association	dataset	threshold value	standardized value
FOSL2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4460	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
hsa-miR-378e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
embryonic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354455
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103702
hsa-miR-1237	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
hsa-miR-324-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05438
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08268
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042352
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
hsa-miR-378d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
MAX_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIN3A	ENCODE Transcription Factor Targets	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36345
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23864
hsa-miR-422a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.077079
H3K36me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88661
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041546
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82923
hsa-miR-3151	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.604201
hsa-miR-4262	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
laryngeal squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.760639
laryngeal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.67156
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20843
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051209
hsa-miR-4682	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
RXRA_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053956
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82659
H4K20me1_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921277
hsa-miR-3145-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15978
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85044
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060365
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974666
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-13q34_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
NFKB1	JASPAR Predicted Transcription Factor Targets	1.0	null
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50183
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853567
C-33 A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877537
hsa-miR-4505	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
RXRA	ENCODE Transcription Factor Targets	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041239
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
hsa-miR-3180-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
RFX5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90468
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2384
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
LK2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09287
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.879402
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
atrophic muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.865502
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
hsa-miR-524-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	2.59775
NCIH522	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41271
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02907
SNUC1	CCLE Cell Line Gene CNV Profiles	1.0	1.59567
hsa-miR-181d	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
RERFLCMS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90383
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932018
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	1.75387
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044978
hsa-miR-4459	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-4742-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56284
GABPA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05697
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05143
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7863
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052022
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848764
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.12834
YD38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59045
RXRA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
USF1	ENCODE Transcription Factor Targets	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24628
lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371619
BICR18	CCLE Cell Line Gene CNV Profiles	1.0	1.38366
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.65527
GTF2B	ENCODE Transcription Factor Targets	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041865
hsa-miR-378c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76157
ELK1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.63993
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23092
TAF1_GM12892_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TAF1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.074591
JUND_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057142
QGP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.39283
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.408
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921898
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070304
hsa-miR-4658	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38688
hsa-miR-1245	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606152
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38944
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25859
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-13q34_1_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68536
hsa-miR-4321	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
SW948	CCLE Cell Line Gene CNV Profiles	1.0	2.10625
TAF1	ENCODE Transcription Factor Targets	1.0	null
NCIH1623	CCLE Cell Line Gene CNV Profiles	-1.0	-2.79068
hsa-miR-140-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.220673
RAD21_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27ac_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC7818749-12931_2021_1617_MOESM1_ESM.xlsx-TBX4-SYMBOL_TBX4	Rummagene Transcription Factor Associations 2026	1.0	null
LS513	CCLE Cell Line Gene CNV Profiles	1.0	1.42938
hsa-miR-1292	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
RELA	JASPAR Predicted Transcription Factor Targets	1.0	null
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
SNU620	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69598
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040937
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50033
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.865502
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057244
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_30_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
NR3C1_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCIH2066	CCLE Cell Line Gene CNV Profiles	1.0	1.63118
Nemaline myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.169
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.053215
HN	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.9357
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.65108
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
x chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.987806
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406425
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399871
PMC6299095-41389_2018_108_MOESM4_ESM.xlsx-T47D-TRPS1_peak-gene_symbol_TRPS1	Rummagene Transcription Factor Associations 2026	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1Q6-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.45176
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32927
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09255
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064887
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4495	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.757378
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.19574
hsa-miR-378f	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
SP1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CL-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24054
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11243
NCIH2291	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36152
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055384
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921277
FOXI1	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.4065
HCC33	CCLE Cell Line Gene CNV Profiles	1.0	1.96327
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2384
Lung adenocarcinoma_LUAD_TCGA-44-8119-01A-11R-2241-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-494	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GTF2B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW403	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06731
X-linked reticulate pigmentary disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.757
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042068
POU2F2	ENCODE Transcription Factor Targets	1.0	null
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81038
osteonecrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.721673
hsa-miR-378b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
POU2F2_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
TCF12	ENCODE Transcription Factor Targets	1.0	null
CTCF_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.090753
