association	dataset	threshold value	standardized value
catecholaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366007
Habenular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.549
BRD-K73768826	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01278
Vocal fold	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
GSE79663_2_v_0_tcf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Ovariole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.554
mantle zone of r6Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.6949
Olfactory tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.086
EZH2_B cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Parkinson Disease	DisGeNET Gene-Disease Associations	1.0	null
complete neonatal lethality	MPO Gene-Phenotype Associations	1.0	null
Reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.598
Posterior parietal association areas, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04559
496100366_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.82831
postcentral gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235167
cingulate gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.621024
Pyloric mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.592
BRD-K86253182	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20293
10q11 21q11 23 copy number variation syndrome	WikiPathways Pathways 2024	1.0	null
Distal Amyotrophy	DisGeNET Gene-Disease Associations	1.0	null
Striate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.138
Diplopia	DisGeNET Gene-Phenotype Associations	1.0	null
MAX_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vagus nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18334
UM-UC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950013
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962608
BRD-K53388755	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.96512
MAX	ENCODE Transcription Factor Targets	1.0	null
muscular atrophy	MPO Gene-Phenotype Associations	1.0	null
H3K27me3_CD4+ CD25- Th Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
IKZF1	ChEA Transcription Factor Targets	1.0	null
Aortic body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.404
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19D-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SYT13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.8566
trypanosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.244345
JNK_KO_GDS3001_531_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
positive regulation of amine transport	GO Biological Process Annotations 2023	1.0	null
Inferior colliculus, dorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.61862
abnormal blood homeostasis	MPO Gene-Phenotype Associations	1.0	null
CRBN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40974
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.16307
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.900429
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.191719
H3K4me3_BE2C_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.09645
H3K4me3_Neurosphere Cultured Cells Cortex Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Mild cognitive impairment	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.018
Glans penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.892
CRCGN015_HEPG2_48H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.09155
H3K27me3_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Facial Paralysis	DisGeNET Gene-Disease Associations	1.0	null
GTF2F1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Autonomic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
Area postrema	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.962
huntington's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.282582
Photoreceptor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.64
hypotonia	MPO Gene-Phenotype Associations	1.0	null
SIMA	CCLE Cell Line Gene Expression Profiles	1.0	2.13759
PPFIA2	Pathway Commons Protein-Protein Interactions	1.0	null
fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.71639
gill filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297089
BRD-K24848743	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37804
Adrenal medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.128
H3K27me3_keratinocyte_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Hermansky-Pudlak syndrome 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
blood vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6721
UNC13B	Pathway Commons Protein-Protein Interactions	1.0	null
Mesocorticolimbic dopaminergic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.905
BRD-K78762661	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18929
Sinus node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.284
acetylcholine transmembrane transporter activity	GO Molecular Function Annotations 2023	1.0	null
dorsolateral part of Med	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01826
PMC5384880__F5	PFOCR Pathway Figure Associations 2023	1.0	null
ZNF213	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	106.623
hippocampus (hippocampal formation)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.54786
Sclera	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.984
NCIH929	CCLE Cell Line Gene CNV Profiles	-1.0	-1.93286
Middle temporal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.159
Dura mater	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.742
K562	BioGPS Cell Line Gene Expression Profiles	1.0	1.12158
TOV-21G	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4203
BRD-K61924932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47695
r3 part of the trigeminal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19741
attenuation	GeneRIF Biological Term Annotations	1.0	null
Presenile Dementia	DisGeNET Gene-Disease Associations	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.84307
Inner plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.647
C8orf33	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53003
H3K27me3_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Asymmetric synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.861
Crohn's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.132
Foot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.265
Trachea	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.503
Perineurium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.99
Weight Loss	CTD Gene-Disease Associations	1.0	1.22599
least	GeneRIF Biological Term Annotations	1.0	null
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12885
Posterior cingulate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.47
Extensor digitorum communis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.575
neuron spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.296972
BRD-K90736603	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.32785
BRD-K15259924	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08586
CJM	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48485
chromaffin cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.413532
NCIH1648	CCLE Cell Line Gene CNV Profiles	-1.0	-2.64911
Mitral cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.989
H3K4me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.763
KLF14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	121.078
pheochromocytoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.256456
JUND	ENCODE Transcription Factor Targets	1.0	null
PPFIA3	Pathway Commons Protein-Protein Interactions	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH2009	DepMap CRISPR Gene Dependency	1.0	2.04397
BRD-K08899466	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02221
sirnamediated	GeneRIF Biological Term Annotations	1.0	null
BRD-K09078201	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28379
GSE114685_1_v_0_grin2b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Sudden infant death syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.425
PMC12775252-18_2025_5991_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_2_Up-_and_down-regulated_genes_in_TCF7L2-depleted_EVT_compared_to_control_EVT_TCF7L2	Rummagene Transcription Factor Associations 2026	1.0	null
POU5F1	ChEA Transcription Factor Targets	1.0	null
PMC5384880__F8	PFOCR Pathway Figure Associations 2024	1.0	null
exfoliation syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.323002
Neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.631
Electric organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.877
neurofilament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.543587
Eeg With Polyspike Wave Complexes	DisGeNET Gene-Phenotype Associations	1.0	null
H3K4me2_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Dendritic tree	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.579
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table4_gnomAD_EAS_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
striatum_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21798
Varicosity	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.224
15901920-Table3	GeneSigDB Published Gene Signatures	1.0	null
l45	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.688
NCIH526	CCLE Cell Line Gene Expression Profiles	1.0	1.52563
Abdominal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.031
Autonomic nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
behavior/neurological phenotype	MPO Gene-Phenotype Associations	1.0	null
olfactory tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
HCC1359	CCLE Cell Line Gene CNV Profiles	1.0	2.03192
external female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320591
KE-37-MN32_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.948913
Gastric corpus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.68
liminal part of r3 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00964
sympathetic chain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.31469
tegmentum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.648938
nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.696581
habenular trigone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.851266
Central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
temporotympanic muscle trigeminal motor cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20961
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.26385
BRD-K72565671	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14154
Emg: Impaired Neuromuscular Transmission	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K77591784	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.40321
Cul4A-RING E3 ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.404
Supraoptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.24334
Neuron_Cardiac neural crest_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
Medial temporal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.305
Bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.524
Medial longitudinal fasciculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.664
SUZ12-20075857-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.36858
H3K27me3_bronchial epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
aphthous stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.347879
Fast twitch muscle fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.786
BRD-K24479270	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59782
epilepsy syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.055735
METTL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44323
BRD-K38450726	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.21348
GSE130401_4_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
G protein-coupled receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.437
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MG-01A-12R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
urophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379875
Perturb_2265_KO_RACK7_SRP223446	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	17.2441
Cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.232
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.638
BRD-K61039403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03851
r9 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.14262
Disease of anatomical entity	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Dorsal aorta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.947
REST	ChEA Transcription Factor Targets	1.0	null
demonstrate	GeneRIF Biological Term Annotations	1.0	null
Nephronophthisis 13	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
organelle membrane	GO Cellular Component Annotations 2015	1.0	null
IKZF1-21737484-HCT116-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Dermal dendritic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.318
CHD7_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Striatal neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.758
CA9-22	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
lines	GeneRIF Biological Term Annotations	1.0	null
abnormal neurotransmitter level	MPO Gene-Phenotype Associations	1.0	null
Main axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.985
H3K9me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-A03121430	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67973
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MEX3D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80532
TFAP4::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.1934
primary visual cortex (striate cortex, area V1/17)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.03732
CHP126	CCLE Cell Line Gene Expression Profiles	1.0	2.96296
H3K27me3_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
monoamine transmembrane transporter activity	GO Molecular Function Annotations 2023	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.881627
FNDC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83312
hsa-miR-4492	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
BRD-K06926365	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13196
amygdala	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.596058
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.554
membrane	GO Cellular Component Annotations 2015	1.0	null
Tinnitus	DisGeNET Gene-Phenotype Associations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-O2-A52V-01A-31R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN011_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8692
Chromosome 16p12.2-p11.2 deletion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
infundibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364886
intermediate stratum of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20544
hippocampus (hippocampal formation)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.916547
H3K4me3_fibroblast of pedal digit skin_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Status Epilepticus	DisGeNET Gene-Disease Associations	1.0	null
clathrin adaptor complex	GO Cellular Component Annotations 2025	1.0	null
IMR32	DepMap CRISPR Gene Dependency	1.0	2.05457
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.741
PMC3851989__F3	PFOCR Pathway Figure Associations 2023	1.0	null
Horner's syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187357
BRD-K59960811	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19124
HCC2185	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.0316
Chemoreceptor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.429
Abnormal Behavior	DisGeNET Gene-Phenotype Associations	1.0	null
Metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.241
Ribbon synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.414
CHD1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3426-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.1342
C22orf23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.73006
acetylcholine transport	GO Biological Process Annotations 2015	1.0	null
abnormal neuron number	MPO Gene-Phenotype Associations	1.0	null
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H889	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.551
Calcium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.2
clitoris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.184685
protein complex involved in cell adhesion	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.065452
integrin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.066491
deutocerebrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314409
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.06134
JARID2-20075857-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE156505_1_v_0_dis3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
regulation of neurotransmitter levels	GO Biological Process Annotations 2015	1.0	null
CRCGN013_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.36052
PMC11772884-41421_2024_747_MOESM6_ESM.xlsx-8_DEGs_RUNX1-OE_vs_control-Gene_Symbol_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
cholinergic	GeneRIF Biological Term Annotations	1.0	null
H3K4me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.025
Slow muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.232
amygdaloid complex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04248
Pilus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.285
deletions	GeneRIF Biological Term Annotations	1.0	null
inferolateral temporal cortex (area TEv, area 20)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.955118
BRD-K91905575	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.85161
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01536	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.08867
Cerebral Amyloid Angiopathy	HuGE Navigator Gene-Phenotype Associations	1.0	null
Neuron projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.119
striatum_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21304
RAD21	ENCODE Transcription Factor Targets	1.0	null
Motoneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.837
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15043
impaired coordination	MPO Gene-Phenotype Associations	1.0	null
Bulbourethral gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.054
U-2-OS	GDSC Cell Line Gene Expression Profiles	-1.0	-1.67657
none	GeneRIF Biological Term Annotations	1.0	null
vagina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.175702
JL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49705
Somatodendritic compartment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.673
c bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.626483
BRD-A02501536	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3158
BRD-K93457574	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36286
BRD-K41287744	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27409
Prefrontal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.004
Medullary reticular nucleus, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07562
EBC1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.58756
SKHEP1	CCLE Cell Line Gene Expression Profiles	1.0	2.25847
H3K9me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
pcgf2_17452456_medulloblastoma_lof_human_gpl570_gds2724	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.117061
Nigrostriatal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.939
Muscle cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.119
BRD-K21051792	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15428
Cerebral ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.381
