association dataset threshold value standardized value solitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.27519 H3K27ac_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null TestisIntersitial BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.56808 TO175T CCLE Cell Line Gene Expression Profiles -1.0 -2.04378 MA-10 cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.851 IZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.3782 MYC ChEA Transcription Factor Targets 1.0 null Brain Lower Grade Glioma_LGG_TCGA-E1-A7YI-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SCABER DepMap CRISPR Gene Dependency 1.0 5.8806 superficial stratum of THyB-I Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.45466 Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4718-01A-01R-1277-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superficial stratum of r9Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40492 tissues, cell types and enzyme sources TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.05175 salivarygland BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.959223 induseum griseum Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40972 GSE88819_0_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 33.2344 Entorhinal area, medial part, dorsal zone, layer 4 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08353 Caput epididymis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.232 mantle zone of r5Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.12195 trachea BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.967065 parvocellular part of the r9LRt Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.20822 HELA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15635 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2PK-01A-11R-A18M-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF85 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.6182 facial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.26128 SG in primary auditory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.951642 SK23 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09222 cytoplasmic part LOCATE Predicted Protein Localization Annotations 1.0 null ventrolateral prefrontal cortex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.16107 A4FUK CCLE Cell Line Gene Expression Profiles 1.0 1.67395 BMF CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.90655 FFAR4_KO_GDS4811_507_mouse_adipose GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HCC38 CCLE Cell Line Gene CNV Profiles 1.0 1.95164 Neuro D MotifMap Predicted Transcription Factor Targets 1.0 null CLPP_KO_GDS4791_374_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Retrosplenial area, dorsal part, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.11584 dorsal part of PHyB Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.55696 Field CA3, pyramidal layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.95528 Dux JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 36.4121 peroxisome LOCATE Predicted Protein Localization Annotations 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A6B5-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r9 part of the vestibular column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1857 VZ in hypothalamic portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.8063 496100634_HIP_no dementia_TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.40738 NFYA JASPAR Predicted Transcription Factor Targets 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null caudal ganglionic eminence_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.08572 HCC1954 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.57913 mantle zone of r5BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.37086 Mesothelioma_MESO_TCGA-MQ-A4LV-01A-11R-A34F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null intermediate stratum of r10Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.19879 primary visual cortex (striate cortex, area V1/17)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.48074 CALU6 CCLE Cell Line Gene Expression Profiles 1.0 1.54356 TE125T CCLE Cell Line Gene Expression Profiles -1.0 -2.09396 NCI-H2170 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11308 H3K27me3_T-cell acute lymphoblastic leukemia_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NCI-H520 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.96296 MFM-223 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.86901 NCIH292 CCLE Cell Line Gene CNV Profiles -1.0 -1.74666 HS 940.T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.868838 Infralimbic area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.89121 intracellular part LOCATE Predicted Protein Localization Annotations 1.0 null GSE88819_7_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null medial preoptic nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.22203 SG in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.07723 G59 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.10295 TDRD9 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44102 HCC202 DepMap CRISPR Gene Dependency 1.0 4.78381 IZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.38255 layer I of piriform cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.927007 rosiglitazone_mus musculus_gpl7202_gse19896 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null EKVX Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.864908 Brain Lower Grade Glioma_LGG_TCGA-HT-7481-01A-11R-2027-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SRC-2_KO_GDS5087_485_mouse_Heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4827-01A-02R-1420-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF418 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.6283 CAPAN1 CCLE Cell Line Gene CNV Profiles -1.0 -2.27341 CMAH_KO_GDS4770_420_mouse_muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null NKX2-3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.0 lateral part of Med Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.09406 Schnyder corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.236 posteroventral (inferior) parietal cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.68738 8305C CCLE Cell Line Gene CNV Profiles 1.0 1.54506 YAPC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.920542 Rhomboid nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.16238 salivary gland GTEx Tissue Gene Expression Profiles -1.0 -1.17497 ANKRD30A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.35754 mantle zone of m1AD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.73669 HT1197 CCLE Cell Line Gene CNV Profiles 1.0 2.19292 OSRC2 CCLE Cell Line Gene CNV Profiles 1.0 1.65204 CAL-148 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06015 Field CA3, stratum pyramidale Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.6487 MZ in midcingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.16137 NKX2-8 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.1769 Retrosplenial area, ventral part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.0744 hippocampus (hippocampal formation)_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.843944 SLU7 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.10788 periventricular stratum of TTe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.58664 submedius thalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.32258 primary motor cortex (area M1, area 4)_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.46768 mantle zone of r9Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.49036 Accessory olfactory bulb, granular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08067 496100426_PCx_no dementia_TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.30668 MZ in posteror frontal cortex (motor cortex) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.972243 NCI-H929 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.38325 CD33+_Myeloid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.849051 whole body TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050784 striatum_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.69754 nucleus subputaminalis Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.938691 Corpus epididymis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.049 GSE88819_5_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null parasolitary nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.40585 medullary hindbrain (medulla) Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1725 organism form TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.058652 Sarcoma_SARC_TCGA-WK-A8XX-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r7 portion of ambiguous motor nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.45165 striatum_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.57171 Brain Lower Grade Glioma_LGG_TCGA-KT-A74X-01A-11R-A32Q-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5458-01A-01R-1503-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mRNA_ESX1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12820 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.940327 TC71 CCLE Cell Line Gene Expression Profiles 1.0 1.40018 TBX3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.1091 GSE88819_1_v_4_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null anterior amygdaloid area Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.947357 HPAF-II Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.87604 lymph node HPA Tissue Protein Expression Profiles -1.0 -0.715589 ventral posterior medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.33789 r7 part of ventral parvicellular reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.91416 primary visual cortex (striate cortex, area V1/17)_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.13127 Dentate gyrus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.24023 magnocellular superficial hypothalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.0803 lateral hypothalamic area, anterior part Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.9009 posterior cortical nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.917751 preoptic BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.69284 ventrolateral prefrontal cortex_3 yrs_F_12836 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.17631 NCI-H2052 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0078 