association	dataset	threshold value	standardized value
Endoplasmic reticulum lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.429
LRP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57321
Congenital myopathy 4A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.212
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3655
SELENOV	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42788
TNFSF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01362
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
Small luteal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.513
Pontocerebellar hypoplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
SPZ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30441
REM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14913
GSE140997_10_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE114992,GSE114993_0_v_5_irf5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC8444148-NIHMS1529754-supplement-1529754_Tab_S2.xlsx-downregulated_in_ATF4OE-RNA-seq_of_C3_ATF4_OE_and_C3_neurons_ATF4	Rummagene Transcription Factor Associations 2026	1.0	null
PRR19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36473
GSE90710_1_v_0_med13_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE150134_1_v_0_fluorouracil_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Embryonic cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3588
GSE232218_1_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Type 2 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
GSE176008_8_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CREB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66442
FIGNL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94237
GSE103124_1_v_0_bmpr1a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5516
GSE210655_3_v_7_cisplatin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Autoimmune thyroiditis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-19q13_43_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
GSE142210_2_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE242521,GSE242522_0_v_1_mettl3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Ileocecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
GSE203308_9_v_10_brf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PLEKHF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61072
post-anaphase microtubule array	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.014
IPMK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38164
GSE188870,GSE188871_0_v_5_kat7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE168797_2_v_5_cannabidiol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PAQR6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11895
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.674
Selenium metabolism and selenoproteins	WikiPathways Pathways 2024	1.0	null
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11378
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1533
PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_DLX4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE231891_5_v_4_cdk8_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.84202
Hepatic cecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.876
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
Laticifer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.946
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7637
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.3173
GSE140997_4_v_6_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
FLCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1617
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1777
Tfcp2l1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	36.9124
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D9_vs_D15-Row_names_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
GSE92589_0_v_1_sirolimus_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE88819_6_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5235
PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5F-Up_H3K27me3_DPY30_KD-Unnamed_12_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE94814_1_v_0_reck_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00964
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8649
DCAF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26233
GSE242199_6_v_0_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1569
Postsynaptic endocytic zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.931
Uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.7
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
EPAS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9125
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.051
496100407_FWM_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.05246
Cecum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Thyroid gland disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
Toxic shock syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.115
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	9.0061
ADGRB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27346
NOB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9819
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.034
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.006
TLX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08731
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2234
TFDP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5685
IPO13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41605
ZNF385C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.283
GSE130401_4_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE88819_7_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
RUNX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9398
GSE213632_1_v_5_acod1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE189653,GSE203344_5_v_3_fluoxetine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
TNNT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12989
Sperm flagellum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.857
GSE88819_1_v_9_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
496100378_TCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.90082
TTF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28551
UQCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45831
GSE179002_2_v_6_caprin1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Thyroid nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.622
COX6B2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0474
TOMM70	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09764
DDX17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83316
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4996
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	52.5544
PPP1R12A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.20487
IHF-DNA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.871
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.706
GSE142210_3_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE203308_15_v_10_brf1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4281
TMEM139	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12929
DBN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2555
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6215
NOL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45961
NPPC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33311
ZNF263	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90474
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2848
GSE233679_12_v_2_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE214212_2_v_1_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7966
MTMR6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.23618
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.0506
GSE150134_1_v_0_scn5a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1	Rummagene Transcription Factor Associations 2026	1.0	null
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.31
GSE114992,GSE114993_0_v_3_irf5_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Pontocerebellar hypoplasia type 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.889
GSE233679_12_v_10_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Colon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Vermiform appendix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NT5DC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.87566
SNRPF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75442
GIGYF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18249
GSE102467_1_v_2_pazopanib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.119
GSE140576_0_v_2_plag1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6395
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.1754
PMC9296003-supp_gad.348982.121_Supplementary_Table_S1.xlsx-Partitions_EPC1-PHF1-FLAG-Unnamed_19_PHF1	Rummagene Transcription Factor Associations 2026	1.0	null
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7435
Choriocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.782
GSE129725_1_v_5_bmal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE176472_1_v_0_ifitm3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4724
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.165
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6825
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3911
ALAD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05428
AQR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38022
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.09
GSE129725_4_v_0_bmal1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
aminoacyl-tRNA synthetase multienzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.142
Glucose intolerance	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9935
KCTD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00241
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_1_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
TDRD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08232
GSE112763,GSE112767_4_v_1_dgcr8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Keshan disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.453
GOLT1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01998
LCMT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02206
GSE248045,GSE248046_6_v_5_runx1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