Cerebellar mossy fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.601
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.25714
Neurotransmitter receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.109
intermediate stratum of r5Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.43368
STAT3-24763339-IMN-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Medial habenular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.493
transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.31332
Mood disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.236
abnormal motor coordination/ balance	MPO Gene-Phenotype Associations	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.76174
Archenteron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.906
CTCF_SK-N-SH_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35557
PKN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83714
GSE131887_1_v_0_doxycycline_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Axon cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.255
Junctional membrane complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.518
BRD-K05002317	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01733
abnormal motor neuron innervation pattern	MPO Gene-Phenotype Associations	1.0	null
Trigeminal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.163
Amyloid plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.533
synapse part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.83135
BT483	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.27627
Lateral nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.951
Movement disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.163
Axon terminus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
BRD-K10871135	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04616
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	39.5986
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.057
SP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	228.829
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
Motor neuron_Brain_Human	CellMarker Gene-Cell Type Associations	1.0	null
bounding membrane of organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.073662
H3K9me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Temporal lobe epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.252
CTCFL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	110.976
bounding membrane of organelle	GO Cellular Component Annotations 2015	1.0	null
SHSYSY+RA	BioGPS Cell Line Gene Expression Profiles	1.0	1.67882
WC-16-IR43_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.798944
Choking Episodes	DisGeNET Gene-Phenotype Associations	1.0	null
SW756	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EP300_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acetylcholine	GeneRIF Biological Term Annotations	1.0	null
movement disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.405305
KLF4	ChEA Transcription Factor Targets	1.0	null
transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.864447
lethality during fetal growth through weaning	MPO Gene-Phenotype Associations	1.0	null
Neuropathy	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071746
QA-07-KC40_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.243472
Axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.883
TOMM6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61215
Central Hypotonia	DisGeNET Gene-Phenotype Associations	1.0	null
Cerebral gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.948
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053363
BRD-K96096022	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23678
Inferior frontal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.919
H4K20me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.985
serotonin uptake	GO Biological Process Annotations 2023	1.0	null
Limbic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.633
Connexin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.715
hsa-miR-4689	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
BRD-K96652989	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35528
WM-115	GDSC Cell Line Gene Expression Profiles	-1.0	-1.69014
muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.13634
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.667
H3K27me3_cardiac mesoderm_hg19_8	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K34234678	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89723
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08781
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.84196
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.958
closed	GeneRIF Biological Term Annotations	1.0	null
cerebellum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.54285
colorectum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.491791
LRFN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56189
posteromedial visual area, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.86593
BRD-K36170758	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73971
oculomotor nucleus, main part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.48465
trans-Golgi network transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
H3K27me3_BJ_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MAX_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Encephalomyelitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
BRD-K33217094	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52769
EZH2	ChEA Transcription Factor Targets	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LD-01A-12R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Occipital lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.918
intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.696581
common penile artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.378748
PMC6987220-41467_2020_14312_MOESM5_ESM.xlsx-P53_Spheres-8_names_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
colon descendens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.755364
TEAD4_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
progressive supranuclear palsy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.658026
Toe-Walking Gait	DisGeNET Gene-Phenotype Associations	1.0	null
H3K4me1_Muscle Satellite Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Pontine nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.319
BRD-K59185421	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.24634
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
TRIM44	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47735
Polyhydramnios	DisGeNET Gene-Phenotype Associations	1.0	null
Hyperekplexia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
severe	GeneRIF Biological Term Annotations	1.0	null
Bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.868
Brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.817
Meibomian gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.575
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.527534
Leading edge membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.837
Presynaptic active zone membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
BRD-K73286847	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11004
immunoreactivity	GeneRIF Biological Term Annotations	1.0	null
hippocampus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.48458
L-type voltage-gated calcium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.727
GSE159728,GSE159730_0_v_1_prdm16_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Lateral geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.771
Congenital myasthenic syndrome 21	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.611
Mesonephron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.925
GSE138863_3_v_0_disulfiram_human	RummaGEO Drug Perturbation Signatures	1.0	null
lateonset	GeneRIF Biological Term Annotations	1.0	null
BRD-K40251180	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03023
cerebellar cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.35905
shell part of the anterobasal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22695
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08095
Endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
affinity	GeneRIF Biological Term Annotations	1.0	null
pervasive developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.123223
Pedal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.123
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105775
superficial stratum of r5BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36288
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6481-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8190596-mmc2.xlsx-ETV6_mut-ETV6_mut_ETV6	Rummagene Transcription Factor Associations 2026	1.0	null
Striated muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.564
Laterodorsal tegmental nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.36
glycine-tRNA ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.75
GSE140576_0_v_2_plag1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
substantia innominata	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.63274
n18tg2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.569222
HDAC6_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TMSB4Y	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88702
Clumsiness - Motor Delay	DisGeNET Gene-Disease Associations	1.0	null
HSOS1	DepMap CRISPR Gene Dependency	1.0	2.05517
plant vessel	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370121
BRD-K68683482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06038
Dorsal nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.918
SNU-175	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	121.483
GSE242290_3_v_8_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
Neoplasms	CTD Gene-Disease Associations	1.0	1.23137
closely	GeneRIF Biological Term Annotations	1.0	null
Type 2 diabetes mellitus_Muscle tissue_GSE12643	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.52915
Axon terminus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.929
BRD-K12097074	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.681
Colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.333
BRD-K34761198	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34496
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29466
neuroblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
BRD-K26431593	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92864
Bulbar Palsy	DisGeNET Gene-Disease Associations	1.0	null
BRD-K52414345	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0634
E2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.3808
abnormal exercise endurance	MPO Gene-Phenotype Associations	1.0	null
POLR2AphosphoS5_G1E_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40105
BRD-K45563993	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52051
BRD-A92729194	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32394
Neuron projection terminus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.162
abnormal physical strength	MPO Gene-Phenotype Associations	1.0	null
Tongue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.288
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.45194
metabolic	Phosphosite Textmining Biological Term Annotations	1.0	null
BRD-K84593579	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11158
clathrin coat of coated pit	GO Cellular Component Annotations 2023	1.0	null
Peripheral nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.596
vacht	GeneRIF Biological Term Annotations	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.365633
Mycolate outer membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.711
SUZ12-27294783-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GSE126345_9_v_10_hcrt_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KPNRTBM1	CCLE Cell Line Gene Expression Profiles	1.0	1.5983
ChIP_H3K27me3_18600261_mouseWholeBrain	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
cytoplasmic vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
[123I]IODOBENZOVESAMICOL	DGIdb Drug Targets 2026	1.0	13.233
Motor neuron disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.216
Telodendria	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.666
ZNF530	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.7125
496100417_HIP_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.93331
BRD-K61092554	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14252
abnormal survival	MPO Gene-Phenotype Associations	1.0	null
VSX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32345
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
hippocampus (hippocampal formation)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.74329
PMC4540202-cddis2014370x2.xls-Sheet1-Table_S2_MEIS2-responsive_genes_MEIS2	Rummagene Transcription Factor Associations 2026	1.0	null
QA-81-IM40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.22276
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.992778
BRD-K04877855	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2027
GSE232836_2_v_6_morphine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
H3K4me1_cerebellum_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
trigeminal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.431077
Low Set Ears	DisGeNET Gene-Disease Associations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:D15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.10161
GSE153871_1_v_2_cytarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
medial	GeneRIF Biological Term Annotations	1.0	null
BRD-K68705041	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47985
vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.292079
Gastric fundus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.902
Proboscis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.936
H3K4me2_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
blood-brain barrier	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.354
C32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79833
larynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.113046
Optic lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.044
GSE210101,GSE210114_6_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
organelle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ventrolateral prefrontal cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.2789
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.754
r9 (gustatory) part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46588
HT29	BioGPS Cell Line Gene Expression Profiles	1.0	1.32622
BRD-K37961770	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02407
Migraine	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.008
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.42664
H3K4me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Rett Syndrome	DisGeNET Gene-Disease Associations	1.0	null
dentate gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.461078
BRD-K84800135	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34216
represents	GeneRIF Biological Term Annotations	1.0	null
sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.944366
BRD-K62888534	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47231
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81N-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferior olivary nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.238108
Irritable bowel syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.04
habenular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.851266
H3K4me1_Brain Mid Frontal Lobe	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
clathrin-coated endocytic vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Subpallium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.058
Cochlear duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.519
Neuron projection branch point	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.795
Mesolimbic dopaminergic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.578
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUM-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Narrow Jaw	DisGeNET Gene-Phenotype Associations	1.0	null
COR-L47	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.86112
neurosecretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.312957
Perturb_9742_KO_Fxr_SRP241086	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.26287
Intestinal wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
single-organism localization	GO Biological Process Annotations 2015	1.0	null
BRD-K27881453	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63065
Stria terminalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
Stinger	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.566
developmental disorder of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.253479
AP-1 adaptor complex	GO Cellular Component Annotations 2023	1.0	null
BRD-K28483134	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.77946
Autistic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.606
UMUC5	DepMap CRISPR Gene Dependency	1.0	5.57886
Circumventricular organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.371
r10 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.45239
plasma	Phosphosite Textmining Biological Term Annotations	1.0	null
Vomeronasal organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.901
PMC9882185-media-4.xlsx-Neuron_KD-ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
TEAD1	JASPAR Predicted Transcription Factor Targets	1.0	null
Pupa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.633
vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Gill filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.192
bipolar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.425344
GSE101336_1_v_2_decitabine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.423
Infertility, Female	CTD Gene-Disease Associations	1.0	1.37619
Longissimus capitis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.048
SERPINB9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19324
BRD-K18296708	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01491
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6937-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IST-SL1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
LAN-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.257
trafficking	Phosphosite Textmining Biological Term Annotations	1.0	null
nci-h82 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.745451
GSE205976,GSE205978_1_v_4_cep83_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Fast muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.303
help	GeneRIF Biological Term Annotations	1.0	null
SOX3-22085726-NPCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
acetylcholine uptake	GO Biological Process Annotations 2025	1.0	null
r9 portion of vagal motor nucleus (postmigratory)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.97279
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.980217
taste bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.424581
Lung adenocarcinoma_LUAD_TCGA-50-5935-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.07785
Sc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.514
OC-314	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K04791118	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0168
CRCGN015_HEPG2_48H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.98958
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267446
