association	dataset	threshold value	standardized value
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.8033
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134047
RBFOX1	Pathway Commons Protein-Protein Interactions	1.0	null
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0369
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37185
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.00044
SNU61	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59435
NCIH2066	CCLE Cell Line Gene CNV Profiles	1.0	1.63118
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05536
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	191.839
AR-22383394-PROSTATE_CANCER-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
FOSB::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.6678
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	97.4304
CTCF	ENCODE Transcription Factor Targets	1.0	null
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5
JUND_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 1417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974666
GSE125219,GSE125221_4_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7501
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848764
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8078
Mosaic loss of chromosome Y (Y chromosome dosage)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.809691
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06731
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.65527
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.5181
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	291.652
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.694
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2384
SP5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	171.742
atrophic muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.865502
hsa-miR-4471	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
CPC-N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932018
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.9075
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3167
H3K9me3_osteoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE130396_7_v_6_braf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.5396
hsa-miR-378b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.7053
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.6884
ETV4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3925
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.074591
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8339
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23092
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.7487
NCI-H1623	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.00044
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09255
496100532_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.78697
NCIH1734	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40227
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF582	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.2799
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.7664
YY2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9521
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2716
ETV3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5998
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69494
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.231
COLO800	CCLE Cell Line Gene CNV Profiles	1.0	1.49116
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.8815
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6993
PMC8046804-41467_2021_22478_MOESM11_ESM.xlsx-Del_AA-TCGA-Unnamed_30_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3391
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.3051
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.3993
HN	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
EP300	ENCODE Transcription Factor Targets	1.0	null
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90388
GSE216043_7_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
RELA	JASPAR Predicted Transcription Factor Targets	1.0	null
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	265.495
ETS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.2273
SW403	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
OUMS-23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.12834
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4167
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.090753
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	113.476
BCL6B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.998
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	145.182
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.3337
ZBTB14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.7865
SNU-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9867
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	1.75387
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.5675
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.4274
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.0248
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.4384
EP300_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WSU-FSCCL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17584
GSE135030_11_v_5_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	119.586
hsa-miR-4682	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
doxorubicin_homo sapiens_gpl570_gse46493	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36732
PBX3	ENCODE Transcription Factor Targets	1.0	null
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.996256
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0005
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921277
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921898
ERF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4555
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.8395
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2998
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0675
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24628
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.997716
b21	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.845
NHLH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.8034
hsa-miR-3145-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9216
KLF17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	232.052
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.739
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.6983
NCIH1623	CCLE Cell Line Gene CNV Profiles	-1.0	-2.79068
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4694
SP1_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.5208
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.504
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03229
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.2079
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.122
hsa-miR-378e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.3859
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.7391
hsa-miR-378c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5811
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04152
PMC6347838-13046_2019_1042_MOESM3_ESM.xls-PRDM16_group_peak_anno-Gene_PRDM16	Rummagene Transcription Factor Associations 2026	1.0	null
GSE223893_1_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CTCF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	366.13
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	282.354
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7806
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09319
hsa-miR-4426	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2609
EGR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.7162
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060365
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20306
Small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
NCI-H1650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.1049
hsa-miR-140-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.8452
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.2281
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9965
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.879402
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.791
hsa-miR-4658	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
SNU-719	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877279
FOSL2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REST	ENCODE Transcription Factor Targets	1.0	null
GLIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1926
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.31518
JD-44-KF86_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.0561
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38988
muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606152
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39723
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9628
GSE239784_1_v_0_sat1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PAX5_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMAD5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.3238
TCF3_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.222
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26125
CALU-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44263
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	265.903
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.752716
ELK4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.721
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85044
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45617
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3968
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0739
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
ZNF768	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.653
496100346_FWM_no dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.13984
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.6692
KMBC2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78228
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.375
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0057
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5746
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057244
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	99.8229
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053917
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6072
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6445
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	128.58
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.2871
GSE216043_11_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
GSE135030_3_v_10_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.9432
squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.793543
GSE264621_1_v_3_secretin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE206729_4_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PITX1	Pathway Commons Protein-Protein Interactions	1.0	null
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15978
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6041
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3624
hsa-miR-3180-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
SIN3A	ENCODE Transcription Factor Targets	1.0	null
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2196
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44304
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9117
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.921
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56284
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5106
RAD21	ENCODE Transcription Factor Targets	1.0	null
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.093
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.591
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051872
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	300.041
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68536
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4111
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.8795
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.19574
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8956
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2725
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.6434
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6404