HSF4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.3281 KYSE520 CCLE Cell Line Gene CNV Profiles 1.0 1.39978 microbody LOCATE Predicted Protein Localization Annotations 1.0 null GRANTA519 CCLE Cell Line Gene CNV Profiles -1.0 -1.58058 tet1_21295276_mesc_v6.5_lof_mouse_gpl6887_gse26900 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations -1.0 -0.762068 GATA4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.9007 WFS1_KO_GSE33372_395_mouse_hypothalamus GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5189-01A-02R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MG-63 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.880845 Peroxisomal matrix COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.752 DLX5_Deficiency_GDS4443_356_mouse_E10.5 embryos otic vesicle GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null BMI1 ChEA Transcription Factor Targets 1.0 null intracellular organelle LOCATE Predicted Protein Localization Annotations 1.0 null ZBED1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.2169 H4K20me1_HeLa-S3_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null 37rc TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.829 Blood plasma TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.2 PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1 Rummagene Transcription Factor Associations 2026 1.0 null CALR_KO_GDS3680_149_mouse_embryonic stem cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null mRNA_DPPA5A_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null mantle zone of r7Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.29632 Dlx4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 14.2373 SIN3B ChEA Transcription Factor Targets 1.0 null periventricular stratum of m1AD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.93063 r9 part of the trigeminal column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.48713 KMM1 CCLE Cell Line Gene Expression Profiles 1.0 1.61144 Field CA3, stratum lucidum Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.13448 IKZF4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.68904 CNR_KO_GDS2820_636_mouse_Skin GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null zona incerta Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.896462 T98G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24153 LUDLU1 CCLE Cell Line Gene CNV Profiles 1.0 2.63708 superficial stratum of PHyB-V Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12066 SNU-668 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.50997 retinal degeneration DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.400826 ventrolateral prefrontal cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.58264 mantle zone of PHyB-I Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.02317 Pontine gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08802 cardiovascular GAD High Level Gene-Disease Associations 1.0 0.293278 DMS 454 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.864908 periventricular stratum of PalSe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1254 Kidney renal clear cell carcinoma_KIRC_TCGA-B2-5641-01A-01R-1541-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mantle zone of r6Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.82152 Prelimbic area, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.39403 Hand1::Tcf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 28.931 SQSTM1_OE_GDS2653_651_human_IMR-32 neuroblastoma cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null KNS60 CCLE Cell Line Gene Expression Profiles -1.0 -1.63192 m1AD (DM) part of periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.93063 Brain Lower Grade Glioma_LGG_TCGA-WY-A85B-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PPARD JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.1134 TBXT JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.4968 anterior (rostral) cingulate (medial prefrontal) cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.30072 primary motor cortex (area M1, area 4)_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.13127 lateral septal nucleus, intermediate part, periventricular Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12446 GB1 CCLE Cell Line Gene Expression Profiles -1.0 -1.7573 COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847077 PAX2 JASPAR Predicted Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7591-01A-11R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null nervous system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.046675 Alcoholic chronic pancreatitis GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.569897 mantle zone of r3Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.02489 amygdaloid complex_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.983048 MESSA CCLE Cell Line Gene Expression Profiles 1.0 1.72046 parafascicular nucleus of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.919527 paraterete nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12066 primary auditory cortex (core)_16 pcw_M_12879 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.835283 TCF7L1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 40.725 SREBF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 32.9836 CPC-N Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06015 MYC-19915707-AK7-human ChEA Transcription Factor Binding Site Profiles 1.0 null CLPP_KO_GSE40207_392_mouse_Testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null cerebellar cortex_17 pcw_F_12880 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.74023 thyroid BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.07371 breast GTEx Tissue Gene Expression Profiles 1.0 1.78961 SNU-216 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17972 CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.15096 GSE88819_1_v_2_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null Infralimbic area, layer 5 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.57342 SCC25 CCLE Cell Line Gene Expression Profiles -1.0 -1.55432 HCC1263 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.954758 Orbital area, medial part, layer 5 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.15954 Lateral septal complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.01692 Intermediate reticular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1261 SALL4-22934838-CD34+-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A7PW-01A-11R-A352-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null HS746T CCLE Cell Line Gene CNV Profiles -1.0 -1.55497 Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A6I0-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE88819_6_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null intermediate stratum of r8Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.18782 Eye TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.083 GSE140576_0_v_2_plag1_mouse RummaGEO Gene Perturbation Signatures 1.0 null stratum lacunosum-moleculare of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.18638 disease of anatomical entity DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.041209 Dlx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 13.9489 SOX18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.1164 BICR 78 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.866292 MGA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.7807 CP in caudal hippocampus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.978844 PSN1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.956391 hippocampus (hippocampal formation)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -2.09304 STYXL1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.93348 UMRC7 DepMap CRISPR Gene Dependency 1.0 2.10464 Brain Lower Grade Glioma_LGG_TCGA-FG-A6J1-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Heart BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.06751 Ovary BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 1.12359 GSE191105_0_v_3_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null liminal part of the r5 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.11986 Homeostasis model assessment of insulin resistance (dietary factor interaction) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.530103 TP63 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.6968 r8 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.30668 Brain Lower Grade Glioma_LGG_TCGA-DU-A7TI-01A-11R-A33Z-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PATU8988T DepMap CRISPR Gene Dependency 1.0 7.77297 MEF2C JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.8194 ISL2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 13.7749 mainolfactoryepithelium.MOE. BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.54738 SRC-2_Deficiency_GDS5087_270_mouse_Heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Thyroid BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.857604 Superior olivary complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.33564 r3 part of trigeminal sensory column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.02303 Sox3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.1612 VZ in ventromedial extrastriate cortex (VP) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.04061 Hatching gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.084 IKZF1_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null 721_B_lymphoblasts BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.994765 superficial stratum of r3Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.21473 Lateral septal nucleus, rostral (rostroventral) part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.20073 intermediate stratum of m1AD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.10051 FOXE1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 79.3014 Kidney renal papillary cell carcinoma_KIRP_TCGA-G7-A8LC-01A-11R-A36F-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null lateral subdivision of BNST Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.29478 Bed nuclei of the stria terminalis, posterior division, strial extension Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.13742 Orbital area, medial part, layer 6a Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.44759 r9 part of spinal vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.73763 Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8519-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SW 982 