HDAC2	ENCODE Transcription Factor Targets	1.0	null
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.23975
Intercostal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.799
Bipolar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.682
Pleural ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.945
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.536229
multiple system atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.518034
CAL-39	GDSC Cell Line Gene Expression Profiles	1.0	1.54288
interneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37682
integral component of synaptic vesicle membrane	SynGO Synaptic Gene Annotations	1.0	null
increased vertical activity	MGI Mouse Phenotype Associations 2023	1.0	null
NCI-H441	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Muscle Fiber Atrophy	DisGeNET Gene-Phenotype Associations	1.0	null
mantle zone of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.88052
anion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
abducens motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42631
BRD-K62707745	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3683
GSE139966_4_v_0_figla_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05762
Compound eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
intermediate stratum of r1Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00085
lateral ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.962472
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.22759
KLF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	152.684
Difficulty Walking	DisGeNET Gene-Phenotype Associations	1.0	null
Focal epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
Lateral ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.842
synaptic vesicle neurotransmitter loading	SynGO Synaptic Gene Annotations	1.0	null
BRD-K66865641	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.98576
Outer hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.436
IMR32	CCLE Cell Line Gene Expression Profiles	1.0	1.82364
DU-145	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Alzheimer's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.566
Human - Fetal Development - L1 - Visceral neurons	HuBMAP Azimuth Cell Type Annotations	1.0	null
CRCGN014_HEPG2_3H:M21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.5644
MEG01	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63938
Field CA2, stratum radiatum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02596
tauopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45529
KLF4-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
Superior frontal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.074
BRD-A29371732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.29456
Thymus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.881614
Ankle joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.717
heart	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.530298
Nasal Voice	DisGeNET Gene-Phenotype Associations	1.0	null
GSE116492,GSE116495_3_v_1_stag2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NS-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.814
WDR89	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19429
Lateral dorsal nucleus of thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09049
Myasthenias	DisGeNET Gene-Disease Associations	1.0	null
BRD-K61661017	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05276
BRD-K11506071	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53685
Sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.217
Lewy body dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.035
Neuroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.574
Nucleus of the solitary tract, commissural part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47825
Field CA3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07045
BRD-K69528787	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.44965
Caudate putamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.066
Pulmonary vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.767
Habenular trigone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.549
Dorsal raphe nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.519
symmetric synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.470005
abnormal muscle fiber morphology	MPO Gene-Phenotype Associations	1.0	null
Terminal bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.691
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A708-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Presynaptic cytosol	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.664
HCT-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K65250438	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46923
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.0808
Focal dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.418
MYC	ENCODE Transcription Factor Targets	1.0	null
Gracilis muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.613
NALM-6	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CORL105	DepMap CRISPR Gene Dependency	1.0	3.31968
Congenital myasthenic syndrome	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Nucleus of the solitary tract	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01709
tail	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.630314
Sensory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.321
fatigue	MPO Gene-Phenotype Associations	1.0	null
trans-Golgi network transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Accessory olfactory bulb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
GSE145915_0_v_2_pcm1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
striatum_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.891457
cingulate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.553683
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.73927
nsc-34 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.60893
SHSY5Y	CCLE Cell Line Gene Expression Profiles	1.0	1.41244
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A7DR-01A-21R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
neocortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.426109
REST_U-87 MG_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
following	GeneRIF Biological Term Annotations	1.0	null
Pharyngeal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.402
Modiolus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.088
intellectual	GeneRIF Biological Term Annotations	1.0	null
perinatal lethality	MPO Gene-Phenotype Associations	1.0	null
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	2.2277
H3K9ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
post-traumatic stress disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.301
duplications	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_HEPG2_48H:J16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.89771
signaling	GO Biological Process Annotations 2015	1.0	null
intracranial arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.320454
Olfactory receptor neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.545
GSE101336_1_v_3_decitabine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Lymphoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.446
BRD-K54660148	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92572
Neuroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
T-tubule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.058
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.466
EZH2-27304074-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K58248556	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01678
Neurotransmitter Release Cycle	Reactome Pathways 2014	1.0	null
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.359292
GSE210101,GSE210114_8_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Obstructive sleep apnea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.158
Sarcoma_SARC_TCGA-WK-A8XT-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CHD2	ENCODE Transcription Factor Targets	1.0	null
496100370_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.03777
caudate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
H3K27me3_cardiac mesoderm_hg19_7	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNRPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.3201
JHH-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13643
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
NCIH446	CCLE Cell Line Gene Expression Profiles	1.0	1.4297
upstream	GeneRIF Biological Term Annotations	1.0	null
Rectum adenocarcinoma_READ_TCGA-DY-A1DD-01A-21R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
chemical synaptic transmission	GO Biological Process Annotations 2025	1.0	null
CRCGN014_HEPG2_24H:C01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.25544
sudden infant death syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.18151
CRCGN013_HEPG2_24H:N02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.18381
Tobacco Use Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
Fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.338
Fibre tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.523
mediodorsal nucleus of thalamus_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.871155
BRD-K40452322	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.66686
positive regulation of cellular component organization	GO Biological Process Annotations 2023	1.0	null
TAS2R5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88722
PMC10809117-mmc1.pdf-2-NR1H4_NR1H4	Rummagene Transcription Factor Associations 2026	1.0	null
ChIP_RNF2_22325148	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Dendritic shaft	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.499
BRD-K54141134	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17388
cns cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.325335
BRD-K22485649	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05294
CRCGN017_MCF10A.WT.HP_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1871
GSE242290_3_v_6_glutathione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235748
PMC6899527__F3	PFOCR Pathway Figure Associations 2023	1.0	null
cellular process	GO Biological Process Annotations 2015	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49395
neuronal cell body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.11225
H3K4me1_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K27me3_Brain Hippocampus Middle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
dorsal cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.44048
Ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.746
striatum_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.16031
Nicotine	CTD Gene-Chemical Interactions	1.0	null
acetate ester transport	GO Biological Process Annotations 2015	1.0	null
Diarrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.0
GSE242290_3_v_4_glutathione_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE138633_2_v_0_bag3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
Inner ear vestibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.881
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19881
Head muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.717
superior cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.793126
Eye disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
Respiratory Insufficiency	DisGeNET Gene-Phenotype Associations	1.0	null
Nerve trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.704
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.943485
limb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058949
GSE149035_7_v_5_hepacam_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE210101,GSE210114_1_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Longitudinal smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.242
Motor nucleus of trigeminal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19584
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36178
CHD7	ENCODE Transcription Factor Targets	1.0	null
GSE120200,GSE127269_1_v_2_asxl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
abnormal gas homeostasis	MPO Gene-Phenotype Associations	1.0	null
SFRP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34031
MOLM6	CCLE Cell Line Gene CNV Profiles	1.0	1.34986
GPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80735
Arcuate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
Entorhinal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.767
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	1.41847
lhx8	GeneRIF Biological Term Annotations	1.0	null
EZH2_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Congenital myasthenic syndrome 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.454
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864611
lateral part of r5B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23485
Vas deferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.22
KNS81	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46394
SNU-475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21701
REM sleep behavior disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.587
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962736
BRD-K31325635	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43767
BRD-K36539857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.68004
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Rhinencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.705
Perikaryon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.75
hsa-miR-4652-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.858
E2F6	JASPAR Predicted Transcription Factor Targets	1.0	null
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.936
THP1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35883
KDM2B-26808549-CHIP-SEQ-SIL-ALL-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K22970494	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79014
integral component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.141075
positive regulation of neuromuscular junction development	GO Biological Process Annotations 2025	1.0	null
Synaptic vesicle cycle	KEGG Pathways 2026	1.0	null
CML-T1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K33236055	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10047
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.673
Trigeminal nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.41
Internal capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.097
THBD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50735
clathrin-coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
RCH-ACV	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TM31	CCLE Cell Line Gene CNV Profiles	1.0	2.79231
pterigoid muscle trigeminal motor cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.7564
Polyadic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.02
BRD-K51196703	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.9146
Arterial blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.196
Synaptic Vesicle Pathway(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Clathrin coat of endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05163
Spinal muscular atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.193
hsa-miR-3155b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
adrenal gland cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.212121
BRD-K70315531	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95524
BEX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.00846
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.867043
axon terminus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.5531
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056331
BRD-K70895130	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31568
BRD-A15330900	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60843
hypoglossal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.889678
Transmission across Chemical Synapses	Reactome Pathways 2014	1.0	null
TEAD4	ENCODE Transcription Factor Targets	1.0	null
LAMTOR4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04416
H3K27me3_cerebellum_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UDSCC2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K93335719	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33843
positive regulation of neuromuscular junction development	GO Biological Process Annotations 2023	1.0	null
SARS-CoV MA15_Day1-PFU-10^5_None_GSE50000	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.30619
EZH2-18974828-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K52643239	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09919
vesamicol	Guide to Pharmacology Chemical Ligands of Receptors	1.0	null
nucleus of the central acoustic tract	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31302
pcmc	GeneRIF Biological Term Annotations	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
G122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19993
PMC3789264__F7	PFOCR Pathway Figure Associations 2024	1.0	null
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.864351
H3K27me3_mammary epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
PMC8481886-Table_2.xlsx-A_subsets-AF_MSC_UdRPC_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
PUR1	MotifMap Predicted Transcription Factor Targets	1.0	null
BRD-K45112293	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23341
abnormal vertebral column morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal nervous system morphology	MPO Gene-Phenotype Associations	1.0	null
GB1	CCLE Cell Line Gene CNV Profiles	1.0	1.45988
Perirhinal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.99
Corpus striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.572
VPS35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21934
bounding membrane of organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.005967
vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.245685
EZH2_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.266
BRD-K51364219	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47196
Congenital myasthenic syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.315
CRCGN009_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	10.0
Inferior olivary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.44277
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.93912
UMC-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.07728
hippocampus (hippocampal formation)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.30186
neuropeptide-S nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20262
Sarcoma_SARC_TCGA-MJ-A850-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
enteric nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.670471
NCI-H1155	GDSC Cell Line Gene Expression Profiles	1.0	2.10921
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RD-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Toxic encephalopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.771
SP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	213.228
glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.317679
BRD-K38073091	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49129
tgp52	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.564
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
AP-2 adaptor complex	GO Cellular Component Annotations 2025	1.0	null
TP63	ChEA Transcription Factor Targets	1.0	null
BOK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95923