HK-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.9044
GABPA	ENCODE Transcription Factor Targets	1.0	null
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.212
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.6077
JUND	JASPAR Predicted Transcription Factor Targets	1.0	null
Lateral element	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.877
HPAF-II	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28743
STAT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.5756
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2136
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.7887
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8934
HOXC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8306
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0333
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.163938
hsa-miR-4533	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
KLF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	114.008
KP4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53293
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
Laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.284
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054022
hsa-miR-4495	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
NCIH1105	CCLE Cell Line Gene CNV Profiles	1.0	1.65108
GSE208350_4_v_1_fgfr1_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.187
SPDEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2793
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.0059
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4755
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.6283
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052264
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	334.312
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.6843
GSE93124_0_v_1_crizotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H1734	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25859
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.0869
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4827
RERF-LC-MS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03328
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054023
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88661
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.184
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.4355
hsa-miR-137	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
E2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.8524
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	128.6
ZBED1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.69
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3432
RXRA	ENCODE Transcription Factor Targets	1.0	null
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	117.479
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35123
hsa-miR-494	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.5105
RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	142.497
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6218
ZSCAN29	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1701
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.4185
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05438
hsa-miR-524-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
OUMS23	CCLE Cell Line Gene CNV Profiles	1.0	1.54429
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	141.255
GABPA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF354C	JASPAR Predicted Transcription Factor Targets	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053637
hsa-miR-378	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.4013
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.7708
GSE138938_1_v_3_foxp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1844
KLF13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	155.15
TE10	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40332
ZBTB7B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6602
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.9146
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.204
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82923
ZNF213	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	168.959
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3571
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.0558
hsa-miR-4460	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GSE240386,GSE242143_8_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.661
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7303
FOXA1	ENCODE Transcription Factor Targets	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041865
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.2181
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8851
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	134.451
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36286
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.2344
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4066
Gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.26125
HCT-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2995
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-324-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.220673
ZBTB7C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	103.82
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9494
TE-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.14626
hsa-miR-4724-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
ETS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7778
ZNF460	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	668.572
Laryngeal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.406
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.8942
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.5852
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14611
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	124.83
GSE142210_11_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.7944
SW1463	CCLE Cell Line Gene CNV Profiles	1.0	1.58615
x chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.987806
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02907
SW948	CCLE Cell Line Gene CNV Profiles	1.0	2.10625
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.5024
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42833
AD-51-SS86_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.290034
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	115.98
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.4253
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.6727
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.943
GLI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.7102
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8408
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877855
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.3478
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4781
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399871
Systolic blood pressure	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.969897
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.81038
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49311
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.1118
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.4065
hsa-miR-1292	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
PAX5	ENCODE Transcription Factor Targets	1.0	null
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.9787
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36345
hsa-miR-181b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.33595
ZBTB11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	137.844
LK2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09287
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	151.081
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.406425
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09362
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3396
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	178.02
CUX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0718
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5556
RXRA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.3249
Plant crown	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.227
RCC 786-O cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.46
CTCF_fibroblast of foreskin _hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.091
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.5178
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9041
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.8971
ZBTB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.8837
NR3C1	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-885-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
laryngeal cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38688
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.1848
P31FUJ	CCLE Cell Line Gene CNV Profiles	1.0	1.57189
GSE164505,GSE164506_3_v_2_indisulam_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RFX7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7661
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.9205
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9019
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042068
HOXD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9297
NCIH508	CCLE Cell Line Gene CNV Profiles	1.0	2.18854
GSE216043_10_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.9133
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.2662
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904777
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055384
hsa-miR-4714-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.1412
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	126.861
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1747
ZBED4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	215.552
SIN3A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Smoking initiation	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.752288
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	125.476
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20843
Chromocenter	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.862
ZIC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.45
muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.865502
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3072
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041546
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1085
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0141
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	14.2692
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8336
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.390044
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.953
GSE206729_5_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
laryngeal squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.760639
PAX5_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1432
SW 480	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08268
HPAFII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54175
hsa-miR-1231	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
SP9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	169.132
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9714
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.3073
SP1_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-181d	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.5064
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8219
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.348
laryngeal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622183
CL-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24054
FOXA1_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Hair root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.008
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.8505
ZIC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	144.948
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50183
YD38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
LS513	CCLE Cell Line Gene CNV Profiles	1.0	1.42938
SP1	ENCODE Transcription Factor Targets	1.0	null
OVOL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.981
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	204.133
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.7171
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	232.791
ETV5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3445