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.868838 HSF2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.7342 UBB_KO_GDS3906_496_mouse_Testis - 28 Days GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HCC1954 CCLE Cell Line Gene CNV Profiles -1.0 -1.90303 CREM-20920259-GC1-SPG-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null Orbital area, ventrolateral part, layer 5 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.15666 CREB3L4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.2715 MZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.83334 MKN-45 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15635 periventricular stratum of JcPV Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.0744 Superior olivary complex, lateral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.35707 superficial stratum of DG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.23098 Cauda epididymis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.971 IOMMLEE CCLE Cell Line Gene Expression Profiles 1.0 2.447 Sarcoma_SARC_TCGA-DX-AB2F-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC11956947-media-4.xlsx-C_GSEA_gene_sets-TGAYRTCA_ATF3_Q6_ATF3 Rummagene Transcription Factor Associations 2026 1.0 null Retina TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.083 paraventricular nucleus of hypothalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.23786 ventrolateral prefrontal cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.28214 KLF1-20508144-FETAL-LIVER-ERYTHROID-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null TBX20 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.0714 anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.13097 glaucoma DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.604201 ventrolateral prefrontal cortex_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.918055 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5187-01A-01R-1426-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCIH854 CCLE Cell Line Gene CNV Profiles 1.0 1.99894 retroreuniens nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.04756 NCIH1573 DepMap CRISPR Gene Dependency 1.0 2.84327 ventral paracommissural tectal nucleus, m1 part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.1011 r8 part of spinal vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.18999 Gut TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.117 SET2 DepMap CRISPR Gene Dependency 1.0 9.6567 CatSper complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.208 LHX8_Deficiency_GDS3254_600_mouse_Newborn ovaries GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null NCI-H1792 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.64461 Fasting insulin (dietary factor interaction) GWAS Catalog SNP-Phenotype Associations 2025 1.0 0.569897 raphe magnus nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.44772 HS 746T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.48196 Medial preoptic nucleus, lateral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.11004 amygdaloid complex_13 yrs_F_12831 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.960396 C3A CCLE Cell Line Gene CNV Profiles 1.0 1.34273 Frontal lobe TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.15 MOLM-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.988603 Brain Lower Grade Glioma_LGG_TCGA-S9-A89Z-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null SNU-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.45647 Anxiety Disorders CTD Gene-Disease Associations 1.0 1.4449 HOXB13 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.8558 ZNF530 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.55311 CXCR7_Deficiency_GDS3183_604_mouse_Neonatal semilunar valves GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null THP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50976 retroparafascicular area of thalamus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.1716 inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.54344 ECC4 DepMap CRISPR Gene Dependency 1.0 3.77725 ATF6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.2508 corneal epithelium TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.910093 NCIH650 DepMap CRISPR Gene Dependency 1.0 5.02745 Parapyramidal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.06028 SW579 DepMap CRISPR Gene Dependency 1.0 3.6227 mediodorsal nucleus of thalamus_24 pcw_M_12288 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.42922 Corneal endothelial dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.413 HOXA5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.4798 intermediate stratum of r7Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.91915 eye and adnexa disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.057102 RUNX2 ChEA Transcription Factor Targets 1.0 null Gfi1b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 19.8103 cornea TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.67821 primary somatosensory cortex (area S1, areas 3,1,2)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.92949 Sarcoma_SARC_TCGA-WK-A8XZ-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Taenia tecta, dorsal part, layer 3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.46575 GRANTA-519 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.35509 layer 1 of AOD cortex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.20542 SG in midlateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.06259 Plagl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.7717 Orbital area, medial part, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41235 SNU-398 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24153 primary motor-sensory cortex (samples)_16 pcw_M_12879 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.01223 nrf1_22586274_liver_lof_mouse_gpl4134_gse35124 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.191437 Prdm5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 27.423 PFKL_OE_GDS1980_203_mouse_dermal fibroblasts GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Blood platelet TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.2 cervix uteri GTEx Tissue Gene Expression Profiles 1.0 1.08352 IZ in inferolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.883303 periventricular stratum of PcPV Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.16284 outer CP in primary visual cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.826327 Lung adenocarcinoma_LUAD_TCGA-38-6178-01A-11R-1755-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NCI-H2009 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.69425 OVMIU DepMap CRISPR Gene Dependency 1.0 3.30963 TBX15 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0511 Submedial nucleus of the thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.15954 TCF4 MotifMap Predicted Transcription Factor Targets 1.0 null 496100354_PCx_dementia_no TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.78116 HCC1493 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.6937 SW837 CCLE Cell Line Gene CNV Profiles -1.0 -1.41591 BICR16 DepMap CRISPR Gene Dependency 1.0 5.57873 primary motor-sensory cortex (samples)_16 pcw_M_12287 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.77043 PK1 CCLE Cell Line Gene Expression Profiles 1.0 1.70176 HCC1319 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24153 RARA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 69.743 Orbital area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.01983 PMC7481169-277_2020_4194_MOESM7_ESM.xlsx-RUNX1_R139G-Unnamed_1_RUNX1 Rummagene Transcription Factor Associations 2026 1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-GN-A4U7-06A-21R-A32P-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Orbital area, ventrolateral part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.24618 TBX19 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.8608 CDC25B CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.66565 primary auditory cortex (core)_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.13127 NFYC JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.3524 ventrolateral prefrontal cortex_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.853528 PMC12660214-Supplementaryfile1.xlsx-Genes_Human_with_ATF3-binding-Genes_with_ATF3_combined_ATF3 Rummagene Transcription Factor Associations 2026 1.0 null SALL4 ChEA Transcription Factor Targets 1.0 null lateral septal nucleus, intermedio-intermediate part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.00296 mRNA_NRIP1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null SUCLG2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.81079 r3 part of magnocellular medial vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.00007 JUN ENCODE Transcription Factor Targets 1.0 null Posterior polymorphous corneal dystrophy 1 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 2.17 ONCODG1 CCLE Cell Line Gene Expression Profiles -1.0 -1.71473 CD34+ BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -0.823982 Perturb_17268_KO_Sox30_SRP139811 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations -1.0 -20.0 Manchette COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.924 496100547_HIP_no dementia_no TBI_82_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.74469 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-DS-A1OB-01A-11R-A14Y-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null KS1 CCLE Cell Line Gene CNV Profiles -1.0 -1.37102 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4976-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null ZNF217 ChEA Transcription Factor Targets 1.0 null Anterior cingulate area, dorsal part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.20214 RH18 CCLE Cell Line Gene CNV Profiles 1.0 1.36888 496100584_HIP_probable Alzheimer's disease_no TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.59333 ZNF768 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.9704 primary somatosensory cortex (area S1, areas 3,1,2)_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.966934 496100611_FWM_no dementia_no TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.74806 primary auditory cortex (core)_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.987163 outer plexiform zone in extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.08565 HMEL CCLE Cell Line Gene Expression Profiles 1.0 2.05325 ZNF416 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.6522 Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5468-01A-01R-1503-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null DFCI024 CCLE Cell Line Gene Expression Profiles 1.0 3.40596 r1 part of vestibulocerebellar nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.257 r9 part of spinal trigeminal nucleus, interpolar part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.30922 COLO680N CCLE Cell Line Gene Expression Profiles -1.0 -1.50254 Prelimbic area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.22412 NCIH1666 CCLE Cell Line Gene CNV Profiles 1.0 2.14839 Posterolateral visual area, layer 4 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.0346 CCC5 DepMap CRISPR Gene Dependency 1.0 3.10479 anterior pretectal nucleus, ventral superficial part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40492 VZ in subcallosal region Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24406 mantle zone of VTTh Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00721 mediodorsal nucleus of thalamus_4 mos_M_12296 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.26893 Liver BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.10181 pedunculo(pontine) tegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.908281 KMBC2 CCLE Cell Line Gene Expression Profiles -1.0 -1.53398 PBX1-22567123-OVCAR3-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null NCIH2030 CCLE Cell Line Gene CNV Profiles -1.0 -1.38685 H3K4me3_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE88819_1_v_8_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null HUPT3 CCLE Cell Line Gene CNV Profiles -1.0 -1.38967 posterior (caudal) superior temporal cortex (area 22c)_37 yrs_M_12303 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.41131 HTK CCLE Cell Line Gene Expression Profiles -1.0 -1.97202 NCI-H1792 COSMIC Cell Line Gene CNV Profiles -1.0 -3.2703 striatum_16 pcw_M_12287 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.893615 LHX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.5108 BARX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.659 SNU466 CCLE Cell Line Gene Expression Profiles -1.0 -1.51416 CLPP_KO_GDS4791_104_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null suboptic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.12989 KIJK CCLE Cell Line Gene Expression Profiles 1.0 1.74648 Kidney renal papillary cell carcinoma_KIRP_TCGA-IZ-8196-01A-11R-2404-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null COV362 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0581 genetic disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.042564 EVSAT DepMap CRISPR Gene Dependency 1.0 4.336 496100352_FWM_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.92289 Atoh1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.6613 Brain Lower Grade Glioma_LGG_TCGA-DU-8166-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-B8-A54I-01A-21R-A33J-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null mediodorsal nucleus of thalamus_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.68938 dorsal lateral geniculate nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.02666 K-562 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847077 rhombomere 10 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.01598 dorsal spiriform nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.24431 Primary somatosensory area, barrel field, layer 6b Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12351 lateral septal nucleus, intermedio-dorsal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.85883 NCIH1299 CCLE Cell Line Gene Expression Profiles -1.0 -1.57689 P3HR1 CCLE Cell Line Gene Expression Profiles 1.0 2.09615 NR6A1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.4597 SR786 CCLE Cell Line Gene CNV Profiles 1.0 1.34785 ONECUT3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 88.1182 NDUFA1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas -1.0 -2.01001 KPNYN DepMap CRISPR Gene Dependency 1.0 2.36561 PSN1 CCLE Cell Line Gene CNV Profiles 1.0 1.57635 Sense organ TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.083 POU6F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.3991 esr1_21299862_mcf7_lof_human_gpl570_gds4065 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.179552 JURLMK1 DepMap CRISPR Gene Dependency 1.0 3.22405 Accessory olfactory bulb, mitral layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.07635 cerebellar cortex_12 pcw_F_13060 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.940327 JL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.1815 Female accessory gland TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.732 ZNF652 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.0579 corneal edema DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 1.27737 hilus of the DG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.79844 GATA1::TAL1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.4779 LOXL2_KD_GSE35600_688_human_MDA-MB-231 cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null CAPAN-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.04147 disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.040094 SUIT2 CCLE Cell Line Gene CNV Profiles -1.0 -1.50507 TBX5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.0161 MZ in medial temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.28704 POLR2A ENCODE Transcription Factor Targets 1.0 null Orbital area, ventrolateral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.19744 posterior (caudal) superior temporal cortex (area 22c)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.07749 NCIH2110 DepMap CRISPR Gene Dependency 1.0 2.1141 liminal part of the r7 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.25692 primary visual cortex (striate cortex, area V1/17)_13 pcw_F_12834 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.19397 THRB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 71.9565 magnocellular (medial) division of MD Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.89946 ovary BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.05286 TGF-beta_OE_GDS2974_137_mouse_corneas GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null H2AFZ_CD14-positive monocyte_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PMC10245467-mmc3.pdf-46-ZNF487_ZNF487 Rummagene Transcription Factor Associations 2026 1.0 null spinalcordlower BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.890822 superficial stratum of TSPaA Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.75399 organelle LOCATE Predicted Protein Localization Annotations 1.0 null hippocampus (hippocampal formation)_12 pcw_F_12960 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.852942 THP1 CCLE Cell Line Gene CNV Profiles -1.0 -1.8778 pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null superficial stratum of TTe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.38724 Inferior colliculus, central nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.47771 KYSE-520 COSMIC Cell Line Gene CNV Profiles 1.0 2.14116 RUNX3_GM12878_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null Postsubiculum, layer 3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.21473 Corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.047 Uterine Carcinosarcoma_UCS_TCGA-N5-A59F-01A-11R-A28V-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null amoeba TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 2.17131 ZR-75-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.989146 Lung adenocarcinoma_LUAD_TCGA-97-A4M6-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null RH30 DepMap CRISPR Gene Dependency 1.0 15.8603 Nobox JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 14.3947 RMUGS DepMap CRISPR Gene Dependency 1.0 3.64283 ML-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.44644 cellular_component LOCATE Predicted Protein Localization Annotations 1.0 null Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-5679-01A-11R-1541-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null superficial stratum of r7Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.44871 UM-UC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0078 SCP2 sterol-binding domain InterPro Predicted Protein Domain Annotations 1.0 null NCI-H1373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.920542 BXPC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.27878 Microbody lumen COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.75 pancreas BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.46784 MZ in dorsomedial parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.6671 CAMA1 CCLE Cell Line Gene Expression Profiles 1.0 2.30532 hsa-miR-335-5p MiRTarBase microRNA Targets 1.0 null FOXC1 JASPAR Predicted Transcription Factor Targets 1.0 null NCIH2291 CCLE Cell Line Gene CNV Profiles -1.0 -2.06158 PSS131R DepMap CRISPR Gene Dependency 1.0 2.421 HEC59 CCLE Cell Line Gene CNV Profiles -1.0 -1.37118 TBR1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.1341 EZH2_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6956-01A-21R-2016-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.71615 Integrin alpha8-beta1 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.082 r10 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.9242 496100633_TCx_no dementia_TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.01167 Principal sensory nucleus of the trigeminal Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.47731 NCI-H1793 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.02336 Prostate adenocarcinoma_PRAD_TCGA-G9-6347-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null amygdaloid complex_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.24587 dexamethasone_homo sapiens_gpl4133_gse42619 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null hippocampus (hippocampal formation)_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.979004 Accessory olfactory bulb Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.08835 GTL-16 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.847077 medioventral part of putamen Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.24754 Medial amygdalar nucleus, anteroventral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.2181 intermediate stratum of r3Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.00007 EZH2_myotube_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null dorsal thalamus_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.52682 Prostate