CRCGN017_MCF10A.TP53.M_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.23615
regulation of acetylcholine secretion, neurotransmission	GO Biological Process Annotations 2023	1.0	null
Medial vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.781
caudate putamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.367876
Neuroepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.287
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.251
Paramedian lobule	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08047
Basal dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.625
Ciliary muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.356
Ventral posterior nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.631
H3K4me3_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Tail	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.853
periventricular stratum of r5BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42595
curves	GeneRIF Biological Term Annotations	1.0	null
GSE100217_1_v_3_ethanol_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.736
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12885
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.15096
H3K27me3_NT2-D1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERFGC1B	DepMap CRISPR Gene Dependency	1.0	2.73197
GSE224547_1_v_0_cftr_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN010_HEPG2_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15346
BRD-K68314790	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13667
TRAM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69222
hsa-miR-4498	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
BRD-K02419152	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29159
establishment of localization in cell	GO Biological Process Annotations 2015	1.0	null
BRD-K75657700	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.28106
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CPLX1	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal skeletal muscle size	MPO Gene-Phenotype Associations	1.0	null
BRD-K18573205	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17797
CRCGN016_MCF10A.WT.HP_24H:C10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0244
monoamine transmembrane transporter activity	GO Molecular Function Annotations 2025	1.0	null
Infundibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.309
PCOLCE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52266
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K09975370	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.65253
parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.080226
ZFP42	ChEA Transcription Factor Targets	1.0	null
Forelimb muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.058
CRCGN016_MCF10A.TP53.M_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.22493
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A1PX-01A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN008_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.3487
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Inflammation	CTD Gene-Disease Associations	1.0	1.49457
anion transport	GO Biological Process Annotations 2015	1.0	null
biological regulation	GO Biological Process Annotations 2015	1.0	null
BRD-K89638177	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51767
AA-22-UI44_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.30293
Intermediate filament cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.088
GSE131161_3_v_0_rarres1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.414
Synaptic vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.2
GSE200673,GSE200691_2_v_3_hmga2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
sub-surface cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.308
Demyelinating disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.281
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.185
dysentery	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.582384
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A4P6-01A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.73778
Alcohol use disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
Dysphonia	DisGeNET Gene-Phenotype Associations	1.0	null
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Proximal Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
neurohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290295
BRD-K03884263	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.43363
Smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.0
Lamellar body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.736
H3K27me3_cardiac mesoderm_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Occipital pole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.751
BRD-K04731905	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17488
Subesophageal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.166
JUND_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Li	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.229
SAP30_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Choreatic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
iris	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235748
Axon	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
BRD-K27849471	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78845
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.554
Glia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.164
HELA	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.64083
Huntington's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.862
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A77P-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Glomerular layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.174
POLR2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28638
Vascular dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.554
Lateral posterior nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.001
alzheimer's disease	GAD Gene-Disease Associations	1.0	null
GSE239541_5_v_7_bmal1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
r9 part of dorsal parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08078
vasculature	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.539793
lateral ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393819
Synapse	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
abnormal seizure response to inducing agent	MPO Gene-Phenotype Associations	1.0	null
GSE216273,GSE216292_14_v_6_palbociclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
REEP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.93881
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.266
Carotid sinus nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.512
OVK18	CCLE Cell Line Gene CNV Profiles	1.0	1.46149
neuronal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.523588
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0381
Anxiety disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.71
CRCGN015_HEPG2_48H:G04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.72265
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6131-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CEBPB	ENCODE Transcription Factor Targets	1.0	null
Attention deficit hyperactivity disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.592
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A1EK-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Memory Disorders	CTD Gene-Disease Associations	1.0	1.01701
Bronchial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4169-01A-02R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DOK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.48521
AA-39-BD24_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.240198
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.51638
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02657
HS-SULTAN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27931
Synaptic ribbon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.047
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15675
SA1-27219007-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
small intestine	HPA Tissue Protein Expression Profiles	1.0	1.16804
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.173057
reversed	GeneRIF Biological Term Annotations	1.0	null
reproducible	GeneRIF Biological Term Annotations	1.0	null
abdominal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.56284
superficial stratum of r6Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.00402
amino-acid-substitution	Phosphosite Textmining Biological Term Annotations	1.0	null
PMC2883591-pgen.1000979.s003.xls-NRSF_GENELISTS_WitOut_GeneSig_g-Supplemental_Table_3_REST	Rummagene Transcription Factor Associations 2026	1.0	null
A431	COSMIC Cell Line Gene Mutation Profiles	1.0	null
intermediate stratum of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16477
KASUMI1	CCLE Cell Line Gene CNV Profiles	1.0	1.40224
Copula pyramidis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.18595
chemical synaptic transmission	GO Biological Process Annotations 2023	1.0	null
Sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.603
PALS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.56303
Congenital Dysplasia Of The Hip	DisGeNET Gene-Disease Associations	1.0	null
Craniofacial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
clathrin coat of trans-Golgi network vesicle	GO Cellular Component Annotations 2023	1.0	null
CAL-120	GDSC Cell Line Gene Expression Profiles	1.0	1.90054
peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.069777
regulation of acetylcholine secretion, neurotransmission	GO Biological Process Annotations 2025	1.0	null
retina	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.482817
Peripheral ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.531
BRD-K98749544	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51522
Recurrent Respiratory Infections	DisGeNET Gene-Phenotype Associations	1.0	null
Neuronal dense core vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.627
D542MG	DepMap CRISPR Gene Dependency	1.0	2.07454
Congenital myasthenic syndrome	ClinVar Gene-Phenotype Associations 2025	1.0	null
skeletal muscle fiber atrophy	MPO Gene-Phenotype Associations	1.0	null
Coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
BACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.79532
Major facilitator superfamily	InterPro Predicted Protein Domain Annotations	1.0	null
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.33
Inferior cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.93
GSE152032_3_v_2_s1pr4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
JARID2-20075857-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
globus pallidus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.547326
Ebolavirus(EBOV)_3day_Splenocytes_19683682_GSE17509	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.6767
Hippocampal mossy fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.508
MYCN-27167114-CHIP-SEQ-NEUROBLASTOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.719015
Inferior temporal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.184
CRCGN009_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.07445
HCC1428	CCLE Cell Line Gene CNV Profiles	1.0	1.83476
GABA receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.056
RBBP5	ENCODE Transcription Factor Targets	1.0	null
exon	GeneRIF Biological Term Annotations	1.0	null
Ophthalmoplegia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.521
GR	MotifMap Predicted Transcription Factor Targets	1.0	null
Ionotropic glutamate receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.806
trachea	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.135411
ketorolac-3110	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
acetyltransferase	GeneRIF Biological Term Annotations	1.0	null
rhombomere 10	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42668
Autoimmune disease of gastrointestinal tract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
NCI-H82 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.862
contractures, pterygia, and spondylocarpotarsal fusion syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.605
BRD-K92059157	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27242
HDAC6	ENCODE Transcription Factor Targets	1.0	null
seminal vesicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.307167
enhanced	GeneRIF Biological Term Annotations	1.0	null
iris sphincter muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293508
hsa-miR-762	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Dense body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.662
GSE198228,GSE198245_0_v_2_apoe_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC10891378-tau-13-01-91-supplementary.pdf-116-ZNF683_ZNF683	Rummagene Transcription Factor Associations 2026	1.0	null
hippocampus (hippocampal formation)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.46929
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048046
ZKSCAN5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2925
CRCGN014_HEPG2_24H:J18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.7852
Slow twitch muscle fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.873
inferior olivary complex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191791
BRD-K65506286	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33861
TMX3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70805
Paraventricular nucleus of hypothalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.734
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.48192
Gonadotrophic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.209
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046677
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-VB-A8QN-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10U-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KLF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	118.546
cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315135
organic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
ZNF320	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	233.712
neostriatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.695763
Lambert-Eaton myasthenic syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.158
Peripheral nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.361
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.447
BRD-K24669989	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78366
External plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.862
TOV21G	CCLE Cell Line Gene CNV Profiles	1.0	1.67319
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.707
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
molecular_function	GO Molecular Function Annotations 2015	1.0	null
Thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.318
liminal part of the r10 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.88127
H3K27me3_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCA1	DepMap CRISPR Gene Dependency	1.0	2.00581
BRD-K35935439	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33572
CRCGN016_MCF10A.WT.HP_24H:K20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.59385
CACO2	CCLE Cell Line Gene CNV Profiles	1.0	1.3532
Basal forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.931
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62358
Rett syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
sleep	GeneRIF Biological Term Annotations	1.0	null
Asthma (childhood onset)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	1.13979
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.045
Cochlea	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02755
BRD-K06619604	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09531
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042435
Clathrin adaptor complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
RS11846	BioGPS Cell Line Gene Expression Profiles	1.0	1.0011
Presynaptic active zone cytoplasmic component	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.322
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.05186
Kidney renal papillary cell carcinoma_KIRP_TCGA-J7-8537-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Zfx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	41.0322
r10 part of basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01842
H3K4me1_K562_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PMC8563805-41598_2021_858_MOESM2_ESM.xlsx-Supplementary_Info_8-Gene_List_8_The_list_of_human_orthologs_of_the_downregulated_fly_DEGs_identified_from_PARIS_C571A_mutant_vs_PARIS_wild_type_comparison_ZNF746	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K37949240	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02816
CRCGN014_HEPG2_24H:D13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.76887
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.173003
Vaginal smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
Inner nuclear layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.57
antiporter activity	GO Molecular Function Annotations 2023	1.0	null
ZNF701	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	150.539
H3K4me2_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.772
CRCGN013_HEPG2_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.77329
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.51864
Endotoxemia	DisGeNET Gene-Phenotype Associations	1.0	null
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27017
GSE133764_2_v_0_chd2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Olfactory glomerulus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.711
Field CA3, stratum oriens	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09861
GSE242521,GSE242522_0_v_1_mettl3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
AP-1 adaptor complex	GO Cellular Component Annotations 2025	1.0	null
snoutepidermis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.959421
BRD-K26461918	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63454
Cyanosis	DisGeNET Gene-Phenotype Associations	1.0	null
Weak Cry	DisGeNET Gene-Phenotype Associations	1.0	null
cutaneous	GeneRIF Biological Term Annotations	1.0	null
mantle zone of r10BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16451
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Suprachiasmatic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.07
tongue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.477756
calcium- and calmodulin-dependent protein kinase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.217
BRD-K09112411	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0794
BRD-K32231853	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55585
ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
Lamina propria	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.319
Neuromuscular junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.784
SLTM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10093
HOP92	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.12515
clathrin-coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
inner plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.628293
BRD-K20051655	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01431
Pericellular basket	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.344
Overactive bladder syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.105
CRCGN015_HEPG2_48H:F16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.22815
