association	dataset	threshold value	standardized value
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3187
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	311.621
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00011
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.27
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867311
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	516.542
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	463.68
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1162.08
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	569.826
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.04881
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
Zbtb2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	284.962
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.28474
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	755.401
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.24421
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29776
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10095
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4743
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	898.764
doxorubicin_homo sapiens_gpl6947_gse25741	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Learning disability	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	853.258
Neurod2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	766.765
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1859
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6052
UBF1/2-26484160-CHIP-SEQ-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Zfp961	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	170.508
GSE112962,GSE112963_2_v_1_ddx5_human	RummaGEO Gene Perturbation Signatures	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6161
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918097
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	971.074
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1195.96
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.866324
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.48761
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
Zfp809	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	862.766
VZ in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.0254
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.22357
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	679.073
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.417
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	3304.93
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952351
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	504.06
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	547.395
Jurkat	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.97175
liver	GTEx Tissue Gene Expression Profiles	1.0	1.62543
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.64152
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22572
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25513
496100499_PCx_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.22611
PMC10247733-41408_2023_863_MOESM4_ESM.pdf-591-ZNF774_ZNF774	Rummagene Transcription Factor Associations 2026	1.0	null
KOSC-2	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.13113
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1007.0
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41608
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	869.813
central nuclear group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.852808
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	403.851
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	117.795
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.047
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1242.09
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1613.9
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51261
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6721
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37618
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8069
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.832974
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	746.58
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0455
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.5455
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	405.503
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	626.955
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	513.479
SG in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.934895
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33663
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CDX2-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MutSalpha complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.023
bone marrow	HPA Tissue Protein Expression Profiles	1.0	1.24078
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03294
496100303_HIP_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.70322
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	164.378
P32-ISH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07169
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9152
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	375.846
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	523.83
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	521.215
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.45841
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7273
head and face region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.882761
Intercalated nucleus of amygdala	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01389
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8034
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	321.66
SP in rostral midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14563
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5411
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1871
Foxn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.8661
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	286.713
outer CP in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.28448
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.38503
posterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03555
GSE164726_0_v_1_phf10_human	RummaGEO Gene Perturbation Signatures	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4755
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	780.078
496100539_HIP_probable Alzheimer's disease_TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.47533
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16999
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.8504
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918097
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935333
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.81183
body of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.953548
WM-266-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42455
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935333
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.28054
Zic3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	497.29
caudal subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.7316
KP-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.56669
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1879.06
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.998622
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19931
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	748.456
PHF8-20622853-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HCC1806	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	486.655
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9207
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00113
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	232.228
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	620.134
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.88056
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	276.667
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	565.018
inferior olive, medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.18681
SP in perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.872125
inner CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.17001
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7383
MHH-NB-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864989
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903695
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.218
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952351
CTCF	ENCODE Transcription Factor Targets	1.0	null
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20863
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848016
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853531
GSE130620_1_v_0_kdm4b_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1277
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7037
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1092.99
HCC1482	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77244
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	535.545
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1225.36
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	703.07
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0416
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	777.874
MDAMB361	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.947244
496100392_HIP_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.52831
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848016
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.912138
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.859596
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82879
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6644
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5849
Arnt::Hif1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.7019
BICR 31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20863
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8516
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19816
IA-LM	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25513
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1490.95
OSC-20	COSMIC Cell Line Gene Mutation Profiles	1.0	null
496100547_HIP_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.1867
HD-MY-Z	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Smad4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	357.837
medial superior olive	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.10003
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.707773
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	732.176
VZ in orbital frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.907584
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22572
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Atf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	132.303
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	437.026
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
basolateral nucleus (basal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35753
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05895
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7567
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82879
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1343
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0341
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	580.672
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	492.56
SG in primary auditory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.69184
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	988.951
Expressive language disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.383
medial subdivision of area 10	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.79435
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	384.027
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59623
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5904
Wt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	797.621
Tcf12	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	439.777
Facioscapulohumeral muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952351
KARPAS-45	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.1898
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13157
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42023
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1111.89
SG in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02934
NCI-H1944	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864989
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63679
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	557.718
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	696.444
NCI-H2444	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Arntl	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	213.965
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	346.257
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.0361
Olig2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	210.191
Creb3l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	157.591
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06228
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	427.581
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.52995
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13157
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1981.19
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05895
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	586.641
CBP-20019798-JUKART-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Language disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.323
rostral presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.26838
Facioscapulohumeral muscular dystrophy 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9067
multiform (lateral) division of MD	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.82749
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.95782
MZ in retrosplenial cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.58191
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16697
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6083
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	335.091
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1882.61
PMC8481886-Table_1.xlsx-A_subsets-iMSC_UC_MSC_bone_marrow_MSC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
outer SZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.37358
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02534
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7228
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00011
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	491.963
SP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.068
Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	509.839
rostral putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.868928
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	546.443
Nrf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	111.633
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1293.13