adenocarcinoma_PRAD_TCGA-2A-A8VO-01A-11R-A37L-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MGA::EVX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.2273 ZNF696 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.339 hippocampus (hippocampal formation)_16 pcw_M_12879 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.10581 GSE247764_4_v_2_nell2_mouse RummaGEO Gene Perturbation Signatures 1.0 null layer III of rostral entorhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.07184 rostral periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1966 RPMI-7951 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.22914 BHY Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11308 105KC Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24841 PcPV part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.16192 KARPAS-1106P Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.957724 Cervical mucus TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.699 sensory system disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.054351 Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6477-01A-11R-1873-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null MFE296 CCLE Cell Line Gene Expression Profiles 1.0 1.63119 head TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.054782 Posterior parietal association areas Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.28163 reticulotegmental nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.00095 MYF6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3286 ventricular (matrix) zone of pons Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.63725 NCIH2087 CCLE Cell Line Gene Expression Profiles 1.0 1.89504 r10 part of the trigeminal column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.64118 SRF JASPAR Predicted Transcription Factor Targets 1.0 null Dorsal peduncular area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.937 H3K27me3_BJ_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null A-431 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.22935 Infralimbic area, layer 6a Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.14371 SKMEL3 CCLE Cell Line Gene CNV Profiles 1.0 1.67989 ZNF382 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.1863 GSE88819_1_v_12_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null IKZF1 ENCODE Transcription Factor Targets 1.0 null SNU324 CCLE Cell Line Gene CNV Profiles -1.0 -1.7919 BMI1-19503595-MEFC-mouse ChEA Transcription Factor Binding Site Profiles 1.0 null mantle zone of r7Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.25692 Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4638-01A-02R-1325-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 496100586_HIP_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.46816 dorsolateral prefrontal cortex_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.937435 TBX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.6348 Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.10957 KE39 CCLE Cell Line Gene CNV Profiles 1.0 1.59224 HCC2157 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18976 RUNX2-22187159-PCA-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null Accessory olfactory bulb, glomerular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.20263 PMC11370252-12864_2024_10619_MOESM2_ESM.xlsx-EMP_AA-Gene_Name_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null ARX_KO_GSE12609_3_mouse_brain (subpallium, Pou3f-expressing cells) GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null ZNF680 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.4794 cochlear nuclei Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.95297 eye disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.059649 upper (rostral) rhombic lip Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.09002 ZNF384 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 155.296 periaqueductal gray substance, dorsolateral portion Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.26784 HCC2302 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24153 RCM-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.88031 corneal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.703536 SERPINB1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.89918 Adrenocortical carcinoma_ACC_TCGA-OR-A5LM-01A-11R-A29S-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null r6 part of ventral parvicellular reticular formation Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.68799 WFS1_KO_GDS4526_111_mouse_brain GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Skin Cutaneous Melanoma_SKCM_TCGA-GN-A266-06A-11R-A18T-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null intermediate stratum of r6Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.68799 intermediate stratum of TTe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.48173 rhombomere 6 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.54062 fallopian tube GTEx Tissue Gene Expression Profiles -1.0 -1.17497 substantia nigra, compact part Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.830587 Urogenital Abnormalities CTD Gene-Disease Associations 1.0 1.17235 intermediate stratum of IC Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.16664 H3K27me3_CD14-positive monocyte_hg19_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null KMS-11 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.919984 Anterior olfactory nucleus, dorsal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.34369 EP300_GM12878_hg19_4 ENCODE Transcription Factor Binding Site Profiles 1.0 null TEF-1 MotifMap Predicted Transcription Factor Targets 1.0 null posteroventral (inferior) parietal cortex_30 yrs_F_12290 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.11733 EZH2_endothelial cell of umbilical vein_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null TCC-PAN2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.88031 anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -2.62004 HUP-T4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.0581 NCOA2_KO_GSE41558_19_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null SCC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50976 HINFP JASPAR Predicted Transcription Factor Targets 1.0 null NDUFA8 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.91832 PMC12660214-Supplementaryfile1.xlsx-Genes_Human_with_ATF3-binding-ATF3_TGAYRTCA_ATF3 Rummagene Transcription Factor Associations 2026 1.0 null mantle zone of TTe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.94338 GSE241701_1_v_0_daxx_mouse RummaGEO Gene Perturbation Signatures -1.0 null Npas2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.5223 ETS1-20019798-JURKAT-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null SOX10 MotifMap Predicted Transcription Factor Targets 1.0 null S117 DepMap CRISPR Gene Dependency 1.0 3.01857 H4K20me1_myotube_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H292 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50976 mantle zone of r10Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.61522 central nucleus of inferior colliculus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.08369 CORL105 DepMap CRISPR Gene Dependency 1.0 2.2218 r11 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.37086 lateral hemisphere of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.856513 primary visual cortex (striate cortex, area V1/17)_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.38228 Field CA3, stratum oriens Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.20785 SNU1214 CCLE Cell Line Gene Expression Profiles -1.0 -2.36895 Dentate gyrus, polymorph layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.62252 r6 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.63745 Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7423-01A-11R-2081-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null magnocellular division of VA Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.868139 SKN DepMap CRISPR Gene Dependency 1.0 5.02384 r10 part of the vestibular column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.61522 Glaucoma DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.117 liminal part of the r6 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.8262 HS737T CCLE Cell Line Gene Expression Profiles 1.0 1.49598 mantle zone of r9Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1834 posteromedial visual area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41975 intracellular membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null Taenia tecta, dorsal part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.75014 HCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.954758 CLPP_KO_GSE40207_378_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null RT-112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17721 WM983B CCLE Cell Line Gene CNV Profiles 1.0 1.97861 PANC0813 CCLE Cell Line Gene CNV Profiles -1.0 -1.70208 E2F4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.3634 dorsolateral part of Int Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.85007 striatal septum Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.35446 LK2 CCLE Cell Line Gene Expression Profiles 1.0 1.39595 U266B1 CCLE Cell Line Gene CNV Profiles -1.0 -1.35336 SNU283 CCLE Cell Line Gene Expression Profiles 1.0 1.41873 SG in primary somatosensory cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.27102 superficial stratum of PHyB-D Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 3.08404 cancer GAD High Level Gene-Disease Associations 1.0 0.293278 Parasubthalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12636 GSE183994_3_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Orbital area, medial part, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.84049 Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5561-01A-01R-1592-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE246461,GSE246463_5_v_2_mecp2_mouse RummaGEO Gene Perturbation Signatures -1.0 null IZ in lateral temporal-occipital cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.70663 HDLM2 CCLE Cell Line Gene CNV Profiles -1.0 -1.53046 STAT1::STAT2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.979 Posterior parietal association areas, layer 5 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00203 hindbrain Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.1857 496100546_TCx_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.85127 496100551_PCx_no dementia_no