association	dataset	threshold value	standardized value
496100643_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.02562
ZNF418	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4853
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2344
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2295
BICR16	CCLE Cell Line Gene CNV Profiles	1.0	2.3314
Hyperopia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.438
OVCAR5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60042
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.82443
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6141
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7057
COV644	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.15775
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.4538
Kidney - Cortex	GTEx Tissue Gene Expression Profiles 2023	1.0	5.77193
NCI-H1694	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.907437
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45751
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08165
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05457
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26826
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
laminin-2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.383
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.3592
496100494_HIP_no dementia_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.03021
496100477_HIP_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.49668
Schizophrenia	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.35229
CTV1DM	DepMap CRISPR Gene Dependency	1.0	2.47368
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.546
RCCFG2	DepMap CRISPR Gene Dependency	1.0	2.07025
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09184
VMRCRCW	CCLE Cell Line Gene CNV Profiles	-1.0	-2.16266
496100461_PCx_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.5849
bladder	GTEx Tissue Gene Expression Profiles	1.0	0.88774
LNZTA3WT4	DepMap CRISPR Gene Dependency	1.0	6.28513
GSE205070_2_v_7_mertk_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE218580_1_v_4_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13064
GSE96777,GSE96778_1_v_0_zbtb4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Lymphosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
496100388_HIP_probable Alzheimer's disease_no TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.14073
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.3121
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3534
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3586
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.2834
AML193	DepMap CRISPR Gene Dependency	1.0	2.28519
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8428
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6029
GSE145639_1_v_2_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Leber congenital amaurosis 12	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.671
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3952
Intercalated disc	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.165
Spherical equivalent or myopia (age of diagnosis)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.969897
GSE196117_1_v_0_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.748
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8485
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5057
NCI-H1355	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.827557
Eye-retinal bipolar neuron	Tabula Sapiens Gene-Cell Associations	1.0	0.975396
Pyloric cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.869
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838755
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58013
CAOV4	DepMap CRISPR Gene Dependency	1.0	2.60869
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.5537
G84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00844
NCI-H1975	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09184
TE-6	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-MEF2C_MEF2C	Rummagene Transcription Factor Associations 2026	1.0	null
Zona reticulata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.279
Perturb_15776_OE_Nmnat2_SRP360949	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.35544
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8734
SNU1272	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39843
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3129
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10357
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
ZBED1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9083
OSC-19	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
GSE73561,GSE73563_0_v_1_mef2c_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE167004_0_v_3_thpo_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7792
SNU503	CCLE Cell Line Gene CNV Profiles	1.0	1.33634
GSE58498,GSE58501_2_v_3_dgcr8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08165
adrenal gland	GTEx Tissue Gene Expression Profiles	-1.0	-0.865978
HEL9217	DepMap CRISPR Gene Dependency	1.0	2.21628
NDUFA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01001
GSE138633_2_v_0_bag3_human	RummaGEO Gene Perturbation Signatures	1.0	null
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49511
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.988702
RORA_1	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26663
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2319
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05457
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.73
GSE208254_4_v_5_irf8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921005
GSE145476_2_v_0_hopx_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52123
GSE152432_9_v_4_zrsr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH3255	CCLE Cell Line Gene CNV Profiles	1.0	1.7298
GSE184902_3_v_1_adipor1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE88819_11_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09157
GSE101767_1_v_0_wdr11_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4581
LB771HNC	DepMap CRISPR Gene Dependency	1.0	5.44282
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9131
EM2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4603
NMCG1	DepMap CRISPR Gene Dependency	1.0	4.38514
GSE88819_3_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE218580_1_v_3_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Creb3l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.891
22RV1	DepMap CRISPR Gene Dependency	1.0	5.05276
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21364
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.0866
GSE88819_3_v_12_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC2935	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2221
ZBTB17	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1879
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
Interphotoreceptor matrix	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.787
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877471
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26663
WRAP73	Pathway Commons Protein-Protein Interactions	1.0	null
IRF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0916
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6874
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.3747