NCI-H1838	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ammonium transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
Neuron to neuron synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.912
BRD-K99727034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03945
EGR1-20690147-ERYTHROLEUKEMIA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
Motor trigeminal nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.403
Lymphnode	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.23358
nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.28651
Potassium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.153
Stridor	DisGeNET Gene-Phenotype Associations	1.0	null
parvocellular part of the r9LRt	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04909
CRCGN011_HEPG2_24H:E12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0429
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.222224
BRD-K05734090	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03918
GSE212312_2_v_3_fbxw7_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH524	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69193
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9881
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11199
cytoplasmic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.18093
H3K9me3_CH12.LX_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.887133
coated vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.282558
PMC9859043-elife-78421-supp9.xlsx-LHX8_P-Gene_symbol_LHX8	Rummagene Transcription Factor Associations 2026	1.0	null
leucine	Phosphosite Textmining Biological Term Annotations	1.0	null
Substance dependence	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.38
Sensory ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.96
KDM4A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Sprout	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
TC71	CCLE Cell Line Gene Expression Profiles	1.0	1.36555
proton transmembrane transporter activity	GO Molecular Function Annotations 2023	1.0	null
Small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.93
Cranial ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.237
Multiple synapse bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.757
CE-96-GH46_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.377633
cerebellar cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27743
Encephalomyelitis	DisGeNET Gene-Disease Associations	1.0	null
BRD-K72083510	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.30301
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.565
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
Pterygium	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
Glutamate decarboxylase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.937
HCC1171	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50405
female urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.442578
PKBalpha_KO_GDS1784_197_mouse_Embryonic fibroblasts (MEFs) - 48h	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Sarin	CTD Gene-Chemical Interactions	1.0	null
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
Granule cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.992
clathrin-coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
CRCGN015_MCF10A_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.6756
Uroepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.169
ciliary muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.67495
GSE261563_6_v_1_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Neural plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.278
496100488_TCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.41786
AOB, mitral cell layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.44392
GSE109285_3_v_2_glucagon_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
VMCUB1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.78285
Dicarboxylic aminoaciduria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.164
Periciliary membrane compartment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.755
neuroblastoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.800208
CRCGN016_MCF10A.TP53.M_24H:E20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.83059
BRD-K22961642	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15084
Olfactory nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.62
lateral part of r6B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.3181
Reduced Fetal Movement	DisGeNET Gene-Phenotype Associations	1.0	null
Extensor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.531
Neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.007
Cell body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.83
varicosity	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.536183
Byssus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.513
Drug-Induced Liver Injury	CTD Gene-Disease Associations	1.0	1.5138
Gastrula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.858
Habenula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.131
primary auditory cortex (core)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.85647
schizophrenia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.635135
APELA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35762
epithalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.779816
hydrocortisone_homo sapiens_gpl201_gse21909	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Tibialis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.711
slc18a3	GeneRIF Biological Term Annotations	1.0	null
carotid artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.313683
496100434_HIP_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.15877
rhein	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67931
BRD-K49443464	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.42594
regulation of neuromuscular junction development	GO Biological Process Annotations 2025	1.0	null
ZNF143_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31593
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-5248-01A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Synaptic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.094
ZBTB7A_ECC-1_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM4A	ENCODE Transcription Factor Targets	1.0	null
submucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.961175
Rectum adenocarcinoma_READ_TCGA-AF-2689-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.598538
Neurogenic bladder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.581
GSE213588_8_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.591
Juxtaglomerular cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.911
Postsynaptic density	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.787
BRD-K82619993	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.87333
localization	GO Biological Process Annotations 2015	1.0	null
Spike	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.728
pioglitazone-5972	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Frontoparietal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.976
vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
decreased grip strength	MGI Mouse Phenotype Associations 2023	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
Masseter	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.68
BRD-K38997615	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.74975
BRD-K99521908	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49358
Chloride channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.503
Intermittent Episodes Of Respiratory Insufficiency Due To Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
JAK2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61152
Pancreatic adenocarcinoma_PAAD_TCGA-XN-A8T5-01A-12R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
striatum_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.10309
H3K27me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GA-94-MC54_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.673326
H3K4me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Diencephalon	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.026
BRD-K12240312	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21794
mantle zone of r6BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31691
Tic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.405
Stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.536
spinal root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.231482
clathrin-coated endocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
H3K27me3_cardiac mesoderm_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ganglion cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.577
upper (rostral) rhombic lip_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.827231
abnormal synaptic transmission	MPO Gene-Phenotype Associations	1.0	null
Paresis	DisGeNET Gene-Phenotype Associations	1.0	null
mantle zone of r3Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00938
CTCF	ENCODE Transcription Factor Targets	1.0	null
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.702
ISY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.16228
PG cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
Cervical dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.577
Glottis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.661
BRD-K05877335	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01365
BRD-K14098658	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37365
H3K27me3_CD4+ CD25+ CD127- Treg Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
mantle zone of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40526
Frontal pole, cerebral cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33882
small intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.511778
clathrin-sculpted vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
impaired exercise endurance	MPO Gene-Phenotype Associations	1.0	null
Cranium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.61
peripheral ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223177
mortality/aging	MPO Gene-Phenotype Associations	1.0	null
Coated membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
BRD-K35442564	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26033
C2BBE1	CCLE Cell Line Gene CNV Profiles	1.0	1.4586
nitrogen compound transport	GO Biological Process Annotations 2015	1.0	null
impaired coordination	MGI Mouse Phenotype Associations 2023	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Taste bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.232
cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
inorganic ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
bad5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.591
suggests	GeneRIF Biological Term Annotations	1.0	null
Vestibular hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.787
Hippocampus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.587
GSE90019,GSE90020_5_v_2_phf8_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81I-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neuropil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.21
assessed	GeneRIF Biological Term Annotations	1.0	null
Synucleinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.4
posterior cingulate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.279307
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12885
KARPAS-45	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE88819_3_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
plasma membrane part	GO Cellular Component Annotations 2015	1.0	null
BRD-K29441085	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05002
hippocampus (hippocampal formation)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.43553
SK-N-DZ	GDSC Cell Line Gene Expression Profiles	1.0	1.45851
Polymorphonuclear neutrophil	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.12
Rosette	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.111
Bucladesine	CTD Gene-Chemical Interactions	1.0	null
Autoimmune disease of central nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.277
BRD-K00191683	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.41953
BRD-K77150932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37382
BRD-K39978929	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3508
GSE226115,GSE226116_2_v_0_doxorubicin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PD-70-VS77_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.395502
Mitral cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
Atherosclerosis	CTD Gene-Disease Associations	1.0	1.11606
PEX5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60337
epidermal	GeneRIF Biological Term Annotations	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.863891
Spinal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.521
H3K9me3_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.593
H3K27me3_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cerebral gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.537021
meprylcaine-3544	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
H3K4me2_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal oxygen level	MPO Gene-Phenotype Associations	1.0	null
NG-108-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.462
organic substance transport	GO Biological Process Annotations 2015	1.0	null
Cranial nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.423
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.052
Axon initial segment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.521
SH-SY5Y cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.34
ATRAID	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28415
cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.2777
Tritocerebrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
Major depressive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.346
NH6	CCLE Cell Line Gene Expression Profiles	1.0	1.59755
Motor cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.775
r8 part of the paragigantocellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19598
REC1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.41926
H3K27me3_BJ_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
Cytoskeleton of presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.322
Cingulate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.858
GSE210682_2_v_3_methadone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE212312_1_v_3_fbxw7_human	RummaGEO Gene Perturbation Signatures	1.0	null
liminal part of the r9 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07275
Respiratory mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.512
Neurula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.959
Neuron projection membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.874
Subcommissural organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.724
Pons	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.261
Transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE242290_3_v_2_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
SK-N-FI	GDSC Cell Line Gene Expression Profiles	1.0	1.85225
Lymphatic system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Interstitial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.379
SMN-Sm protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.049
Retrosplenial area, lateral agranular part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.96125
BRD-K19862308	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.238
Anteromedial visual area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.79888
Lung adenocarcinoma_LUAD_TCGA-44-A47A-01A-21R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VD-76-SO91_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.23467
Pervasive developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.807
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.27717
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
EFO27	DepMap CRISPR Gene Dependency	1.0	2.15311
aminobenzovesamicol	Guide to Pharmacology Chemical Ligands of Receptors	1.0	null
Schwann cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.685
Congenital disorder of glycosylation Ij	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
Velum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.773
Midbrain central gray	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.546
large intestine	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.589234
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.746
H3K4me1_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
peripheral nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.35904
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.487
Lung carcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.399
JA-79-II25_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.564287
PMC11130167-41598_2024_60721_MOESM1_ESM.pdf-254-RXRA_RXRA	Rummagene Transcription Factor Associations 2026	1.0	null
CHD1	ENCODE Transcription Factor Targets	1.0	null
BRD-K35671498	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39552
PMC11825621-210_2024_3353_MOESM2_ESM.xlsx-AR-IL13_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SN-56 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.891
MCM3AP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32819
GSE109285_3_v_4_glucagon_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF384_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
down	GeneRIF Biological Term Annotations	1.0	null
NCIH2227	CCLE Cell Line Gene Expression Profiles	1.0	1.70598
Cortical amygdalar area, anterior part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.2413
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
SUZ12-18692474-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_SK-N-MC_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
head muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.523588
mRNA_SMAD4_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
CRCGN015_HEPG2_48H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.29703
Superior colliculus, zonal layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08508
Spinal Rigidity	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K19672435	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26145
Submandibular gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
BRD-K35788497	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00028
Lung squamous cell carcinoma_LUSC_TCGA-33-4533-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Alzheimer disease specific cell type	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.697
LC-12-VN85_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.634018
Twitch muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.165
Electrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.41
H3K4me1_thymus_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
acetylcholine transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K51568355	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4624
abnormal endplate potential	MPO Gene-Phenotype Associations	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.821502
Glaucoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
outer plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315861
mRNA_SOX17_20123909	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
NCI-H1648	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.30413
Ventral globus pallidus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.622