TBI_87_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.04201 AMZ2 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.23319 hippocampus (hippocampal formation)_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.962498 CORL279 CCLE Cell Line Gene Expression Profiles -1.0 -3.00429 HCC70 DepMap CRISPR Gene Dependency 1.0 2.22245 Dentate gyrus, granule cell layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.67996 BICR31 DepMap CRISPR Gene Dependency 1.0 2.24708 hsa-miR-1261 TargetScan Predicted Nonconserved microRNA Targets 1.0 0.843347 Seminal plasma TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.053 H3K27me3_Mobilized CD34 Primary Cells Roadmap Epigenomics Histone Modification Site Profiles 1.0 null inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.21001 GSE94814_1_v_3_reck_mouse RummaGEO Gene Perturbation Signatures 1.0 null outer SZ in midlateral extrastriate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.05035 intermediate stratum of r9Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.73763 Arid3a JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.2963 Esrrg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 19.5685 superficial stratum of m1AD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.10957 NCI-H1648 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.66295 NCI-H1666 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.14468 dorsal peduncular cortex, periventricular part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.58572 cerebellum HPA Tissue Protein Expression Profiles -1.0 -0.838545 NCIH1792 CCLE Cell Line Gene CNV Profiles -1.0 -3.21049 MZ in retrosplenial cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.38286 Brain Lower Grade Glioma_LGG_TCGA-DU-5871-01A-12R-1708-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null UM-UC-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.914257 496100570_HIP_no dementia_no TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.13975 laterodorsal subdivision of area 8 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.66458 LOUNH91 CCLE Cell Line Gene Expression Profiles 1.0 1.55566 reticular formation of CoPD Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.12303 stratum pyramidale of rostral CA2 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.70212 RMUG-S Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.09222 EBC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.912219 OSR1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.9426 Geniculate group, dorsal thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.78041 NCI-H2171 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.10476 caudal (posterior) extramural migratory stream Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.10991 autosomal genetic disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.043878 EFM-192A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.880845 Brain Lower Grade Glioma_LGG_TCGA-FG-8185-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null stratum pyramidale of caudal CA1 Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.960829 JUN_H1-hESC_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null sense organ TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.311507 brownfat BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.868396 Dorsal part of the lateral geniculate complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.28644 SK-MEL-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.74538 TC32 CCLE Cell Line Gene Expression Profiles 1.0 2.05514 HDAC2_Deficiency_GDS2624_658_mouse_Embryonic heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PBX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.3333 WBP4 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.47311 TestisGermCell BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 2.07018 Olfactory placode TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.671 superficial stratum of r10Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.44871 retinal disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.229716 Brain Lower Grade Glioma_LGG_TCGA-VM-A8CB-01A-11R-A36H-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Shox2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.1605 Bed nuclei of the stria terminalis, anterior division, oval nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.38096 IZ in caudal perirhinal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.67826 YMB1 CCLE Cell Line Gene Expression Profiles 1.0 1.3749 TRIM24_Deficiency_GDS3087_609_mouse_Hepatocellular carcinoma (HCC) tumors GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null MDA-MB-436 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.01591 HCC1569 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.34668 TBX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.3295 r7 part of the trigeminal column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.30407 r10 part of spinal vestibular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.19879 CREM ChEA Transcription Factor Targets 1.0 null Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SN-01A-11R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null PMC3500769-srep00875-s3.xls-PAX2-Time_1_PAX2 Rummagene Transcription Factor Associations 2026 1.0 null KPNYN CCLE Cell Line Gene Expression Profiles 1.0 1.4362 CREM JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3013 Blood TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 1.0 1.2 496100359_PCx_no dementia_no TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.32324 inner CP in rostral cingulate cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.987473 membrane-bounded organelle LOCATE Predicted Protein Localization Annotations 1.0 null ventral reuniens nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40403 lateral septal nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.08078 intermediate part of PHyB Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.02174 intercalated nucleus of medulla Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.51798 HCC1143 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.914257 EP300_GM12878_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE191105_2_v_4_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.829422 CREB3L3 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.8039 mbl2 TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.156 peripeduncular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.33879 NR1H2::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.32 IZ in posteror frontal cortex (motor cortex) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.03063 ZNF217-24962896-MCF7-HUMAN ChEA Transcription Factor Binding Site Profiles 1.0 null LN235 DepMap CRISPR Gene Dependency 1.0 3.21845 estradiol_mus musculus_gpl4134_gse23072 GEO Signatures of Differentially Expressed Genes for Small Molecules 1.0 null mantle zone of the IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40752 NCI-H1869 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.30248 hsa-miR-548c-3p TargetScan Predicted Conserved microRNA Targets 1.0 0.348832 ETS1 ChEA Transcription Factor Targets 1.0 null pontomedullary hindbrain Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.11986 COLO 794 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.91501 Acute Myeloid Leukemia_LAML_TCGA-AB-2855-03A-01T-0736-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null primary motor cortex (area M1, area 4)_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.69754 GSE183994_1_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Prelimbic area, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.01452 autosomal dominant disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.300533 Orbital area, medial part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.41975 Taenia tecta, dorsal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.64849 superficial stratum of PcPV Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.40773 Orbital area, lateral part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.21763 Dentate gyrus, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.03581 LOXL2_DEPLETION_GDS4884_88_human_MDA-MB-231 cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Infralimbic area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.57206 Taenia tecta, dorsal part, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.61685 HEL9217 DepMap CRISPR Gene Dependency 1.0 2.29249 CEBPB ENCODE Transcription Factor Targets 1.0 null FOXO1_KD_GDS2720_477_mouse_LSK GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null mantle zone of PHyB-D Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.55741 hippocampus (hippocampal formation)_8 pcw_M_13058 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.957642 EZH2 ENCODE Transcription Factor Targets 1.0 null lateral tuberal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.80745 ST486 CCLE Cell Line Gene Expression Profiles 1.0 1.63093 r8 part of the vestibular column Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.06902 PFKL_OE_GDS4410_75_human_Biceps muscle GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7430-01A-11R-2132-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null inferolateral temporal cortex (area TEv, area 20)_2 yrs_F_12979 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.926186 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5009-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NFYB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.7937 CREB3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.9257 Rarb JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 49.8039 COLO 206F Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11944 Sarcoma_SARC_TCGA-JV-A5VF-01A-11R-A29R-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Posterior parietal association areas, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.13024 LBP-1 MotifMap Predicted Transcription Factor Targets 1.0 null GATA2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.2185 VZ in superolateral temporal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -2.70657 Genital Diseases, Female CTD Gene-Disease Associations 1.0 1.19542 U87MG CCLE Cell Line Gene CNV Profiles -1.0 -1.32817 Ciliary muscle TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.773 Taenia tecta Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.36437 DOK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01175 Dlx5 