association	dataset	threshold value	standardized value
ubiquitin ligase-substrate adaptor activity	GO Molecular Function Annotations 2023	1.0	null
Mixed glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
Brain Lower Grade Glioma_LGG_TCGA-DU-6407-02B-11R-A36H-07,TCGA-DU-6407-02A-12R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ubiquitin-like ligase-substrate adaptor activity	GO Molecular Function Annotations 2025	1.0	null
YD8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89635
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053899
Brain Lower Grade Glioma_LGG_TCGA-HT-A74J-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MYC	ChEA Transcription Factor Targets	1.0	null
GA-04-SF76_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.47059
scale	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.767368
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A85I-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.52853
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TG-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4198
TE9	CCLE Cell Line Gene CNV Profiles	-1.0	-2.08748
PMC12179407-MCO2-6-e70261-s004.xlsx-down_TET3-KO_PQ_vs_Cas9_PQ-Unnamed_10_TET3	Rummagene Transcription Factor Associations 2026	1.0	null
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.23278
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046531
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.846867
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40699
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
hsa-miR-4305	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0496
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.838
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A1AE-01A-11R-A13Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.726097
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065038
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46865
enlarged seminal vesicle	IMPC Knockout Mouse Phenotypes	1.0	null
KYSE180	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7666
G140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.27028
increased circulating amylase level	IMPC Knockout Mouse Phenotypes	1.0	null
GSE221327_5_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-A46F-01A-31R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-2.01013
small testis	MGI Mouse Phenotype Associations 2023	1.0	null
increased male germ cell apoptosis	MGI Mouse Phenotype Associations 2023	1.0	null
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.4894
abnormal seminal vesicle morphology	MGI Mouse Phenotype Associations 2023	1.0	null
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051925
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.5607
Lung squamous cell carcinoma_LUSC_TCGA-56-8083-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PSMG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2836
enlarged seminal vesicle	MGI Mouse Phenotype Associations 2023	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0494
NUGC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49845
abnormal heart morphology	MGI Mouse Phenotype Associations 2023	1.0	null
BATF_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1815
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
GABPA	ENCODE Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-XR-A8TG-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.7741
IGROV1	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074264
SNU5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80573
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052665
Lung squamous cell carcinoma_LUSC_TCGA-92-8064-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100284_FWM_probable Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.7894
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042741
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21079
BE-71-AV63_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.489488
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
NCI-H2795	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.73907
496100327_PCx_possible Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.41782
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062349
COR-L88	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88452
hsa-miR-1265	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044874
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31055
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7639
Sarcoma_SARC_TCGA-X6-A8C2-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.92195
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-CNS_NB_FOXR2_deletions-Unnamed_2_FOXR2	Rummagene Transcription Factor Associations 2026	1.0	null
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0872
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.263722
tooth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.701489
SNU423	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74221
hsa-miR-3156-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00734
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
GSE205163,GSE205164_1_v_4_znf808_human	RummaGEO Gene Perturbation Signatures	1.0	null
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8473
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
poliomyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.74761
FOS	JASPAR Predicted Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A3WV-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174087
BATF	ENCODE Transcription Factor Targets	1.0	null
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4212
GSE185519_1_v_5_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6998
Prostate adenocarcinoma_PRAD_TCGA-G9-6363-11A-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal spleen morphology	MGI Mouse Phenotype Associations 2023	1.0	null
abnormal testis morphology	IMPC Knockout Mouse Phenotypes	1.0	null
GSE149096_2_v_3_ascl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
reproductive system phenotype	MGI Mouse Phenotype Associations 2023	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
hsa-miR-4700-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5926
cataract	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.199356
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.02943
enlarged spleen	IMPC Knockout Mouse Phenotypes	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A66S-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal recessive limb-girdle muscular dystrophy type 2B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.206
H2731	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
decreased testis weight	MGI Mouse Phenotype Associations 2023	1.0	null
Lung adenocarcinoma_LUAD_TCGA-J2-A4AD-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041871
increased circulating amylase level	MGI Mouse Phenotype Associations 2023	1.0	null
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9908
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.63303
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
Lung squamous cell carcinoma_LUSC_TCGA-51-6867-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1ML-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUN	JASPAR Predicted Transcription Factor Targets	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N8-A56S-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal jejunum morphology	MGI Mouse Phenotype Associations 2023	1.0	null
dermatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.066451
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7852
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10541
Perturb_248_KD_TPRX1/TPRX2/TPRXL_SRP361145	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-1.8307
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04235
HEC6	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
HEL9217	CCLE Cell Line Gene CNV Profiles	1.0	1.34246
hsa-miR-513c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2023	1.0	null
abnormal stomach morphology	MGI Mouse Phenotype Associations 2023	1.0	null
abnormal tail morphology	IMPC Knockout Mouse Phenotypes	1.0	null
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041835
Prostate adenocarcinoma_PRAD_TCGA-EJ-7314-01A-31R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-651	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2PI-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RNA polymerase II transcription repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.759
intracranial hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.3292