Lung squamous cell carcinoma_LUSC_TCGA-66-2778-01A-02R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DB-88-VW47_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.47347
mediodorsal nucleus of thalamus_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.943157
H3K4me3_cardiac muscle cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
NCIH1436	CCLE Cell Line Gene Expression Profiles	-1.0	-2.07006
entorhinal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294223
Dementia	DisGeNET Gene-Disease Associations	1.0	null
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.141
autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048715
SIN3B-21632747-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BECKER	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9248
H3K4me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CTCF_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
overexpressed	GeneRIF Biological Term Annotations	1.0	null
Cargo recognition for clathrin-mediated endocytosis	Reactome Pathways 2024	1.0	null
thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.480091
H3K4me3_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
GR-ST	COSMIC Cell Line Gene Mutation Profiles	1.0	null
mantle zone of r2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26964
BRD-K32445732	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.28037
MRPL20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8438
RELB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4827
adaptor-proteins-vesicular-transport	Phosphosite Textmining Biological Term Annotations	1.0	null
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.38097
nervous system phenotype	MPO Gene-Phenotype Associations	1.0	null
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
cell part	GO Cellular Component Annotations 2015	1.0	null
Pineal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.061
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31593
PMC9396374-Table_4.XLSX-AR_related_target_genes-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K15800236	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.68823
BRD-K14193598	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34685
gut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.519647
GSE157555,GSE157556_4_v_2_foxa2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.682
MOLT-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.838
H3K9me3_G1E_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Frontalis Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
Larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.981
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02755
ZFP42-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
medial superior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.76828
Pheochromocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.994
FKBP11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57176
staurosporine-508	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Clathrin coat	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
angle-closure glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.384079
BRD-K01951210	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53174
NCI-SNU-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
optic lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224398
Medial geniculate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.103
nucleus	GeneRIF Biological Term Annotations	1.0	null
Globus pallidus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.97
Neuron projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Horizontal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.356
HAND2-30127528-KELLY-HUMAN-BRAIN-NEUROBLASTOMA	ChEA Transcription Factor Targets 2022	1.0	null
coding	GeneRIF Biological Term Annotations	1.0	null
Dopaminergic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.838
BRD-K22308901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01933
SIN3B-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-3678-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Vesicle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.178
left colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.410111
Cerebral lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.653
external male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.517678
asian	GeneRIF Biological Term Annotations	1.0	null
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
GTF2F1	ENCODE Transcription Factor Targets	1.0	null
STXBP1	Pathway Commons Protein-Protein Interactions	1.0	null
synucleinopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.162858
abnormal social investigation	MPO Gene-Phenotype Associations	1.0	null
Inflammatory bowel disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
KM12	BioGPS Cell Line Gene Expression Profiles	1.0	0.842511
HCC1500	COSMIC Cell Line Gene Mutation Profiles	1.0	null
brain	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SNCA_KO_GDS4153_528_mouse_cerebellum	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ocellus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.434906
Communication disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.592
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.29764
Tail muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.226
hsa-miR-4533	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Cholinergic neuron_Brain_Human	CellMarker Gene-Cell Type Associations	1.0	null
H3K4me3_astrocyte of the cerebellum_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
neuronal	GeneRIF Biological Term Annotations	1.0	null
r10 part of vagal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.19046
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.685959
CRCGN011_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.20325
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.681
GSE224096_3_v_0_cocaine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OVCA420	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Frontal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.34
mantle zone of r10BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.88127
hindgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190908
18516279-GeneList	GeneSigDB Published Gene Signatures	1.0	null
DCTD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89637
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074504
NB6	GDSC Cell Line Gene Expression Profiles	1.0	1.74455
Symmetric synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.759
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.991
H3K4me3_cardiac mesoderm_hg19_5	ENCODE Histone Modification Site Profiles	1.0	null
SKMEL3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42995
ZNF384	ENCODE Transcription Factor Targets	1.0	null
Outer nuclear layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.902
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
periventricular stratum of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.79898
Lung Neoplasms	CTD Gene-Disease Associations	1.0	1.46883
MAX_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K67898193	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57041
COLO-680N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.517
Ulcerative colitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
VCAP	DepMap CRISPR Gene Dependency	1.0	2.13797
Neural tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.665
Climbing fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.995
brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.27023
Hyporeflexia	DisGeNET Gene-Phenotype Associations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6TV-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-M7-A71Z-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.941
Nodulus (X), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14787
CBP-21632823-H3396-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Cerebellar nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.452
Posterior nuclear complex of thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.046
Acetylcholine Neurotransmitter Release Cycle	Reactome Pathways 2014	1.0	null
Arrector pili muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.594
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.36178
Principal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.022
Muscular atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.643
superficial stratum of r6BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78479
Prostate adenocarcinoma_PRAD_TCGA-KK-A7AU-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
keratinocytes	GeneRIF Biological Term Annotations	1.0	null
MC116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60735
SNAI3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.1185
Seizures	DisGeNET Gene-Phenotype Associations	1.0	null
chagas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.309566
Nervous System Malformations	CTD Gene-Disease Associations	1.0	1.07269
horizontal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.412771
MYC_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K81665173	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68914
Malpighian tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.529
antennal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22246
BRD-K66145389	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20484
Fbt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.078
abnormal skeletal muscle fiber morphology	MPO Gene-Phenotype Associations	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-63-A5MV-01A-21R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100490_HIP_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.92386
alpha-motoneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.734
Facial motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.9279
Lateral dorsal nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
BRD-K14383477	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01789
Presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.686
PMC7941712-40478_2021_1135_MOESM12_ESM.xlsx-Table_S4D_DEG_ST-EPN-RELA-Unnamed_6_RELA	Rummagene Transcription Factor Associations 2026	1.0	null
Pierson syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
H3K4me1_Stomach Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
MDAMB436	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.934428
BRD-K78818514	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.0184
Iris smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.847
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3263
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_Symbol_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
bowel	GeneRIF Biological Term Annotations	1.0	null
BRD-K20724649	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.59973
DKMG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80472
regulation of biological quality	GO Biological Process Annotations 2015	1.0	null
BRD-K37657049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02554
Stratum lucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
Transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.031
EZH2_astrocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CEBPB_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acetate ester transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950743
r10 portion of the hypoglossal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.90173
intermediate stratum of 5BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12527
CRCGN014_HEPG2_24H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.88112
Cuticular plate	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.987
striatum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31267
embryonic stem no feeder	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.68998
stellate ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.81565
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.932
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01982
CRCGN011_HEPG2_24H:M13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5
Oliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.258
colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.493354
BRD-K10241968	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01318
basal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.39376
Cell body fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.172
stomatitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.133103
GSE111035,GSE111040_3_v_12_plag1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
clathrin-sculpted acetylcholine transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K59683187	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17308
Subiculum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.165
Rectum adenocarcinoma_READ_TCGA-DC-6681-01A-11R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SLC25A23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.58921
Periglomerular cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.957
Inferior olivary complex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.039
SNCA_KO_GDS4153_442_mouse_Cerebellum - 6 month	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K56591923	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27134
WM793B	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BACH1	ENCODE Transcription Factor Targets	1.0	null
AE-39-DG66_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.737581
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.329084
hair-cell stereocilium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
HuP-T3	GDSC Cell Line Gene Expression Profiles	-1.0	-1.45577
Calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.109
Ammon's horn	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01324
RNF2-18974828-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
layer 1 of OCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14312
COLO668	CCLE Cell Line Gene Expression Profiles	-1.0	-2.57853
eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.756191
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450657
AMMECR1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8697
Declive (VI)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12444
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055162
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4OZ-01A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nucleus of the lateral olfactory tract, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.08005
vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.292975
Glomus cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.326
TOR3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.45469
H3K4me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MYCN_01_296	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.69781
MCAS	CCLE Cell Line Gene CNV Profiles	1.0	1.48844
amyloid plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.532274
BRD-K70969650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88864
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
Growth cone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.395
PA-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.916
BRD-K54622858	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22226
Plasma membrane bounded cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.032
Hypodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.812
anterior (rostral) cingulate (medial prefrontal) cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.61908
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.517
Corpus cavernosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.174
Lung squamous cell carcinoma_LUSC_TCGA-60-2708-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K14251637	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0772
BRD-K14070721	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53476
Megacolon	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.509
Inner hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.509
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882611
H3K4me1_lung_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
22RV1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hypotonia	MGI Mouse Phenotype Associations 2023	1.0	null
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.1699
SHSYSY-RA	BioGPS Cell Line Gene Expression Profiles	1.0	2.41625
BRD-K14570970	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06649
clathrin coat of coated pit	GO Cellular Component Annotations 2025	1.0	null
BRD-K71970681	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39059
Physical disorder	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
H3K27me3_liver_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UMUC6	DepMap CRISPR Gene Dependency	1.0	3.53513
ZNF669	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.155
Centrum semiovale	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.58
Inferior colliculus, external nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03617
Dendritic branch point	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.795
CRCGN013_HEPG2_24H:I06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.40744
Dopaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.135
PMC11263707-41419_2024_6896_MOESM6_ESM.pdf-67-SIX3-AS1_SIX3	Rummagene Transcription Factor Associations 2026	1.0	null
ELL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15238
cerebral arterial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
Synganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.83
posterior (caudal) superior temporal cortex (area 22c)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.89005
Ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.475
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.74376
BRD-K53257131	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16105
increased motor neuron number	MPO Gene-Phenotype Associations	1.0	null
Cholinergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.913
hsa-miR-4731-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
external part of AOD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.55532
neuropeptides	Phosphosite Textmining Biological Term Annotations	1.0	null
quaternary ammonium group transmembrane transporter activity	GO Molecular Function Annotations 2023	1.0	null
corpus striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.43848
BRD-K71204648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.8173
Neurotransmitter release cycle	Reactome Pathways 2024	1.0	null
clathrin-coated vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.83067
ECC10	COSMIC Cell Line Gene Mutation Profiles	1.0	null
median eminence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.382508
hypothalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.677803
BRD-K82638914	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22596
Substantia innominata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.131
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048728
PMC11799530-12276_2024_1380_MOESM1_ESM.xlsx-DEG_KD_PC-Ensembl_ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Antennal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.751
CRCGN008_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.083
WRNIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.02755
BF-49-QA17_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.744241
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
positive regulation of synaptic transmission, cholinergic	GO Biological Process Annotations 2023	1.0	null
