regulation of gene expression	GO Biological Process Annotations 2015	1.0	null
Lung adenocarcinoma_LUAD_TCGA-67-3772-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_299_KD_TPRX1/TPRX2/TPRXL_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.19405
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057354
SIX5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
negative regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20855
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11623
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9424
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04047
pelvic inflammatory disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622967
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.063572
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
SUM185PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.00972
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79082
hsa-miR-198	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056055
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.244
heart valve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.101716
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060743
aortic valve stenosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.325916
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.244
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4815
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2679
regulation of programmed cell death	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6367-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055867
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0979
benign mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220766
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042702
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134733
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.1509
reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.217012
LHCN-M2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.191
GP5D	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4751
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
negative regulation of biological process	GO Biological Process Annotations 2015	1.0	null
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3888
regulation of cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00039
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067968
ng-108-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590437
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.741316
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54095
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.8022
negative regulation of apoptotic process	GO Biological Process Annotations 2015	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71576
Lung squamous cell carcinoma_LUSC_TCGA-92-8064-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of rna metabolic process	GO Biological Process Annotations 2015	1.0	null
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7214
retinoic acid receptor binding	GO Molecular Function Annotations 2015	1.0	null
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19924
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918881
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2PI-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RP-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.46521
Lung squamous cell carcinoma_LUSC_TCGA-90-A4EE-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054852
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	172.872
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7876
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.793
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04379
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41999
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
aortic valve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.258064
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Z-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-P5-A72W-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.671
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040207
HT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
peritoneal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.498832
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8961
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3384
cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044949
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Lung adenocarcinoma_LUAD_TCGA-55-A48Z-01A-12R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5092-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2023	1.0	null
negative regulation of nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055316
GSE216238,GSE216241_0_v_1_tonsl_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.265849
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13154
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2743
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5201-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
negative regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.41999
Brain Lower Grade Glioma_LGG_TCGA-HT-8018-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.186902
receptor binding	GO Molecular Function Annotations 2015	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3796
tegmentum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935995
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PCGF4-22325352-293T-REX-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058546
thorax	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063255
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
protein binding	GO Molecular Function Annotations 2015	1.0	null
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.6517
intermittent claudication	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.543155
Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-3471-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4974
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.959
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3298
regulation of signaling	GO Biological Process Annotations 2015	1.0	null
amnion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11481
COLO-783	COSMIC Cell Line Gene Mutation Profiles	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12013
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.114711
negative regulation of rna metabolic process	GO Biological Process Annotations 2015	1.0	null
GATA3-26560356-CHIP-SEQ-TH2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8288
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935995
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.56674
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.817
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
negative regulation of retinoic acid receptor signaling pathway	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7783-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.806501
Brain Lower Grade Glioma_LGG_TCGA-HT-7873-01B-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20855
Prostate adenocarcinoma_PRAD_TCGA-HC-8265-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of apoptotic process	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX5	ENCODE Transcription Factor Targets	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62904
regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
positive regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
hormone receptor binding	GO Molecular Function Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25Z-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1341
600MPE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.77587
Liver hepatocellular carcinoma_LIHC_TCGA-ED-A459-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062947
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M8-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8589
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0462
SPI1	ENCODE Transcription Factor Targets	1.0	null
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2755
EP300	ENCODE Transcription Factor Targets	1.0	null
chromosomal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044118
regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9763
heart	GTEx Tissue Gene Expression Profiles	-1.0	-1.57409
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5560-01A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4058
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.10176
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63671
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3025
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.274
SIX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-QH-A6CW-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7314-01A-31R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2023	1.0	null
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3112
Brain Lower Grade Glioma_LGG_TCGA-HW-8320-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0663
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.6429
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4752
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1875
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8809
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0725
Lung squamous cell carcinoma_LUSC_TCGA-77-7140-01A-41R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MIF_DEPLETION_GDS3626_95_human_HEK293 kidney cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0725
H3K9me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8416
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8614
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2109
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.089154
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264696
benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040486
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043407
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050114
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
ubiquitin ligase-substrate adaptor activity	GO Molecular Function Annotations 2023	1.0	null
regulation of gene expression	GO Biological Process Annotations 2015	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056271
negative regulation of signal transduction	GO Biological Process Annotations 2015	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-4073-01B-02R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5093
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
ECC12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
negative regulation of cellular biosynthetic process	GO Biological Process Annotations 2015	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23781
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
HCC1482	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81527
anther	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.178921
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044275
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1359
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3296
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.3565
midbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.101311
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.28
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7257
hsa-miR-1913	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6111
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.429547
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.9131
Sarcoma_SARC_TCGA-DX-A8BX-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086937
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27314
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.500761
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.213322
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915639
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7093
medulla oblongata	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287803
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1612
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351485
regulation of cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3391
CTCF	ENCODE Transcription Factor Targets	1.0	null
pleural disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.309204
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058899
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057545
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7268
biological_process	GO Biological Process Annotations 2015	1.0	null
pleural cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.722398
Lung adenocarcinoma_LUAD_TCGA-38-4631-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7889
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0159
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043202
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2743
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6828
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M5-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.65652
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4892
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964551
negative regulation of signaling	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VP-A872-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6629
negative regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
negative regulation of cell differentiation	GO Biological Process Annotations 2015	1.0	null
negative regulation of cell death	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VN-A88L-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
negative regulation of nucleic acid-templated transcription	GO Biological Process Annotations 2015	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915639
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1926
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81527
abdomen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079657
Lung squamous cell carcinoma_LUSC_TCGA-22-1012-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06233