Uterine Carcinosarcoma_UCS_TCGA-NA-A4QW-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Sarcoma_SARC_TCGA-IW-A3M6-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.442578
hydrocephalus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.383708
GSE160817_7_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
abnormal kidney morphology	IMPC Knockout Mouse Phenotypes	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044122
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
male infertility	MGI Mouse Phenotype Associations 2023	1.0	null
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8011
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166768
ONCODG1	CCLE Cell Line Gene CNV Profiles	1.0	1.46155
preweaning lethality, incomplete penetrance	MGI Mouse Phenotype Associations 2023	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8265-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
enlarged spleen	MGI Mouse Phenotype Associations 2023	1.0	null
NB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60942
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0161
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.5339
POU2F2	ENCODE Transcription Factor Targets	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43454
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0471
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A3HD-01B-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-60-2716-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2116
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.221989
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4656
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45392
PMC7895828-41419_2021_3488_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_3_List_of_deregulated_genes_in_c-MYC_altered_human_HCC_from_TCGA_LIHC_dataset_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.85681
Brain Lower Grade Glioma_LGG_TCGA-S9-A7IS-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-630	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
hsa-miR-4445	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5755
hsa-miR-767-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BX-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
normal pressure hydrocephalus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.916375
NCIH209	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36259
iga glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283297
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6962-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-4293	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6813
GSE118816_0_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	-1.0	null
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1557
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
SPI1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-2Y-A9GV-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90334
KLE	CCLE Cell Line Gene CNV Profiles	1.0	1.40794
GSE154197_1_v_2_ints13_human	RummaGEO Gene Perturbation Signatures	1.0	null
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4782
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.174087
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
type iii polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.52992
POU2F2	JASPAR Predicted Transcription Factor Targets	1.0	null
filariasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.539667
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.22145
viral capsid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.198325
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.26145
abnormal spermatogonia proliferation	MGI Mouse Phenotype Associations 2023	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5484
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
Sarcoma_SARC_TCGA-QQ-A8VB-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glomerulonephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075007
MOTN1	CCLE Cell Line Gene CNV Profiles	1.0	2.2711
Liver hepatocellular carcinoma_LIHC_TCGA-MI-A75G-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32992
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
small heart	IMPC Knockout Mouse Phenotypes	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049519
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1409
OCUM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51653
abnormal jejunum morphology	IMPC Knockout Mouse Phenotypes	1.0	null
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.3067
TCF3	ENCODE Transcription Factor Targets	1.0	null
NIHOVCAR3	CCLE Cell Line Gene CNV Profiles	1.0	1.93249
IMR-32	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09332
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.01282
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6815
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25Z-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.601283
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00734
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042343
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7584
HSC2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.24291
EBF1	ENCODE Transcription Factor Targets	1.0	null
OUMS23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62639
CEBPB	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-3679-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
Endomysium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.76
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20008
posterior silk gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21535
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.232
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.908298
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40951
COV318	CCLE Cell Line Gene CNV Profiles	1.0	1.39159
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4636
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041387
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910379
Brain Lower Grade Glioma_LGG_TCGA-DU-7019-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.626677
abnormal heart morphology	IMPC Knockout Mouse Phenotypes	1.0	null
silk gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.928478
Adult astrocytic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.595
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.2683
abnormal skin morphology	MGI Mouse Phenotype Associations 2023	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7029
Acute Myeloid Leukemia_LAML_TCGA-AB-3005-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062823
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79152
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28801
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal duodenum morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90334
hematopoietic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072713
SKMEL28	CCLE Cell Line Gene CNV Profiles	1.0	1.52144
abnormal kidney morphology	MGI Mouse Phenotype Associations 2023	1.0	null
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2023	1.0	null
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.4604
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868339
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIX5	ENCODE Transcription Factor Targets	1.0	null
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9817
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
MYC-18940864-HL60-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
Bladder Urothelial Carcinoma_BLCA_TCGA-H4-A2HO-01A-11R-A180-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU685	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64843
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-6022-01A-21R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16203
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35174
enlarged heart	IMPC Knockout Mouse Phenotypes	1.0	null
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22875
COV318	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158
Rectum adenocarcinoma_READ_TCGA-G5-6572-02A-12R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
polyketide synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.580922
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AS-3777-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7250-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
501A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3637
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A43S-01A-21R-A23W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.28381