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053917
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052264
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02577
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877855
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134047
ischemic bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.67113
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
SIN3A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ELK1	ENCODE Transcription Factor Targets	1.0	null
KMBC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78228
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914336
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390044
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53293
hsa-miR-1299	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
H3K4me1_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44263
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932018
Developmental and epileptic encephalopathy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.234
hsa-miR-1231	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24628
NCIH508	CCLE Cell Line Gene CNV Profiles	1.0	2.18854
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05151
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17584
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.452584
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09362
OUMS23	CCLE Cell Line Gene CNV Profiles	1.0	1.54429
TCF3	ENCODE Transcription Factor Targets	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82659
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44304
hsa-miR-4796-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36286
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47186
hsa-miR-885-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070787
hsa-miR-378h	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053002
PMC9950457-mmc3.xlsx-GRHL2_binding_sites-RBBP8NL_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_Panc1_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
PBX3	ENCODE Transcription Factor Targets	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4167
SP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
hsa-miR-369-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-3672	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Partington syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.884
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.91052
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163938
H3K36me3_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057661
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4167
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SP1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74318
TAF1_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052947
COLO205	CCLE Cell Line Gene CNV Profiles	1.0	2.11395
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590839
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46992
MESSA	CCLE Cell Line Gene CNV Profiles	1.0	1.33458
H3K4me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCT-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2995
cone-rod dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35123
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42833
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04152
hsa-miR-3163	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
REST	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-181a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-4471	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4714-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Retinitis pigmentosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46164
COLO800	CCLE Cell Line Gene CNV Profiles	1.0	1.49116
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234302
hsa-miR-3157-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
HDQP1	CCLE Cell Line Gene CNV Profiles	1.0	1.56897
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H4K20me1_fibroblast of lung_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877279
hsa-miR-181b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054023
HPAF-II	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28743
SP1	ENCODE Transcription Factor Targets	1.0	null
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051467
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20306
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.87743
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36732
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14611
hsa-miR-4647	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
SIN3A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11876
H3K4me2_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SRSF3_02_127	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	4.56478
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974666
P31FUJ	CCLE Cell Line Gene CNV Profiles	1.0	1.57189
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01322
HEP3B217	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58217
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03229
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
Color blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.12
hsa-miR-4533	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
RAD21	ENCODE Transcription Factor Targets	1.0	null
laryngeal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622183
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26125
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.605372
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38988
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.125
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59435
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986635
TE1	CCLE Cell Line Gene CNV Profiles	1.0	1.90421
hsa-miR-181c	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
hsa-miR-520d-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0083
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054242
PAX5	ENCODE Transcription Factor Targets	1.0	null
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44263
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
hsa-miR-137	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
GABPA	ENCODE Transcription Factor Targets	1.0	null
HPAFII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54175
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.793543
hsa-miR-4673	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90388
TCF12_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06889
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09319
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051713
hsa-miR-4724-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11243
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904777
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051872
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45617
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39723
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
H3K4me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053637
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921898
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05536
MAX_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NR3C1	ENCODE Transcription Factor Targets	1.0	null
RFX5	ENCODE Transcription Factor Targets	1.0	null
JUND	ENCODE Transcription Factor Targets	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054022
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.752716
GABPA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49311
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.70372
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69494
PMC7818749-12931_2021_1617_MOESM1_ESM.xlsx-TBX4-ENSEMBL_TBX4	Rummagene Transcription Factor Associations 2026	1.0	null
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848764
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
FOSL2	ENCODE Transcription Factor Targets	1.0	null
NCIH1734	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40227
hsa-miR-4426	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17487
TAF1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31518
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-2.67546
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996256
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997716
RERF-LC-MS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03328
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26125
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904777
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
larynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.588222
hsa-miR-4645-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
hsa-miR-378	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.96682
hsa-miR-378i	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
CTCF	ENCODE Transcription Factor Targets	1.0	null
ELK1	JASPAR Predicted Transcription Factor Targets	1.0	null
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055402
TE10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40332
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28697
ZBTB33_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW1463	CCLE Cell Line Gene CNV Profiles	1.0	1.58615
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606933
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.598469
H3K27me3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CALU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69381