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.5295
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4679
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.7748
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-2.67546
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	124.182
496100402_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.32628
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
TAF1	ENCODE Transcription Factor Targets	1.0	null
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.621
HCC33	CCLE Cell Line Gene CNV Profiles	1.0	1.96327
TAF1_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.9632
HCC1263	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46164
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06889
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051209
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070304
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053956
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041239
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0083
hsa-miR-4647	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.6512
Renal cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.958
GSE160817_7_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7348
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0631
Left ventricular end-systolic volume (MTAG)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6765
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.1546
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.3076
hsa-miR-378h	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	651.455
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.6954
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.4796
LU-134-A	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.00044
MYBL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6158
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.1438
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4413
Cerebrospinal fluid t-tau:AB1-42 ratio	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.752288
GLIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	120.721
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.7208
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8589
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.452584
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8341
ZNF417	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.6336
NFKB1	JASPAR Predicted Transcription Factor Targets	1.0	null
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.1297
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5747
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23864
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6912
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.605372
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.9538
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051467
SIN3A_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82659
GSE138938_1_v_4_foxp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
FE-58-ES32_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.557193
RI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986635
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.032
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.7834
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054242
ELF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3011
POU2F2_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POU2F2	ENCODE Transcription Factor Targets	1.0	null
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.634
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6458
ZIC5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	114.283
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.5631
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.6048
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hsa-miR-1237	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
E2F8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.338
CEBPE	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.0945
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.4736
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.848
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.088
JUND	ENCODE Transcription Factor Targets	1.0	null
FOXL1	JASPAR Predicted Transcription Factor Targets	1.0	null
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	162.428
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.9943
Renal proximal tubule epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051713
hsa-miR-4645-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057661
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.8367
BICR18	CCLE Cell Line Gene CNV Profiles	1.0	1.38366
TAF1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.4103
laryngeal squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.67156
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	161.774
GSE206984_1_v_0_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PBX3_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE135030_11_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.45176
TFCP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.8255
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50033
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.4727
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.984
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-369-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4502
GSE130401_4_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.6923
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	119.416
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.9016
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7863
hsa-miR-3157-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
larynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.588222
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3745
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.604201
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1067
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044978
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE236003_2_v_3_ubr5_human	RummaGEO Gene Perturbation Signatures	1.0	null
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.7446
XY body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.05
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1574
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.6427
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4167
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.4109
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9967
GSE195663_0_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.077079
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.6319
myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.606933
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1181
a2780cis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76157
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	147.335
hsa-miR-1299	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.853567
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.74318
hsa-miR-4321	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.5416
FOXI1	JASPAR Predicted Transcription Factor Targets	1.0	null
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.159
hsa-miR-378i	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Synapsis initiation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.421
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.7613
KLF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	169.685
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38944
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053002
hsa-miR-181a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	137.73
hsa-miR-4673	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.91052
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2517
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.8887
VMRC-LCD	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11243
TCF3	ENCODE Transcription Factor Targets	1.0	null
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.1657
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.053215
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44263
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.9607
USF1	ENCODE Transcription Factor Targets	1.0	null
ELK1	JASPAR Predicted Transcription Factor Targets	1.0	null
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.6916
CEBPB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.1049
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
hsa-miR-4459	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
GSE206729_3_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.5864
hsa-miR-1245	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
GSE160817_7_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF410	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.5984
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5943
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.7391
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848764
connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05143
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.8427
HOXA9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6443
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.75
ZNF530	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.9602
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590839
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0695
BCOR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.131
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.1971
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7716
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.699
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932018
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.431
CREB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6107
hsa-miR-4796-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SNUC1	CCLE Cell Line Gene CNV Profiles	1.0	1.59567
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FEV	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7432
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3898
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	285.947
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.3997
MYBL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.9234
C-33 A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877537
FOSL2	ENCODE Transcription Factor Targets	1.0	null
XBP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.1736
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.1995
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.253
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.6921
GABPA_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3354
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.1771
GSE235701,GSE261434_0_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GRHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.4425
ZBED2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7471
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.82659
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.7922
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052022
hsa-miR-3151	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
PLAGL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	197.908
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	175.935
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040937
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0683
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17487
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0378
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	165.135
496100549_FWM_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.47337
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0766
IRF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3243
TCFL5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4942
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921898
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5814
NCIH522	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41271
Stomach	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.4174
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.3643
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8708
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.96682
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.904777