R2TP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.727
ZNHIT6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.2455
Rectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
COL4A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04006
AASDH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.31325
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3954
ZNF524	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5465
GSE143512,GSE143513_0_v_1_nr4a3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE132433,GSE132436_1_v_0_nr2f2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
GSE92589_3_v_1_sirolimus_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Thyroid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.798
Congenital muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.153
UPF3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86941
VPS13A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09674
Mastitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.472
GFI1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49263
CHST14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1486
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3315
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.173
PPIC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12433
ORC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06259
SETD6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22065
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.177
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
Rigid spine muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.754
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4999
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
Hoof	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
GSE156923_2_v_3_rbmx_human	RummaGEO Gene Perturbation Signatures	1.0	null
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
L8 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.812
CDK12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52768
CMTR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2007
Prostate adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.225
GSE164463_4_v_1_pax6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE88819_0_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
RNF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03688
GSE101239_3_v_2_valproic acid_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8476
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
Myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
KTC-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0976
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
ZNF552	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68176
GSE164874_5_v_0_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
PPOX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06926
MIER2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18246
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.418
LCTL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1463
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.246
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.313
DNAJA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17312
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
RRBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22024
pre-eclampsia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
SCO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65354
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0833
PMC12179525-mmc1.xlsx-Group_HNF4A_vs_Null_sign-Supplemental_Table_S1_Differentially_expressed_genes_in_HNF4A-transduced_cells_vs_Null_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
GSE164463_0_v_1_pax6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ERCC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5607
Ampulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.722
ZNF586	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35724
PARP11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22336
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3125
GSE88819_1_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MCM8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.64991
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
GLOD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.24674
PMC4387713-supp_gad.255984.114_Table_S4.xlsx-S4A-Down_Nanog_KD-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7773934-Table_1.XLSX-Table_S2-Supplementary_Table_2_TBX22_co-expressed_genes_detailed_results_TBX22	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9557
NPR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05483
496100362_FWM_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.57933
GSE220520_1_v_7_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
TPRX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42388
Fast muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.344
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.568
NPIPB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05781
GSE230354_0_v_1_rheb_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5617
PMC9911396-41467_2023_36178_MOESM11_ESM.xlsx-Sheet1-Genes_in_10kb_vicinity_of_ZBTB12_ChIP-seq_peaks_ZBTB12	Rummagene Transcription Factor Associations 2026	1.0	null
PMC8569982-41065_2021_205_MOESM1_ESM.xlsx-mono_THP1_a2b_tpm1-gene_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.005
GART	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13683
Sartorius	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
GSE142210_4_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
BNC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17384
MRTO4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94735
PTPMT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10789
GSE195559_6_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC6682991__F1	PFOCR Pathway Figure Associations 2024	1.0	null
Muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
GSE155695,GSE155696_1_v_0_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PMC9296003-supp_gad.348982.121_Supplementary_Table_S1.xlsx-PeakCall_EPC1-PHF1_FLAG_K562-ENSEMBL_PHF1	Rummagene Transcription Factor Associations 2026	1.0	null
Apicoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.56
Commensal bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.841
ANXA7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37924
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.228
GSE220520_3_v_7_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PAOX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08721
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7356
PMC7064337-elife-51373-supp1.xlsx-MTF2_targets_shCTR-List_of_2011_genes_marked_by_MTF2_ChIPseq_in_control_conditions_shCTR_MTF2	Rummagene Transcription Factor Associations 2026	1.0	null
Ventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.07
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8279
NDOR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.16463
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8097
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
GSE88819_3_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
IQSEC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03487
GSE88819_1_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4027
GSE207514,GSE207515_1_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	1.0	null
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.277
FAM181B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.20405
NDUFS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05849
Derlin-1 retrotranslocation complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.938
GSE183994_1_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6801
Bacterial nucleoid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.671
methionine-importing ABC transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.859
Diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.342
Seminiferous epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
Ritter's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.842
Thyroid epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.911
GSE171292_1_v_0_ehhadh_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
UQCC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77524
EIF2S2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.07128
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.671
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8981
E2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.7371
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.742
MAFG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25638
Formate dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.222
496100462_PCx_dementia_TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.8617
GSE140200_1_v_0_trim59_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100394_TCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.24453
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D9_vs_D15-gene_id_x_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
GSE113817_0_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PPP1R7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1081
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7264
VPS18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0807
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8817
ESCO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56186
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.428
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2419
GSE142210_11_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE142210_3_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
RPL23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64262
Small intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ORAI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28361
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
Dimethyl sulfoxide reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.952
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D9_vs_D15-gene_id_y_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
GOLM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02835
KLK13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3797
SPRTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75848
SF3A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47493
ESYT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10985
BBS10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15208
THEM5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44707
GSE215086_0_v_2_batf_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
UBE2G1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10812
PRB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15887
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_2_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9651
WSB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10886
GSE244940_0_v_1_edf1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_4_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
UQCRHL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32966
GSE102467_1_v_0_pazopanib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1881
ZFHX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12128
EIF5AL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66308
Staphyloenterotoxemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.997
EXOSC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32911
NT5C2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08473
PMC7064337-elife-51373-supp1.xlsx-EZH2_targets_shPHF19-List_of_2084_genes_marked_by_EZH2_ChIPseq_after_PHF19_KD_shPHF19_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Azoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
ZNF99	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09921
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4589
GSE180951_2_v_3_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Congenital myopathy 1B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.378
Colorectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NPB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81711
HS3ST3B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32982
GLIS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07428
LONP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.88067
496100592_FWM_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35583
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_3_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
GSE153064,GSE153065_1_v_2_hdac3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CACHD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11674
EFNA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24782
MAP3K10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11252
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1786
PMC9296003-supp_gad.348982.121_Supplementary_Table_S1.xlsx-Partitions_EPC1-PHF1-FLAG-Unnamed_20_PHF1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE113817_2_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
FAM169A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94132
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.013
GSE189653,GSE203344_4_v_3_fluoxetine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0527
GSE176008_4_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8403
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
MBD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11409
GSE226439,GSE226441_6_v_2_hnf4g_human	RummaGEO Gene Perturbation Signatures	1.0	null
GAK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.43037
GSE120200,GSE127269_1_v_2_asxl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZBTB47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33209
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7428
Nuclear senile cataract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
L3HYPDH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07577
NACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42651
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.333
GSE224547_1_v_0_cftr_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MAFG::NFE2L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.146
thioredoxin-disulfide reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.696
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9369
Renal proximal tubule epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.675
HEPA 1-6 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.885
496100622_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.76519
methionine-importing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.857
PROCA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27882
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
TFCP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9856
GSE216043_7_v_0_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE140997_4_v_3_nsun6_human	RummaGEO Gene Perturbation Signatures	1.0	null
GOLIM4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56799
GSE140997_2_v_1_nsun6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.178
Nutritional deficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.775
Gizzard	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.097
PMC3226433-1756-8935-4-20-S1.XLS-Table_S4_Myc_KD_gene_exp_change-Genes_down-regulated_in_Myc_KD_hESC_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Latex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.947
Sperm midpiece	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.15
GINS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.34276
RNASE8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10494
Pontocerebellar hypoplasia type 2D	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.121
INMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08577
IFI27L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.27846
ASMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80341
Intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.161
GSE178370_1_v_0_asgr1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Perirenal adipose tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.976
LSM11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55651
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0593
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-6.20024
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6576
KIF20A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53773
SMN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.90931
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0398
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.675
HYLS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2706
LRRC75A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42719
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0588
MFSD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.79335
Water vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.719
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4388
GSE142210_9_v_0_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
DNMBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55665
GSE262134_0_v_1_dnajc12_human	RummaGEO Gene Perturbation Signatures	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.581
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5002
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
GSE148692,GSE148695_5_v_4_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HES6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2057
496100470_HIP_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.59739
SUP-T1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.651
GSE207514,GSE207515_2_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE202434,GSE202438_13_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SKIC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15281
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.185
ICAM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00545
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.052
RBX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25988
H3C15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69251
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
ZNF709	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50795
PMC10111863-supp_gad.350269.122_Supplemental_Paun350269_FileS3.xlsx-A_ASCL1-regulated_DGE-geneID_ASCL1	Rummagene Transcription Factor Associations 2026	1.0	null
ATCAY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.25933
GSE62974_1_v_0_epas1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE200099_2_v_1_honokiol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2859
Mis6-Sim4 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.576
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8136
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
LYSP100-associated nuclear domain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.721
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1784
PMC9296003-supp_gad.348982.121_Supplementary_Table_S1.xlsx-PeakCall_EPC1-PHF1_FLAG_K562-SYMBOL_PHF1	Rummagene Transcription Factor Associations 2026	1.0	null
Selenium micronutrient network	WikiPathways Pathways 2024	1.0	null
Myometrial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
Glycine reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.101
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3179
TP53BP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31402
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
PMC3376834-emmm0004-0052-SD2.xlsx-NR2E3_Specific_1847-Unnamed_1_NR2E3	Rummagene Transcription Factor Associations 2026	1.0	null
GSE219195_1_v_2_rbm12_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC11923433-BLOOD_BLD-2024-025618-mmc2.xlsx-S3_Specific_genes_in_CEBPA-dm-Supplemental_Table_3_The_subtype-specific_enriched_marker_genes_in_CEBPA-dm_subtype_patients_CEBPA	Rummagene Transcription Factor Associations 2026	1.0	null
SLBP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12062
MOB3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33177
SUMO activating enzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.731
PMC8567280-EMBR-22-e53014-s008.xlsx-PC3_TIP5_bound_promoter-Unnamed_4_BAZ2A	Rummagene Transcription Factor Associations 2026	1.0	null
GSE225656_2_v_3_tsc2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE142210_11_v_7_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cul2-RING ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.247
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.162
Flagellum attachment zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.249