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54107
Perturb_15775_OE_Nmnat1_SRP360949	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-5.6513
Familial atrial fibrillation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.165
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.7401
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58013
SOX10	MotifMap Predicted Transcription Factor Targets	1.0	null
RPE1SS6	DepMap CRISPR Gene Dependency	1.0	3.06504
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26663
SKNDZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38984
SNU489	CCLE Cell Line Gene CNV Profiles	-1.0	-2.37646
Body mass index	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.839794
MOGGUVW	DepMap CRISPR Gene Dependency	1.0	2.27081
PMC12518476-10067_2025_7574_MOESM9_ESM.xlsx-Sheet2-RNAseq_DEGs_of_KD_AR	Rummagene Transcription Factor Associations 2026	1.0	null
LS411N	DepMap CRISPR Gene Dependency	1.0	3.21682
SNUC5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36424
496100330_PCx_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.27904
t55-gastrocnemius_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	2.47406
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.8148
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4855
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22341
GSE152432_3_v_2_zrsr2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BFTC905	CCLE Cell Line Gene CNV Profiles	1.0	1.4091
Perturb_15032_KO_Hdac7_SRP314363	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.40389
Photoreceptor inner segment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.457
496100369_PCx_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08532
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5028
Perturb_6233_KO_Ugt8_SRP073495	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.71445
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5259
GSE184902_3_v_1_adiponectin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
KU812	DepMap CRISPR Gene Dependency	1.0	4.56846
NCI-H2347	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846181
PPARD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1762
Retinal detachment	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.91497
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3426
Perturb_7708_KD_Spt6_SRP132004	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-5.48358
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17695
SET2	DepMap CRISPR Gene Dependency	1.0	2.354
GSE152734,GSE152735_2_v_0_pbrm1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.71
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48282
MUTZ8	DepMap CRISPR Gene Dependency	1.0	2.22677
Hypertensive retinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.085
Perturb_15771_KO_Nrl_SRP219918	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.39322
LB1047RCC	DepMap CRISPR Gene Dependency	1.0	2.41663
Retinal rod	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
T3M10	CCLE Cell Line Gene CNV Profiles	1.0	2.84595
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.5859
COR-L26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32065
liver	GTEx Tissue Gene Expression Profiles	1.0	0.925235
KMRC3	DepMap CRISPR Gene Dependency	1.0	2.0502
GSE138001_2_v_3_rorb_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Inner nuclear layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.221
TE-10	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
Choroid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.119
TKKK	DepMap CRISPR Gene Dependency	1.0	3.37133
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.7258
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917634
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2894
NCIH2126	DepMap CRISPR Gene Dependency	1.0	2.34932
GSE157960_2_v_3_progesterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Perturb_15786_KO_Tbr1_SRP128068	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	8.29548
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.431
GSE137914_0_v_1_tet3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE205070_2_v_9_mertk_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO 205	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
SKRC20	DepMap CRISPR Gene Dependency	1.0	2.74077
PMC9385264-NIHMS1828071-supplement-8.xlsx-ESR1-gene_symbol_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3681
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6763
PLIN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57754
TE10	CCLE Cell Line Gene CNV Profiles	1.0	2.01327
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9017
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-0.865978
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.957777
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5241
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838755
Amblyopia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
SCH	DepMap CRISPR Gene Dependency	1.0	4.51277
GSE172189_0_v_1_venetoclax_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OC314	DepMap CRISPR Gene Dependency	1.0	2.47423
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8236
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5233
Perturb_15358_KO_Tfap4_SRP212619	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.5743
Perturb_3237_KD_Ikaros_SRP067339	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-15.8672
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	1.37448
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	1.75792
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0188
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2464
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877471
496100362_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.73653
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60947
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5965
496100519_HIP_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.62958
Refractive error	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.0
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2536
NCI-H2126	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25791
DMS79	CCLE Cell Line Gene CNV Profiles	1.0	1.68161
GSE136622_7_v_3_srpk3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1671
GSE220914_1_v_0_zdhhc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100377_PCx_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.83889
LN443	CCLE Cell Line Gene CNV Profiles	1.0	1.3849
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16587
Perturb_15354_OE_Hmgn1_SRP026566	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.25997
PMC6928094-395_2019_765_MOESM7_ESM.xls-DEGs_AR7_vs_Pre-patterned-List_of_differentially_expressed_genes_in_AR7_vs_Pre-patterned_cells_THRA	Rummagene Transcription Factor Associations 2026	1.0	null
SF268	CCLE Cell Line Gene CNV Profiles	1.0	1.62927
heart	GTEx Tissue Gene Expression Profiles	1.0	2.08426
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.4201
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3538
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08165
d11	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.557
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5106
VMRCRCZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40612