olfactory part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06224
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6781
inferior olive, dorsal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02134
Isl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	273.481
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	740.04
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935333
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4907
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93545
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	781.682
ventral medial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.17214
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848016
496100520_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.02937
layer IIIa of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06386
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7932
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.13283
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6111
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1226.99
Zic1::Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	523.596
YT	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.35491
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	678.173
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05895
HNFA-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	386.359
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	424.103
GSE135030_8_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Gmeb1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.5465
magnocellular division of VA	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16087
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	855.142
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	433.74
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1377.51
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	748.069
ventral posterior inferior nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.907993
rostral (anterior) extramural migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.30137
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.984818
medial mammillary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.970248
testis	HPA Tissue Protein Expression Profiles	1.0	0.791134
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
parabigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.57173
stratum radiatum of rostral CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.22911
VMRC-LCD	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6274
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	749.398
facial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03744
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	627.334
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	659.544
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853531
Zfx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	386.507
Edinger-Westphal nucleus (accessory oculomotor nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.19187
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8413
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
Tfcp2l1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	702.221
Retinal telangiectasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.316
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9732
SUP-T1	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	2.05488
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9532
Hoxa11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	347.655
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.9079
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67486
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5634
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	230.482
CP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.961181
layer VI of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.30609
stratum pyramidale of rostral CA3	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.987563
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	667.319
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.24078
cullin-RING ubiquitin ligase complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
precommissural nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.90523
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.39571
central nucleus of inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.39023
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	619.147
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853531
outer SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.14257
CP in caudal hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.876435
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1367.92
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.93945
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903695
Ahr::Arnt	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.75
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935333
M/G1 phase-specific MADS box-forkhead transcription factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.202
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.886286
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10095
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	990.877
anteromedial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.93211
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	472.728
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35323
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8304
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	857.962
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8344
medial subdivision of central nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.57344
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25808
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.775
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5133
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	623.138
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.33923
tail of caudate	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.38109
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5625
outer portion of medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21313
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.44932
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952351
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3312
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0115
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.6567
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	364.604
IRF4-20064451-CD4+T-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0042
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.887
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6919
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	722.126
SP in caudal subicular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.01105
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67513
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	699.0
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935333
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2377
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.824981
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3083
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8689
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	542.369
SG in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02432
Joubert syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.479
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63602
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	862.341
SP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.91766
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2631
ATR_KD_GSE54268_664_human_MCF-10A	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.0122
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.4907
GSE168401_1_v_3_harmine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9032
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	887.358
SG in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.76148
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	461.139
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.903695
Asperger syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
KE-37	Sanger Dependency Map Cancer Cell Line Proteomics	1.0	1.91315
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.2752
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2537
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	932.864
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	793.474
RD	COSMIC Cell Line Gene Mutation Profiles	1.0	null
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2584
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1118.77
inner CP in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00005
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.727031
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.867311
496100304_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	9.98675
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	801.893
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	830.579
Attention deficit hyperactivity disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
PMC5735185-41467_2017_1200_MOESM4_ESM.xlsx-Table_S1-Choi_et_al_2016_DUX4_up-regulated_targets_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7506
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7909
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1006.37
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22572
GSE125014_6_v_2_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37981
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.0477
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.708
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77244
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13157
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1906.59
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3913
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	713.881
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10161
184B5	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.621445
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6111
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4203
Ciliopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.165
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918097
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	426.403
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1459.08
496100428_TCx_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.17938
medial preoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.32709
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8034
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1908
IZ in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.857848
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1879
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1334.12
MZ in rostral midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.03626
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3869
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0995
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	717.208
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.996674
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	666.737
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.51315
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Npas2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	105.01
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.791185
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1428.3
caudal portion of VFC (area 44)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.985113
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.32646
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5693
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33225
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	917.42
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05895
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4867
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.812465
IZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64907
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42023
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88759
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94601
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6008
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12016
JHU-011	Sanger Dependency Map Cancer Cell Line Proteomics	-1.0	-2.45299
Twist2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	190.821
rostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.945712
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	965.189
Gli2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	398.436
lateral subdivision of area 9	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.40656
Bhlha15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	651.417
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6493
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	524.284
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8409
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14899
follicle-stimulating hormone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.986
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.96843
GSE135030_3_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	820.426
IZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.853195
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	804.249
layer III of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.47376
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22631
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5466
DB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20863
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.79092
outer plexiform zone in extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.31787
Arnt	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.55
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26361
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	975.465
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7416
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45662
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27326
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952351
central part of CEl	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23414
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	678.368
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.77244
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	799.448
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	1075.67
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	852.72
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	352.958
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	526.958
ventral posterior lateral nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.999609
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6121
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.617
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	479.247
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	932.004