lens disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.198709
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VH-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6109
abnormal seminal vesicle morphology	IMPC Knockout Mouse Phenotypes	1.0	null
hsa-miR-198	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11259
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.707221
Lung squamous cell carcinoma_LUSC_TCGA-43-A56U-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1842
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.058863
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3781
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5946
dentin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.264011
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20008
HEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86641
SNU1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42499
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.583163
hsa-miR-514b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Lung squamous cell carcinoma_LUSC_TCGA-56-6546-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.21868
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3992
PMC10800016-table_s3_20230913_ddad186.xlsx-DUX4-aff_II-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal pancreas morphology	IMPC Knockout Mouse Phenotypes	1.0	null
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16259
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7074
SIX5_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2616
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6411
NCIH1385	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37346
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32632
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.36558
KIAA1143	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43794
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
KYSE270	CCLE Cell Line Gene CNV Profiles	1.0	1.69132
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053761
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
EBF1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A11A-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78941
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A410-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05288
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96562
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VC-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal cecum morphology	MGI Mouse Phenotype Associations 2023	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3221
PAX5	ENCODE Transcription Factor Targets	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2919
oocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.560847
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16358
Lung adenocarcinoma_LUAD_TCGA-44-A479-01A-31R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RW-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62108
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8682
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal tail morphology	MGI Mouse Phenotype Associations 2023	1.0	null
parasitic helminthiasis infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.183248
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A5W6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.236
OVCAR4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55294
Dermal microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.775
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.93032
BL7338 (LRWD1)	NURSA Protein Complexes	1.0	null
GSE221327_6_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8675
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4412
PMC12179083-Table_6.xlsx-VCF_Variants_Master_File-Gene_symbol_TBX1	Rummagene Transcription Factor Associations 2026	1.0	null
male infertility	IMPC Knockout Mouse Phenotypes	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4464
tetanus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.241196
Facioscapulohumeral muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.25877
GSE226584,GSE226589_3_v_0_ezh2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.74607
porphyria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.431894
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99144
abnormal eye morphology	MGI Mouse Phenotype Associations 2023	1.0	null
erythroid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.218613
abnormal spleen morphology	IMPC Knockout Mouse Phenotypes	1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1945
NMCG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.28755
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25119
KNS60	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83931
GSE116930,GSE116935_3_v_0_hes7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1736
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35252
DRM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.777
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZBTB33_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE158834_12_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.0537
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
C3A	CCLE Cell Line Gene CNV Profiles	1.0	1.79742
abnormal urinary bladder morphology	IMPC Knockout Mouse Phenotypes	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-77-7142-01A-11R-2045-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SCLC-22H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
abnormal urinary bladder morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Retinitis pigmentosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.455
ZBTB33_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.844126
lymphoid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.20696
GSE178714_5_v_2_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A3MB-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rectum adenocarcinoma_READ_TCGA-EI-6509-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.894449
Lung adenocarcinoma_LUAD_TCGA-J2-8194-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-MI-A75I-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE226584,GSE226589_2_v_0_ezh2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
proteasomal protein catabolic process	GO Biological Process Annotations 2025	1.0	null
Sarcoma_SARC_TCGA-SI-A71Q-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4385
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98649
GSE228106_3_v_2_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68808
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.849165
HH	CCLE Cell Line Gene CNV Profiles	1.0	1.42714
Prostate adenocarcinoma_PRAD_TCGA-HC-A4ZV-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SIX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
preweaning lethality, incomplete penetrance	IMPC Knockout Mouse Phenotypes	1.0	null
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30211
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KP-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5
Brain Lower Grade Glioma_LGG_TCGA-DU-5872-02A-21R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3018
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3185
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_6_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
SCLC21H	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1998
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7062
PMC10800016-table_s3_20230913_ddad186.xlsx-DUX4-aff_I-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
CORL88	CCLE Cell Line Gene CNV Profiles	1.0	1.70647
enlarged heart	MGI Mouse Phenotype Associations 2023	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-4613-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE221327_8_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
small kidney	MGI Mouse Phenotype Associations 2023	1.0	null
SBC5	CCLE Cell Line Gene CNV Profiles	1.0	1.67061
Adrenocortical carcinoma_ACC_TCGA-OR-A5K0-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054908
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2333
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9663
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11259
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.272241
virion part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.056194
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2469
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045182