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
NCI-H1304	COSMIC Cell Line Gene CNV Profiles	1.0	2.64759
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48092
GSE88819_6_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16587
SKNFI	DepMap CRISPR Gene Dependency	1.0	3.38204
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.4432
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856998
GSE210885_0_v_4_klf4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4743
D502MG	DepMap CRISPR Gene Dependency	1.0	4.09562
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.8101
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1611
PMC7846764-41598_2021_81773_MOESM2_ESM.xlsx-b-Heart_AA_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856998
GSE174498,GSE174500_3_v_4_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100616_FWM_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.45919
PCI6A	DepMap CRISPR Gene Dependency	1.0	2.38796
GSE218580_1_v_2_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837354
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918114
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9407
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.964548
LS	DepMap CRISPR Gene Dependency	1.0	2.31133
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09157
IRF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0924
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09184
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47897
Perturb_5712_KO_Dgcr8_SRP043436	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-20.0
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7667
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.5556
GSE220914_2_v_0_zdhhc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54633
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6616
MS751	DepMap CRISPR Gene Dependency	1.0	2.02841
NCIH1437	CCLE Cell Line Gene CNV Profiles	1.0	1.70654
496100520_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.26111
GSE88819_3_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.741
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36989
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.2901
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.568
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09157
MM160113	DepMap CRISPR Gene Dependency	1.0	4.17674
888	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71619
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.99236
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0481
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68153
SUDHL5	DepMap CRISPR Gene Dependency	1.0	11.9172
HCT15	DepMap CRISPR Gene Dependency	1.0	2.99837
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.984212
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5739
496100350_FWM_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.70395
PMC4269325-NIHMS634665-supplement-supp_table4.xls-H3K27me3_TRIM37_KD-Unnamed_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH1694	CCLE Cell Line Gene CNV Profiles	1.0	2.38939
GSE125862_2_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perturb_5710_KO_Dgcr8_SRP043436	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-11.3334
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.9565
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.952979
GSE88819_7_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE181517_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HOP-92	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58583
IRF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.0272
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.4306
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918114
GSE246195,GSE246305_1_v_3_sin3a_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.9882
PMC12709797-12879_2025_11916_MOESM1_ESM.pdf-21-JUN_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.1804
KMRC1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36549
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.33184
Atrial appendage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.248
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9665
NCIH1299	CCLE Cell Line Gene CNV Profiles	1.0	1.349
SKMEL1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
GSE88819_5_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Ileus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.218
Perturb_5714_KO_Dgcr8_SRP043436	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-6.94644
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0875
496100574_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.06683
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09157
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.077
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.75
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26826
RORA_2	MotifMap Predicted Transcription Factor Targets	1.0	null
ETV2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1491
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21364
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5461
BT-483	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40179
GA-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22341
Myopia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.419
COLO 206F	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17099
GSE195559_0_v_5_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08165
E2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5375
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1481
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.244
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3009
496100371_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.46829
VENTX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4719
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.9988
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.906426
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.01835
Perturb_15829_OE_Nrf2_SRP291727	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-7.90821
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29633
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.307
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889058
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.301
SNU213	DepMap CRISPR Gene Dependency	1.0	2.762
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916996
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.1882
Perturb_3236_KD_Ikaros_SRP067339	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-4.77572
L-363	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68204
PECAPJ34CLONEC12	CCLE Cell Line Gene CNV Profiles	1.0	1.44692
Right colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
MFE296	DepMap CRISPR Gene Dependency	1.0	4.61736
GSE196117_6_v_8_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
PARP	MotifMap Predicted Transcription Factor Targets	1.0	null
496100404_PCx_possible Alzheimer's disease_TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.63944
Perturb_17364_Mut|OE_Sik3E13_SRP334442	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	8.04673
CL11	DepMap CRISPR Gene Dependency	1.0	2.37138
NCIH1355	DepMap CRISPR Gene Dependency	1.0	5.49315
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5045
Refractive error	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.297