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
QGP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.39283
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7546
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.3593
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	191.99
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	102.315
TCF21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8982
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	146.888
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.2956
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.959674
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057142
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	109.263
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	297.141
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.612
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1511
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052947
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24628
Cardia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
NCI-H920	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02577
FAR/SIN/STRIPAK complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.684
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.914336
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4124
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	93.8938
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0039
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	247.384
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.633
hsa-miR-4262	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE216043_3_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.4792
RERFLCMS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90383
NCIH2291	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36152
ERF::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4732
GSE160817_7_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	113.845
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47186
Transverse filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.125
RXRA_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.4919
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0341
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4093
SNU620	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69598
PL-21	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46992
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	168.934
neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.757378
bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055402
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.57773
ZNF418	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2901
GSE125219,GSE125221_5_v_0_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MESSA	CCLE Cell Line Gene CNV Profiles	1.0	1.33458
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2072
GABPA_HeLa-S3_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.8616
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0416
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.1458
lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.371619
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.9066
GSE236003_1_v_3_ubr5_human	RummaGEO Gene Perturbation Signatures	1.0	null
COLO668	CCLE Cell Line Gene CNV Profiles	1.0	1.87743
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.9357
ischemic bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.67113
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01866
OVOL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.4376
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	131.092
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.2727
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.598469
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	278.332
NCI-H508	COSMIC Cell Line Gene CNV Profiles	1.0	2.14626
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4149
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2384
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1587
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.7942
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	128.445
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.7908
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	160.282
Left ventricular end-diastolic volume (MTAG)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.8
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	275.357
ZNF610	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.38
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234302
Left ventricular mass (MTAG)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.509691
ETV2::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3663
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59045
hsa-miR-3672	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
AR	ChEA Transcription Factor Targets	1.0	null
ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0192
EGR3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.962
hsa-miR-378d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
CALU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69381
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7697
COLO205	CCLE Cell Line Gene CNV Profiles	1.0	2.11395
TE1	CCLE Cell Line Gene CNV Profiles	1.0	1.90421
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	264.199
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05697
DB-18-UF01_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.291304
GSE135030_8_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE142210_3_v_8_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-181c	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
HCC1395	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.00044
HEP3B217	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58217
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974666
embryonic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354455
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921277
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	85.156
hsa-miR-422a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
RELB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4438
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.8513
squamous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.103702
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5168
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.4532
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	232.742
Squamous cell carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.927
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32927
facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.63993
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	135.844
HOXA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7984
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4836
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.4815
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.11876
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	92.3745
496100464_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.07938
GSE195663_0_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7593
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	144.632
496100413_FWM_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.03075
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7625
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.19097
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	203.286
GSE125219,GSE125221_3_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
KO52	CCLE Cell Line Gene CNV Profiles	1.0	1.70372
hsa-miR-520d-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
LA-42-ER00_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.28216
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8879
hsa-miR-4505	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	127.168
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0746
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2426
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.816
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.0
TA-25-ZO44_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.210663
HN	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.00044
REST_Panc1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-4742-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0095
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2955
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11243
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8922
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8055
Total cholesterol levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.809691
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.3134
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.6704
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.7752
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.6568
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5129
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1561
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1042
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	184.283
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2228
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9123
ZNF669	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.365
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.2506
RXRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0826
COLO201	CCLE Cell Line Gene CNV Profiles	1.0	2.59775
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9079
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
chromosome, subtelomeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.816
SMAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7835
RUNX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1842
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2108
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.90468
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042352
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05151
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.8322
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070787
GSE135030_3_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5373
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28697
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8498
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9623
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.848215
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2647
ZNF770	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	214.367
lymphoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064887
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.5914
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.2979
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7829
Response to bronchodilator in chronic obstructive pulmonary disease (change in FEV1)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.630103
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.995
A4/FUK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01322
hsa-miR-378f	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.5067
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4823
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9785
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.875
HDQP1	CCLE Cell Line Gene CNV Profiles	1.0	1.56897
NR3C1_A549_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE130396_7_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.8211
PANC 03.27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883968
osteonecrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.721673
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.1484
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.288
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.4472
SP1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.9309
Meiotic cohesin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.077
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.5996
hsa-miR-3163	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
TAF1_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.293
GSE216043_10_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.4136
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3331
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.6361
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836235
DMRTA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8749