Cerebrospinal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.675
TE-12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
enteric	GeneRIF Biological Term Annotations	1.0	null
Zona incerta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.196
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
about	GeneRIF Biological Term Annotations	1.0	null
dorsal periolivary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.43262
MG63	CCLE Cell Line Gene Expression Profiles	-1.0	-1.6467
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.616
CRCGN015_MCF10A_48H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.42565
Dendritic branch	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.387
VESAMICOL	DGIdb Drug Targets 2026	1.0	13.233
BRD-K59708864	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.58121
glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.322779
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.5176
Anterior cingulate cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.567
Myenteric plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.427
cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.787299
neurotransmitter reuptake	GO Biological Process Annotations 2025	1.0	null
Parasympathetic ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.484
DPP7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6784
Thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.955
cochlear duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.142397
BRD-K27416453	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38031
dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45265
Mushroom body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.982
hyperactivity	MPO Gene-Phenotype Associations	1.0	null
NCAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.70518
Autism spectrum disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.714
Excitatory synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.711
H3K9me3_G1E-ER4_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
abnormalities	GeneRIF Biological Term Annotations	1.0	null
H4K20me1_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K86491317	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17172
Cochlear ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.077
H3K4me1_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
equilibrium	GeneRIF Biological Term Annotations	1.0	null
KLF4-19030024-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Diagonal band	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.524
smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.07397
Dendritic lamellar body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.788
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1639
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
avian pallium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.584022
ZNF281	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	272.584
BRD-K37387086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01091
Sympathetic chain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.31
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.77427
Pena-Shokeir Syndrome	DisGeNET Gene-Disease Associations	1.0	null
positive regulation of acetylcholine secretion, neurotransmission	GO Biological Process Annotations 2023	1.0	null
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.5324
single-organism transport	GO Biological Process Annotations 2015	1.0	null
BD-18-MM33_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.40894
Lewy body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.031
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4XL-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.04773
BRD-K78712486	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.30223
BRD-K97842654	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.17844
Cell lineage map for neuronal differentiation	WikiPathways Pathways 2024	1.0	null
Distal axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.867
Declive (VI), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11697
SK-HEP-1	GDSC Cell Line Gene Expression Profiles	1.0	2.92425
PMC4387713-supp_gad.255984.114_Table_S5.xlsx-S5B-Up_H3K4me3_DPY30_KD-Unnamed_12_AR	Rummagene Transcription Factor Associations 2026	1.0	null
organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.079433
meynert's basal nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.70968
BRD-K44497547	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.07494
cerebellar cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.05787
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.99
cell-cell signaling	GO Biological Process Annotations 2015	1.0	null
Plasma membrane region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.986
Astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.961
Impaired Exercise Tolerance	DisGeNET Gene-Phenotype Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4735-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
temporal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.46961
GSE148692,GSE148695_7_v_6_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
CEBPB-26923725-CHIP-SEQ-HEMANGIOBLAST-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H3K4me3_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Pick body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.514
ion transport	GO Biological Process Annotations 2015	1.0	null
cytoplasmic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K72713703	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06814
BRD-K89668690	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06265
CRCGN011_HEPG2_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.30515
PC14	DepMap CRISPR Gene Dependency	1.0	5.07054
GSE131161_1_v_0_rarres1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Field CA3, pyramidal layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15466
intermediate stratum of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34995
coated vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
SUZ12-18974828-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Apnea	DisGeNET Gene-Phenotype Associations	1.0	null
H3K27me3_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.3431
Synaptic vesicle, readily releasable pool	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.88
BRD-K59870481	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.99436
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
states	GeneRIF Biological Term Annotations	1.0	null
SUZ12_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K51972131	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56911
endocytic vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
BRD-K72060858	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.25578
sc71	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.514
CLPP_KO_GSE40207_399_mouse_Heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
decreased skeletal muscle mass	MPO Gene-Phenotype Associations	1.0	null
Lm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.565
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.358
prefrontal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.731442
Nystagmus	DisGeNET Gene-Disease Associations	1.0	null
abnormal synapse morphology	MPO Gene-Phenotype Associations	1.0	null
BRD-K14255526	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.75326
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.927451
intermediate stratum of r6Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.53978
acetylcholine-gated channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.501
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
including	GeneRIF Biological Term Annotations	1.0	null
OVSAHO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66301
chat	GeneRIF Biological Term Annotations	1.0	null
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55148
Neuromuscular disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Parietal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.955
striatum_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.903296
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4712-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gastrointestinal endocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.97
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64857
temporal muscle trigeminal motor cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.27134
FF-86-NH56_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.681582
Nucleus solitarius	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.886
recurrent	GeneRIF Biological Term Annotations	1.0	null
longitudinal smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.456828
CLCN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44025
EZH2-23942234-MYOBLASTS-AND-MYOTUBES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Hypothalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.554
trimethylcolchicinic acid-4787	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Neurotransmitter Release Cycle(Homo sapiens)	WikiPathways Pathways 2014	1.0	null
Smooth adductor muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
Presynaptic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.105
C-fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.385
CV-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.203
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.22481
Amnestic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.479
ng-108-15 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.790212
Intrinsic component of mitochondrial inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.017
Thorax muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.573
[<sup>3</sup>H]vesamicol	Guide to Pharmacology Chemical Ligands of Receptors	1.0	null
layer 2 of FCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37759
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08775
hyperactivity	MGI Mouse Phenotype Associations 2023	1.0	null
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	145.427
Primary hematopoietic stem cells G-CSF-mobilized Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.876724
intrinsic component of plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
p2190	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.501
uveal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.070706
Shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.479
Endoplasmic reticulum cisternal network	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.296
LOVO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC7265345-41598_2020_65638_MOESM5_ESM.xlsx-3_E2F2-Gene_E2F2	Rummagene Transcription Factor Associations 2026	1.0	null
Status epilepticus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.388
ChIP_H3K27me3_20682450_humanESC	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
BRD-K84935903	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.76091
GSE125011_0_v_1_cd83_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Autonomic nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.943059
C bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.857
H3K4me1_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Plasma membrane region	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
autonomic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.142887
regulation of long-term synaptic potentiation	GO Biological Process Annotations 2023	1.0	null
496100492_TCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.40515
SNARE complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.456
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23008
Blastopore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.897
CEBPB_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K41289356	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.97766
H3K27me3_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K27914478	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28552
Progressive supranuclear palsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.812
sciatic nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.574416
Anterior horn cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.799
populations	GeneRIF Biological Term Annotations	1.0	null
abnormal neuron morphology	MPO Gene-Phenotype Associations	1.0	null
BRD-K43271856	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09968
H3K4me3_retinal pigment epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Foot muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.258
H3K4me3_iPS DF 6.9	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.439
atrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.243605
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83671
Vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.733
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9I9-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sensory dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.219
H3K9me3_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.282225
SF295	GDSC Cell Line Gene Expression Profiles	-1.0	-1.55648
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.956428
REST_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K99847716	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31881
PMC8755441-mmc3.xlsx-IRF7-Up-JARID2_IRF7	Rummagene Transcription Factor Associations 2026	1.0	null
Regio parietalis capitis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.148
Endopeduncular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.137
cell body fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.187333
GSE206342_1_v_0_kpna2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_fibroblast of the aortic adventitia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
membrane-glycoproteins	Phosphosite Textmining Biological Term Annotations	1.0	null
neonatal lethality, complete penetrance	MGI Mouse Phenotype Associations 2023	1.0	null
laryngeal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28887
Deformity Of Spine	DisGeNET Gene-Disease Associations	1.0	null
TRAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12982
Kidney Chromophobe_KICH_TCGA-KL-8338-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KLF4-19030024-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
BRD-K35193502	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20718
Lung squamous cell carcinoma_LUSC_TCGA-22-4595-01A-01R-1201-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6097
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9138
part	GeneRIF Biological Term Annotations	1.0	null
small cell lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.133181
Preoptic area	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.486
choroid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.260945
Microretrognathia	DisGeNET Gene-Phenotype Associations	1.0	null
layer 1 of FCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.6222
liminal part of the r5 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.44299
visceral hump	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.516497
Inhibitory synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.845
Varicosity	DisGeNET Gene-Disease Associations	1.0	null
Specific developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.968
Lung squamous cell carcinoma_LUSC_TCGA-21-5783-01A-41R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Chromosomal duplication syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.395
m15	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.332
H3K4me1_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
vesicles	Phosphosite Textmining Biological Term Annotations	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-3007-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K27me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CCNG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0647
monoamine:proton antiporter activity	GO Molecular Function Annotations 2025	1.0	null
Orbital area, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20499
E2F6_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SYO1	DepMap CRISPR Gene Dependency	1.0	3.22439
BRD-K65494150	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00526
adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.998473
abnormal axial skeleton morphology	MPO Gene-Phenotype Associations	1.0	null
SNU398	CCLE Cell Line Gene CNV Profiles	1.0	1.50923
Perturb_8897_KD_FOXM1_SRP359044	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	3.42873
muscle fibre	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.469987
Cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.734
AP-type membrane coat adaptor complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
carbohydrate metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170544
GSE183335,GSE183351_1_v_2_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
H3K4me2_myotube_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
astroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065713
Colon ascendens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.016
KARPAS299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49691
first	GeneRIF Biological Term Annotations	1.0	null
Submucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.937
rhombomere 11	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.1909
GSE174701_1_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Arteriole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.242
clathrin-sculpted acetylcholine transport vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
EZH2_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.440124
Precancerous Conditions	CTD Gene-Disease Associations	1.0	1.08975
Presynapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.146
Medial septum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.634
ChIP_H3K9me3_19884255_mouseESC	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15368
SW837	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K91596921	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59231
Presynaptic cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.353
Presynapse	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Inhibitory neuromuscular junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.418
Congenital Kyphoscoliosis	DisGeNET Gene-Disease Associations	1.0	null
GSE153871_5_v_3_cytarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Vestibular labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.666
TMEM70	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.678
NCVADR RES	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.6157
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table8_gnomAD_AFR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.2193
clathrin coat of trans-Golgi network vesicle	GO Cellular Component Annotations 2025	1.0	null
increased susceptibility to pharmacologically induced seizures	MGI Mouse Phenotype Associations 2023	1.0	null
Lung adenocarcinoma_LUAD_TCGA-99-7458-01A-11R-2039-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K21443215	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.85196
posteromedial visual area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-3.37327
POLR2AphosphoS5_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE196259_1_v_3_gcm1_human	RummaGEO Gene Perturbation Signatures	1.0	null
alphasynuclein	GeneRIF Biological Term Annotations	1.0	null
ZNF257	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	94.0609
GSE172016_2_v_0_paclitaxel_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZBTB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.7526
