association	dataset	threshold value	standardized value
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
SOX14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.292
Liver disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.632
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4312
MLXIPL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2694
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6487
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7283
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6633
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0803
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0483
HEY1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4028
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3961
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9292
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.326
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	114.3
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.3382
TFEB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.177
Intrinsic component of mitochondrial inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.065
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.27
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6775
Autoimmune disease of gastrointestinal tract	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
Ghost	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.975
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9239
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0782
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1698
INA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.271
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4612
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4712
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.384
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.303
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4514
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4861
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8077
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
Liver cirrhosis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.632
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8382
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0432
Intrinsic component of mitochondrial membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.064
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.099
PMC11781671-ppat.1012897.s015.xlsx-Tab_S1-S1_Table_The_detailed_information_of_DEGs_in_Huh7_cells_post_MSX1_overexpression_MSX1	Rummagene Transcription Factor Associations 2026	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8287
Inflammatory bowel disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.422
v91	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.242
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2676
TFEC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8669
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1187
Primary immunodeficiency disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.477
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2584
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.769
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9084
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.398
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1737
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7889
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0485
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5058
Intestinal disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.422
Gastrointestinal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.422
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.2433
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.286
Myopia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.288
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1417
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0399
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.056
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3471
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9358
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3086
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.146
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.8158
Hepatobiliary disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.632
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7917
Loin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.631
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5933
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8282
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0147
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2112
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9449
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1671
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8122
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7481
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.3033
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.1392
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.422
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4461
Ulcerative colitis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
CLOCK	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0748
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.0109
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1319
Primary biliary cholangitis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.632
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6565
RNASEH2C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.37473
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6957
Peritubular contractile cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.725
ZNF416	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4783
Refractive error	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7572
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8118
Autoimmune disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
Premonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.816
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.705
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8572
GSE111061_1_v_0_tofacitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Purkinje layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.705
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0655
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6408
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7093
Amniocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1997
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8437
Psoas	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.732
ZNF93	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	188.078
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.7954
Colitis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.269
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.422
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3853
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0639
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3197
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8627
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4801
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.6902
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7428
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.626