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.5914 retina BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.856533 GPR120_KO_GDS4830_413_mouse_liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GSE191105_2_v_3_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null cerebellar cortex_23 yrs_M_12300 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.0529 Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A7XC-01A-11R-A38B-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 59M CCLE Cell Line Gene Expression Profiles -1.0 -2.48928 corpus callosum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.09275 GR-M Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11308 H2AFZ ENCODE Transcription Factor Targets 1.0 null OVCA 420 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11308 COGN305 DepMap CRISPR Gene Dependency 1.0 2.25025 PFKL_OE_GDS4410_202_human_biceps GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null granule cell layer of the DG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.38198 Septohippocampal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.72034 HEC6 CCLE Cell Line Gene CNV Profiles -1.0 -1.3272 496100630_PCx_no dementia_no TBI_78_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.16476 VMRCRCW CCLE Cell Line Gene CNV Profiles -1.0 -2.59447 superficial stratum of r5BL Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.29382 mediodorsal nucleus of thalamus_21 pcw_M_12886 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.950861 ezetimibe_mus musculus_gpl2995_gse39813 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null SNU283 CCLE Cell Line Gene CNV Profiles 1.0 1.34614 ventrolateral prefrontal cortex_10 mos_M_12977 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.55133 cerebellar cortex_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.929248 LPS6 DepMap CRISPR Gene Dependency 1.0 2.7501 H3K4me1_GM12878_hg19_1 ENCODE Histone Modification Site Profiles 1.0 null KMS18 DepMap CRISPR Gene Dependency 1.0 2.28255 Medial geniculate complex Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.20336 SIRT1_KO_GDS3666_295_mouse_liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null shell part of the anterobasal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.42002 GTPase activator complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.419 TBX18 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.3655 striohypothalamic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.00971 496100360_FWM_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.23409 DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.22689 Sarcoma_SARC_TCGA-K1-A42X-02A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null NR2F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 56.7353 dorsal cochlear nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.00984 mast cells BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.23083 NCIH929 CCLE Cell Line Gene CNV Profiles -1.0 -1.67844 NCI-H2030 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24841 Medial pretectal area Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.07056 medial tuberal nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.52653 NEMP1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 4.52002 SNU1076 CCLE Cell Line Gene CNV Profiles 1.0 2.91895 Anterior hypothalamic nucleus, central part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.04129 Sox1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 26.4578 cerebellar cortex_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.06595 mRNA_ASCL2_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells 1.0 null NCI-H727 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.35002 YMB-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.988603 EFO-27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17721 dorsal paracommissural tectal nucleus, m1 part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.11244 superficial stratum of the IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40838 Testicular cancer cell line TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.99 outer SZ in posterior parahippocampal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.25874 primary somatosensory cortex (area S1, areas 3,1,2)_18 yrs_M_12984 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.26893 molecular layer of the DG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.15537 FXR MotifMap Predicted Transcription Factor Targets 1.0 null Isl1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 22.1128 A549 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0078 monogenic disease DISEASES Text-mining Gene-Disease Association Evidence Scores 1.0 0.043242 Dorsal peduncular area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.70339 Runx1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 18.1225 COLO205 CCLE Cell Line Gene Expression Profiles 1.0 1.41392 CLPP_KO_GDS4791_107_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null IZ in posteroinferior (ventral) parietal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.1129 Puberty, Precocious CTD Gene-Disease Associations 1.0 1.14678 animal TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.050784 olfactory bulb Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 1.48167 Dorsal peduncular area, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.04178 Six4 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 16.0184 intermediate part of StrSe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.85829 dorsal part of m1A Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.73669 SNU349 CCLE Cell Line Gene Expression Profiles -1.0 -1.9077 NCI-H345 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.39094 MZ in dorsomedial extrastriate cortex (V2) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.880921 PKNOX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.3949 central nucleus of the inferior colliculus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.16614 THRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 30.8242 orbital frontal cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.57269 Reflex, Abnormal CTD Gene-Disease Associations 1.0 1.36332 MM160113 DepMap CRISPR Gene Dependency 1.0 2.96591 YAMATO DepMap CRISPR Gene Dependency 1.0 2.40072 PrefrontalCortex BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.14344 ITPKC CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.62407 dorsal periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.4709 SIN3B-21632747-MESC-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null LU-135 COSMIC Cell Line Gene CNV Profiles 1.0 2.14116 Copula pyramidis, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.28891 COLO 741 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.864908 MAFF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.8214 NKX2-4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.5106 SKRC31 CCLE Cell Line Gene Expression Profiles 1.0 2.34462 KLF1 ChEA Transcription Factor Targets 1.0 null primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.838022 NCIH1568 CCLE Cell Line Gene Expression Profiles -1.0 -1.53251 PBX1 ChEA Transcription Factor Targets 1.0 null Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6IJ-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null cerebellar cortex_1 yrs_F_12830 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.962498 KRAP_Deficiency_GDS3528_564_mouse_Liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PANC 08.13 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.84935 GSE131377_1_v_0_spocd1_mouse RummaGEO Gene Perturbation Signatures -1.0 null Sarcoma_SARC_TCGA-X6-A7WC-01A-12R-A355-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GRM CCLE Cell Line Gene CNV Profiles 1.0 1.64295 CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.88031 r5 part of A5 noradrenergic cell group Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.10583 hsa-miR-3942-3p TargetScan Predicted Nonconserved microRNA Targets 1.0 1.20993 r10 part of spinal trigeminal nucleus, caudal part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.05969 EFE184 DepMap CRISPR Gene Dependency 1.0 5.39552 NCOA2_KO_GDS5087_24_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null ARID3A JASPAR Predicted Transcription Factor Targets 1.0 null eye TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.379499 PMC11749115-loae020_suppl_Supplementary_Table_S2.xlsx-CHOP-high-gene_DDIT3 Rummagene Transcription Factor Associations 2026 1.0 null dorsal peduncular cortex, intermediate part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.48173 CALU3 CCLE Cell Line Gene CNV Profiles -1.0 -2.25342 testis BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 2.09859 superior periolivary nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.20336 striatum_40 yrs_F_12304 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.10282 HS888T CCLE Cell Line Gene Expression Profiles -1.0 -1.61125 HEL9217 CCLE Cell Line Gene Expression Profiles 1.0 1.54367 CREB3L1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.8743 protozoan form TISSUES Text-mining Tissue Protein Expression Evidence Scores 1.0 0.81565 KMS20 DepMap CRISPR Gene Dependency 1.0 2.13534 TCF7L2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.7961 CEBPB_HepG2_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null Posterior parietal association areas, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.01249 dorsal subdivision of VLC Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 2.36223 CP in temporal polar cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.957671 EOMES JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.0197 H3K27me3_mammary epithelial cell_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZBTB20_Deficiency_GDS3718_517_mouse_Developing hippocampus GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null RUNX3_GM12878_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null shell of SCH Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.75399 EZH2_HepG2_hg19_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null primary visual cortex (striate cortex, area V1/17)_3 yrs_M_12980 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.47046 hippocampus (hippocampal formation)_12 pcw_F_12835 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.02016 midbrain reticular formation Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.76401 TR146 DepMap CRISPR Gene Dependency 1.0 2.35559 orbital frontal cortex_36 yrs_M_12302 