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056764
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.97156
Lung squamous cell carcinoma_LUSC_TCGA-NC-A5HE-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4555
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3139
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.912767
newborn respiratory distress syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.372958
negative regulation of cellular macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-46-6026-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
PMC10243915-uxad037_suppl_supplementary_table_s1a.pdf-83-ZNF134_ZNF134	Rummagene Transcription Factor Associations 2026	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05091
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Sarcoma_SARC_TCGA-SI-A71Q-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
thorax muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.274045
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8422
Prostate adenocarcinoma_PRAD_TCGA-CH-5766-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.078007
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3586
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A65F-01A-21R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.44276
negative regulation of biosynthetic process	GO Biological Process Annotations 2015	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060778
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.407
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.89
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083688
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R3-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC11376028-13578_2024_1300_MOESM1_ESM.xlsx-CCF_2nd_round-SYMBOL_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
biological regulation	GO Biological Process Annotations 2015	1.0	null
pleurisy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.463149
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54151
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z6-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1ML-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5418
negative regulation of nitrogen compound metabolic process	GO Biological Process Annotations 2015	1.0	null
vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-69-8255-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5873
Prostate adenocarcinoma_PRAD_TCGA-EJ-7789-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-AH-6549-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01128
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3343
lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049018
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2098
sporangiophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127586
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88736
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.283
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00041
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.22365
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.0973
Kidney renal papillary cell carcinoma_KIRP_TCGA-Y8-A8S1-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KAP1-22055183-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC8423434-mmc7.xlsx-KLF4_HENSM-Genes_n_2172_KLF4	Rummagene Transcription Factor Associations 2026	1.0	null
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6044
fetus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058565
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964551
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865294
malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.286519
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040423
peritoneum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.162873
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67481
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0168
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1008
amniotic cavity	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.193065
hsa-miR-3156-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3693
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53003
regulation of rna biosynthetic process	GO Biological Process Annotations 2015	1.0	null
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865294
regulation of developmental process	GO Biological Process Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KJ-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUR-01A-21R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042565
Perturb_246_KD_LEUTX_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-3.78952
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918881
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0725
GSE172458_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7196
negative regulation of programmed cell death	GO Biological Process Annotations 2015	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4988-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
spike	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223419
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4366
H3K9me3_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1219
ZNF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2545
pericardium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.496092
migraine	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160021
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A73F-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
Mouth floor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.236
regulation of cell communication	GO Biological Process Annotations 2015	1.0	null
CYP26A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09472
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.1922
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A3HD-01B-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
negative regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.18293
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6775
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4408
Sarcoma_SARC_TCGA-SG-A6Z7-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5884
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2368
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13154
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1071
PRAME family	InterPro Predicted Protein Domain Annotations	1.0	null
UBF1/2-26484160-CHIP-SEQ-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.683493
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-8311-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4641-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
BATF	ENCODE Transcription Factor Targets	1.0	null
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.509224
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.51842
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81S-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of nucleobase-containing compound metabolic process	GO Biological Process Annotations 2015	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N8-A56S-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-51-6867-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24461
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935995
chickenpox	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.60342
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.371
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865294
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.221
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19809
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37597
Brain Lower Grade Glioma_LGG_TCGA-S9-A6TZ-01A-21R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.99413
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4935
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935995
negative regulation of developmental process	GO Biological Process Annotations 2015	1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6962-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J4-A67N-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
eyelid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278955
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0631
respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056914
positive regulation of biological process	GO Biological Process Annotations 2015	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2844-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5132
binding	GO Molecular Function Annotations 2015	1.0	null
arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.119786
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34737
BCAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27404
SBC-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68D-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
regulation of biosynthetic process	GO Biological Process Annotations 2015	1.0	null
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849318
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.6583
regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2015	1.0	null
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985175
Pancreatic adenocarcinoma_PAAD_TCGA-IB-A6UG-01A-32R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25797
myelencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284253
Brain Lower Grade Glioma_LGG_TCGA-DB-A64X-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4691-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061536
conjunctiva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340019
negative regulation of transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45636
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915639
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A11A-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964551
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5678-01A-11R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1976
pleural tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.761454
Hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.936
cullin-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.299
lytic vacuole	LOCATE Predicted Protein Localization Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3458-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-MI-A75I-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.43012
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.550565
Lung adenocarcinoma_LUAD_TCGA-J2-A4AD-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059717
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.274
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3460-01A-02R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0587
negative regulation of cell communication	GO Biological Process Annotations 2015	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
regulation of transcription, dna-templated	GO Biological Process Annotations 2015	1.0	null
stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.160921
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070618
CAL-51	COSMIC Cell Line Gene Mutation Profiles	1.0	null
aortic valve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.430312
ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161523
microsporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194789
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5358
KLF5-20875108-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2642
BATF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.067447
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5183-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4546
Brain Lower Grade Glioma_LGG_TCGA-HT-8012-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049473
pericardium disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134997
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16471
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EJ-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.30631
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5885-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
amniotic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264011
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6038
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9735
nuclear hormone receptor binding	GO Molecular Function Annotations 2015	1.0	null
floret	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.106632
Prostate adenocarcinoma_PRAD_TCGA-HC-7080-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.9894
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06327
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043214
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07173
respiratory failure	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.134076
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935995
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849318
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
DND-41	COSMIC Cell Line Gene Mutation Profiles	1.0	null
transcription factor binding	GO Molecular Function Annotations 2015	1.0	null
Lung adenocarcinoma_LUAD_TCGA-38-4630-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918881
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EI-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5339
regulation of primary metabolic process	GO Biological Process Annotations 2015	1.0	null
CL-34	COSMIC Cell Line Gene Mutation Profiles	1.0	null
extrapulmonary tuberculosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.553627
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81527
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.876785
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.849318
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066544
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964551
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5315
Prostate adenocarcinoma_PRAD_TCGA-YJ-A8SW-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67105
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6048