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0629
Lung squamous cell carcinoma_LUSC_TCGA-46-6026-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE48812_2_v_6_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
BE-04-AN21_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.426155
MDAMB157	CCLE Cell Line Gene CNV Profiles	1.0	1.55958
RUNX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3973
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858749
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00658
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
nephritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069779
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.61
diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.364085
Sarcoma_SARC_TCGA-MB-A8JL-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.518859
kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048122
PA-TU-8988T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
myeloblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.300679
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3N6-01A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.5278
Prostate adenocarcinoma_PRAD_TCGA-KK-A7B2-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.254069
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.053649
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.57625
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045678
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92496
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.2779
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2023	1.0	null
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4681
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.488
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5744
ZBED1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2446
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
FOSL2	ENCODE Transcription Factor Targets	1.0	null
KMS-28BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37103
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40215
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21505
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.685
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.497266
hsa-miR-1197	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Kidney renal papillary cell carcinoma_KIRP_TCGA-Y8-A8S1-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042677
MEWO	CCLE Cell Line Gene CNV Profiles	1.0	1.3498
hsa-miR-4685-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.466
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.04281
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.13414
porphyria cutanea tarda	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.634349
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05145
erythroid progenitor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.54217
abnormal duodenum morphology	IMPC Knockout Mouse Phenotypes	1.0	null
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09535
Kidney renal papillary cell carcinoma_KIRP_TCGA-AL-3466-01A-02R-1351-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
molaris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.33046
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.208579
abnormal skin morphology	IMPC Knockout Mouse Phenotypes	1.0	null
BCPAP	CCLE Cell Line Gene CNV Profiles	1.0	1.37902
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8047-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5839
joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216126
abnormal cecum morphology	IMPC Knockout Mouse Phenotypes	1.0	null
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35252
Facioscapulohumeral muscular dystrophy 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
hsa-miR-4328	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Brain Lower Grade Glioma_LGG_TCGA-HT-8564-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal stomach morphology	IMPC Knockout Mouse Phenotypes	1.0	null
PBX3	ENCODE Transcription Factor Targets	1.0	null
acute porphyria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.433021
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.363
MYC-18940864-HL60-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SNU899	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60008
OVSAHO	CCLE Cell Line Gene CNV Profiles	1.0	2.07573
Prostate adenocarcinoma_PRAD_TCGA-J4-A83L-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-38-4631-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SCLC-21H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.45215
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.296601
cerebral degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135904
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.842447
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66561
BXPC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839907
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7CH-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.847614
GSE221327_10_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.95
ZBTB33_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2191
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9429
Sarcoma_SARC_TCGA-SG-A6Z7-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
Lung adenocarcinoma_LUAD_TCGA-05-4398-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.96562
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987452
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2905
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8403
KURAMOCHI	CCLE Cell Line Gene CNV Profiles	1.0	1.36373
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.13627
blast cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.072227
KMS28BM	CCLE Cell Line Gene CNV Profiles	1.0	1.55558
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.175679
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4532
SPI1	ENCODE Transcription Factor Targets	1.0	null
abnormal testis morphology	MGI Mouse Phenotype Associations 2023	1.0	null
hsa-miR-4287	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.671
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21811
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8953
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.4452
SNUC4	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
abnormal eye morphology	IMPC Knockout Mouse Phenotypes	1.0	null
SUPT11	CCLE Cell Line Gene CNV Profiles	1.0	1.64742
hsa-miR-4469	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
proteasome-mediated ubiquitin-dependent protein catabolic process	GO Biological Process Annotations 2025	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.29125
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04441
proteasomal protein catabolic process	GO Biological Process Annotations 2023	1.0	null
small heart	MGI Mouse Phenotype Associations 2023	1.0	null
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046232
hsa-miR-3140-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3948
EP300	ENCODE Transcription Factor Targets	1.0	null
LN319	CCLE Cell Line Gene CNV Profiles	1.0	1.9256
cullin-RING ubiquitin ligase complex	GO Cellular Component Annotations 2023	1.0	null
azoospermia	MGI Mouse Phenotype Associations 2023	1.0	null
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16126
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1277
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.002
Cul2-RING ubiquitin ligase complex	GO Cellular Component Annotations 2025	1.0	null
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2573
abnormal pancreas morphology	MGI Mouse Phenotype Associations 2023	1.0	null
small kidney	IMPC Knockout Mouse Phenotypes	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06369
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.398357
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.523
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2346
KMM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959057
hsa-miR-4762-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.110055
small testis	IMPC Knockout Mouse Phenotypes	1.0	null
communicating hydrocephalus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.844211
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4254
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.4141
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8337
NAMALWA	CCLE Cell Line Gene CNV Profiles	1.0	1.3811
RAJI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17158