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.08974 Parkin_OE_GDS4476_55_human_U87MG GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Bladder Urothelial Carcinoma_BLCA_TCGA-S5-A6DX-01A-11R-A31N-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null paraventricular nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -0.861852 SK-MEL-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.02336 Infralimbic area, layer 2 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.78559 FOXL1 JASPAR Predicted Transcription Factor Targets 1.0 null DU4475 DepMap CRISPR Gene Dependency 1.0 2.8813 dorsolateral prefrontal cortex_21 pcw_F_12365 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 2.47358 CLPP_KO_GSE40207_388_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null inferior olive, medial nucleus Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.54698 Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5006-01A-01R-1334-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null TBX4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.6522 parastrial preoptic nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.10672 superficial stratum of THyB-D Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.24087 NCIH520 CCLE Cell Line Gene CNV Profiles -1.0 -1.91091 JcPV part of the periaqueductal gray Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.0744 YMB-1-E Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.988603 GSE129402,GSE129405_1_v_0_tcf7_mouse RummaGEO Gene Perturbation Signatures -1.0 null NCI-H510A Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11308 RUNX3 ENCODE Transcription Factor Targets 1.0 null small intestine GTEx Tissue Gene Expression Profiles -1.0 -1.17497 Epididymosome COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.352 COV318 CCLE Cell Line Gene CNV Profiles 1.0 1.43537 MOGGCCM CCLE Cell Line Gene Expression Profiles -1.0 -2.93129 r7 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -2.19035 superficial stratum of PSPa Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1757 Sarcoma_SARC_TCGA-HB-A3YV-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null IZ in ventrolateral prefrontal cortex Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.993957 HCC1569 CCLE Cell Line Gene CNV Profiles 1.0 1.61633 HMY-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0078 Jun JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.0142 ESR1_KD_GDS4065_452_human_MCF7 estrogen-sensitive breast cancer cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null FOXD3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 82.6525 ventrolateral prefrontal cortex_15 yrs_M_12299 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.46768 NKX2-5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.755 Medial geniculate complex, ventral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.08802 CiliaryGanglion BioGPS Human Cell Type and Tissue Gene Expression Profiles 1.0 0.843771 Sarcoma_SARC_TCGA-K1-A42X-01A-11R-A24X-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12879 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.08974 SKBR3 CCLE Cell Line Gene CNV Profiles 1.0 1.51059 HSF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.162 Vesicle lumen COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.253 rhombomere 7 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.88896 mantle zone of r8Ve Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.0709 r9 alar plate Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.57209 primary somatosensory cortex (area S1, areas 3,1,2)_24 pcw_M_12288 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -0.863248 H3K9me3_erythroblast_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null HCC364 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.18976 primary auditory cortex (core)_19 pcw_F_12885 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.64154 Orbital area, ventrolateral part, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.43382 Paramedian lobule, molecular layer Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.15745 LU99 CCLE Cell Line Gene Expression Profiles -1.0 -1.5862 HT-55 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.15635 Infralimbic area, layer 2/3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.56433 DMS454 CCLE Cell Line Gene CNV Profiles 1.0 1.69438 mantle zone of r10Tr Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.64492 GATA1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.9382 pyramidal layer of IG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.40838 lateral part of r5B Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.36807 SHSY5Y CCLE Cell Line Gene Expression Profiles -1.0 -1.91708 Brain Lower Grade Glioma_LGG_TCGA-HT-7469-01A-11R-2256-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null GSE247764_5_v_2_nell2_mouse RummaGEO Gene Perturbation Signatures 1.0 null Msx3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 15.4781 H3K27me3_cardiac mesoderm_hg19_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null KYSE-520 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.24381 PMC6823153-NIHMS1535502-supplement-3.xlsx-LSD1_SupplData1-Supplementary_Data_1_Potential_common_target_genes_of_LSD1_and_GATA3_GATA3 Rummagene Transcription Factor Associations 2026 1.0 null Reticulum trabeculare TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.828 Hippocampal region Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.05221 superficial stratum of r6Lim Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.32504 intermediate stratum of DG Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.80325 amygdaloid complex_9 pcw_M_12833 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 1.16171 KMS-34 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.02392 cell part LOCATE Predicted Protein Localization Annotations 1.0 null Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.21239 LMX1A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.1102 496100420_PCx_probable Alzheimer's disease_no TBI_85_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.06717 AGS Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.957724 Posterior polymorphous corneal dystrophy 3 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.376 PMC9378714-41467_2022_31999_MOESM10_ESM.xlsx-Supplementary_Data_7-Supplementary_Data_7_Collation_of_genes_possible_regulated_or_co-expressed_with_ELF5_ELF5 Rummagene Transcription Factor Associations 2026 1.0 null Secretory granule lumen COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.419 lateral orbital frontal cortex (area 12/47) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.45681 LXF289 CCLE Cell Line Gene Expression Profiles -1.0 -1.72826 Lymphoma_burkitts(Raji) BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.43837 Prelimbic area, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.67031 HCC4017 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.0078 SUDHL8 CCLE Cell Line Gene CNV Profiles 1.0 1.32904 Acute Myeloid Leukemia_LAML_TCGA-AB-2861-03A-01T-0736-13 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Facial motor nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.45165 Lyf-1 MotifMap Predicted Transcription Factor Targets 1.0 null Field CA3 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.15114 NURR1 MotifMap Predicted Transcription Factor Targets 1.0 null LHX2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.438 Cytoplasmic vesicle lumen COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.362 mRNA_SFPI1_19796622 ESCAPE Omics Signatures of Genes and Proteins for Stem Cells -1.0 null lower (caudal) rhombic lip Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.930924 Arid3b JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 21.2731 NCIH1869 CCLE Cell Line Gene CNV Profiles -1.0 -1.39728 SNU216 CCLE Cell Line Gene CNV Profiles 1.0 1.82939 CLPP_KO_GDS4791_537_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null Superior olivary complex, periolivary region Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.21015 NCIH2009 CCLE Cell Line Gene CNV Profiles -1.0 -1.72213 CREB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.9378 Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null 23132/87 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.06015 Retrosplenial area, dorsal part, layer 1 Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.29474 Prostate adenocarcinoma_PRAD_TCGA-KK-A7B4-01A-11R-A32O-07 TCGA Signatures of Differentially Expressed Genes for Tumors 1.0 null Prinzmetal angina DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.173 SP in midlateral extrastriate cortex (area 19) Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles 1.0 0.960185 SUIT-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.24841 primary visual cortex (striate cortex, area V1/17)_24 pcw_M_12288 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray -1.0 -1.48762 CardiacMyocytes BioGPS Human Cell Type and Tissue Gene Expression Profiles -1.0 -1.68487 Intercellular bridge COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.619 posterior (caudal) superior temporal cortex (area 22c)_8 yrs_M_12841 Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray 1.0 0.972431 Posterior polymorphous corneal dystrophy DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.755 MYF5 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.1416 paravermis of cerebellum Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles -1.0 -1.4169 HCC364 CCLE Cell Line Gene CNV Profiles -1.0 -1.34734 POLR2A_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EP300 ENCODE Transcription Factor Targets 1.0 null mantle zone of StrSe Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.35488 Corneal edema DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.341 ZNF8 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.4472 r3 part of spinal trigeminal sensory column, oral part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.21473 ventral entopeduncular nucleus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.1757 Sirt1_OE_GDS2658_140_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null ventral tier of thalamus Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles -1.0 -1.00889 pyramidal layer of taenia tecta Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 2.38785 Orbital area, medial part Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles 1.0 1.37009 RXRG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.9829