GSE110303,GSE110304_1_v_0_estradiol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Sclera	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.955
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.41035
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983108
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.306
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.518
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.9788
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.259
Synaptic ribbon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.797
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13446
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877471
GSE205070_2_v_5_mertk_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6806
GSE186440,GSE186443_0_v_5_daxx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Sperm flagellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.083
Autism spectrum disorder or schizophrenia	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.822185
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.4103
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5833
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	53.4771
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-0.865978
GSE179002_2_v_6_caprin1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.439
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1013
TUHR4TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51507
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0481
NCIH1581	CCLE Cell Line Gene CNV Profiles	1.0	1.78325
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68258
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08165
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13446
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918114
NCIN87	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62183
GSE94011_2_v_1_pias3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100557_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.8937
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00684
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Eye-retinal pigment epithelial cell	Tabula Sapiens Gene-Cell Associations	1.0	0.830404
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2275
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51162
NCI-H209	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05457
COV644	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93827
ABC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.955183
Brain - Substantia nigra	GTEx Tissue Gene Expression Profiles 2023	1.0	4.21266
Perturb_5703_OE_H2Aa/H2Ab1_ERP108769	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	11.6196
PMC11282827-40659_2024_524_MOESM5_ESM.xlsx-TAL1-sequence_name_TAL1	Rummagene Transcription Factor Associations 2026	1.0	null
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.011
GSE92434_1_v_0_ebf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO824	DepMap CRISPR Gene Dependency	1.0	6.40485
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9603
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1268
LS123	DepMap CRISPR Gene Dependency	1.0	7.22815
GSE136622_6_v_3_srpk3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Autosomal dominant intellectual developmental disorder 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.261
M140325	DepMap CRISPR Gene Dependency	1.0	2.12281
496100620_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.18391
SF268	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72332
Anisometropia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.343
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8983
PMC7846764-41598_2021_81773_MOESM3_ESM.xlsx-b-Heart_AA_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
496100422_TCx_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.70463
GSE196117_6_v_0_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1911
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7463
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58287
SW 48	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985164
NCIH2141	CCLE Cell Line Gene CNV Profiles	1.0	2.17537
LOUNH91	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37913
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6261
HCC1319	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.23137
HT-29	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917634
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Retinal degeneration protein 3	InterPro Predicted Protein Domain Annotations	1.0	null
KYAE1	DepMap CRISPR Gene Dependency	1.0	6.30992
Outer nuclear layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.109
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.846181
PMC9385264-NIHMS1828071-supplement-8.xlsx-AR-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
JIMT-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.11665
CX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.917634
MOLP2	CCLE Cell Line Gene CNV Profiles	1.0	1.44632
ovary	GTEx Tissue Gene Expression Profiles	-1.0	-0.865978
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837354
CYP2R1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29977
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5833
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Perturb_15807_KO_Chop_SRP350242	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	9.68203
cytoplasm	LOCATE Predicted Protein Localization Annotations	1.0	null
SW954	DepMap CRISPR Gene Dependency	1.0	2.21769
MELJUSO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71698
GSE196117_1_v_8_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17215
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916996
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877471
Preadipocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
GSE159678_6_v_2_chloroquine_human	RummaGEO Drug Perturbation Signatures	1.0	null
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-0.865978
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9207
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0252
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.90332
Rlc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.785
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8209
JIMT1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.49487
GSE205070_1_v_4_mertk_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5503627-oncotarget-08-39497-s003.xlsx-hyper_in_shUHRF1_KD-Unnamed_7_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9327
496100569_TCx_possible Alzheimer's disease_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.38315
GSE159678_6_v_3_chloroquine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.11599
EVSAT	DepMap CRISPR Gene Dependency	1.0	6.31103
SNU1079	CCLE Cell Line Gene CNV Profiles	1.0	1.39045
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9903
GSE138672_0_v_1_rabgef1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TE6	CCLE Cell Line Gene CNV Profiles	1.0	2.11258
496100447_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16639
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.918114
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838755
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7099
Alevin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.662