BRD-K29560103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23623
Gut wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.17
BRD-K05699155	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55221
NUDT17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6917
SNU-C5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN015_MCF10A_48H:H11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.22465
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.39881
C6orf47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67016
TFDP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8595
trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.283191
CRCGN016_MCF10A.TP53.M_24H:N14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.59515
Type 2 diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.314
Pheochromocytoma and Paraganglioma_PCPG_TCGA-S7-A7WQ-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC3851989__F3	PFOCR Pathway Figure Associations 2024	1.0	null
PMC3870072__F4	PFOCR Pathway Figure Associations 2023	1.0	null
OVMIU	DepMap CRISPR Gene Dependency	1.0	3.18293
reciprocal	GeneRIF Biological Term Annotations	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
GSE42805,GSE42811_2_v_3_cocaine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
integral component of plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
CLPP_KO_GDS4791_541_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
RIMS1	Pathway Commons Protein-Protein Interactions	1.0	null
RNF2-27304074-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GABA-ergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.896
Urinary bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.865
hsa-miR-412	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
somatosensory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244545
Psp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.784
clathrin coat of endocytic vesicle	GO Cellular Component Annotations 2023	1.0	null
BRD-K09977699	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89973
rat	Phosphosite Textmining Biological Term Annotations	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.563
ZNF845	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96376
Cerebral gray matter	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.376
superficial stratum of r3Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19768
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12885
Satellite glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.864
H4K20me1_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
MYC-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
Respiratory failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
Medium spiny neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.761
H3K4me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K52842821	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.35879
KMRC1	CCLE Cell Line Gene CNV Profiles	1.0	1.45956
decreased grip strength	MPO Gene-Phenotype Associations	1.0	null
ADAMTS7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53493
cardiac muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.360036
BRD-K86019347	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42625
Lung squamous cell carcinoma_LUSC_TCGA-39-5040-01A-21R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
obstructive	GeneRIF Biological Term Annotations	1.0	null
SUZ12	ENCODE Transcription Factor Targets	1.0	null
autonomic nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.117838
BRD-K79627231	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76749
OCI-M2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.14399
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.60087
BRD-K29571884	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1363
r10 part of external cuneate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.73074
Retrosplenial area, lateral agranular part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.45855
artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.547724
Frt	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.993
vascular dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.320454
Primary somatosensory area, lower limb, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09678
Neuronal System	Reactome Pathways 2014	1.0	null
TGBC11TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060552
GSE182921_0_v_1_slit2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Anteromedial visual area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.30512
NCIH2085	CCLE Cell Line Gene Expression Profiles	1.0	2.71264
SNU1214	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47937
CEBPB-26923725-CHIP-SEQ-MESODERM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0578
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35742
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962064
WC-16-IR43_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.04616
BRD-K95558029	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24098
SW780	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34447
BRD-K37790543	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-5.28761
Ventromedial hypothalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.029
Synaptic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.243
H3K4me3_olfactory bulb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Epilepsy	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7414-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pulmonary adenocarcinoma in situ	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.426
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
rett syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355604
BRD-K36099605	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36181
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.35
Transport vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.635
BRD-K09663164	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23065
Neuroblastoma	HuGE Navigator Gene-Phenotype Associations	1.0	null
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Bipolar disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.394
BRD-K32451879	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80209
Memory Impairment	DisGeNET Gene-Phenotype Associations	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.23975
CE-96-GH46_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.545228
parenchyma	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040725
Flexor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.757
apnea	GeneRIF Biological Term Annotations	1.0	null
Myasthenia gravis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.617
CRCGN015_HEPG2_48H:P04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.16341
Nose	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.493
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-UC-A7PF-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sciatic nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.648
Neuroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.556
Stomodeum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-4858-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.87382
BRD-K79481905	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.8572
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.5117
Substance abuse	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.395
GSE135705_5_v_3_corticosterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ZNF324B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38162
Histaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.317
Rectum adenocarcinoma_READ_TCGA-AG-3732-11A-01R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137317
Membrane stack	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.502
acetylcholine:proton antiporter activity	GO Molecular Function Annotations 2023	1.0	null
Giant cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.797
vertical nucleus of the diagonal band	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03003
Neocortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.067
Perturb_2167_KO_Sirt3_SRP403451	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	8.21006
BRD-K26954192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03845
cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
BRD-K53443314	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02461
BRD-K14117311	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.76449
Orbital area, lateral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20006
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A196-01A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K86961579	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.99596
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.541377
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
clathrin-sculpted acetylcholine transport vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
r9 part of the inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.52994
Apical dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.115
[3H]VESAMICOL	DGIdb Drug Targets 2026	1.0	13.233
Urophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
abnormal muscle physiology	MPO Gene-Phenotype Associations	1.0	null
PMC3789264__F7	PFOCR Pathway Figure Associations 2023	1.0	null
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-A5SO-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
cystitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.232142
abnormal neuromuscular synapse morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.578
Rce	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.023
Dendrite membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.777
r5 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12882
extraocular muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.295655
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29353
JARID2-20064375-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
CL-34	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Nasal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.496
vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.719113
LRRK2_mutant_32_GDS4400	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.90301
BRD-K23440419	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50173
Dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.95
substrate-specific transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
AB-85-YK41_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.613666
Spiral organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.53
GSE213588_8_v_1_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MSTO211H	DepMap CRISPR Gene Dependency	1.0	6.64714
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8913
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.632
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.493354
Paracentral lobule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.658
spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12704
olfactory lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.758673
BRD-K16331797	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47631
BRD-K24156533	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.21449
Olfactory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.31
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.824477
EC-62-OE64_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.222175
Mantle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.524
non-neuronal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.201
H3K27me3_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K16496880	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.38607
membrane part	GO Cellular Component Annotations 2015	1.0	null
Feeding Difficulties	DisGeNET Gene-Phenotype Associations	1.0	null
coated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Idiopathic generalized epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
Dorsal motor nucleus of the vagus nerve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.06543
CYCLIN_D1_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
Ophthalmoplegia	DisGeNET Gene-Phenotype Associations	1.0	null
Anterior commissure	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.502
EW-22	GDSC Cell Line Gene Expression Profiles	-1.0	-1.46219
Visceral hump	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.657
penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.580417
MYC-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
ChIP_ZFP42_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Nerve plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.633
PMC3644282-1471-2164-14-110-S3.xls-Contextual_Gene_Set_Ref_Can-SRCAP_SRCAP	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN015_HEPG2_48H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.72587
Acquired Kyphoscoliosis	DisGeNET Gene-Disease Associations	1.0	null
Amacrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.054
hippocampal pyramidal layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.89477
Ependymocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.067
neurogenic bladder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.740299
anion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
SNU423	CCLE Cell Line Gene Expression Profiles	1.0	1.55203
Middle frontal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.936
dorsal thalamus_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02335
neurotransmitter transport	GO Biological Process Annotations 2015	1.0	null
risk	GeneRIF Biological Term Annotations	1.0	null
Female urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.741
intracranial arterial disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
SKGIIIA	DepMap CRISPR Gene Dependency	1.0	2.42492
HDAC2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986294
AA-23-FM46_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.453107
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.049315
GSE70935_2_v_4_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
transport vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Pacemaker cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.487
Saccule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.662
CRCGN016_MCF10A.TP53.M_24H:H10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.7689
striatum_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59468
H3K9me3_skeletal muscle myoblast_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ChIP_JARID2_20064375	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Colon muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.807
Sleep apnea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.253
Stellate ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.907
Prostate adenocarcinoma_PRAD_TCGA-HC-A48F-01A-11R-A250-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mantle zone of r5BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23459
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
STAT6	MotifMap Predicted Transcription Factor Targets	1.0	null
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
EZH2	ENCODE Transcription Factor Targets	1.0	null
MASP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77132
serotonin transport	GO Biological Process Annotations 2023	1.0	null
PBDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7422
GSE174701_4_v_0_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
clathrin coat of endocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
SW872	GDSC Cell Line Gene Expression Profiles	-1.0	-1.47091
GSE226115,GSE226116_1_v_0_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN016_MCF10A.TP53.M_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.2172
Perturb_13060_KO_Alk5_SRP272131	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.84072
Neurosecretory vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.095
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A7IJ-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K63858518	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51351
amygdaloid complex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.826188
Inferior olivary nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.962
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A5BT-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.214388
H3K27me3_H7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A461-01A-41R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.2944
Striatonigral neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.947
Postsynaptic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.122
Interstitial cystitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.498
RCC-JF	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Vesicle-mediated transport	Reactome Pathways 2024	1.0	null
GNA11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7578
ChIP_MTF2_20144788	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
cerebellar cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.29509
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076936
intermediate filament cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.383895
RAD21_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1954	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.14241
GP5D	COSMIC Cell Line Gene Mutation Profiles	1.0	null
myelencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.154841
Embryoid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.246
CLPP_KO_GDS4791_376_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Cytosolic region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.752
BRD-K03376048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.35634
GSE113734_3_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	1.0	null
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2864
flrt2	GeneRIF Biological Term Annotations	1.0	null
translation	GeneRIF Biological Term Annotations	1.0	null
NANOG-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.081458
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.224884
H3K4me3_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099525
Anterior olfactory nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.33663
Cingulate gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.886
mantle zone of r9BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01152
r1 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00085
ZNF143	ENCODE Transcription Factor Targets	1.0	null
clathrin-coated endocytic vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
dexamethasone_mus musculus_gpl5137_gse10900	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4143-01A-01R-1188-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.32164
Oligodendrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.614
Epithalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.935
Laterodorsal thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.624
SIN3A_H1-hESC_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
pyramidal neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.895195
SMN complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.05
AC-35-CK01_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.18366
Detrusor sphincter dyssynergia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.534
axon	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.36968
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4707-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.0
Soleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.469
H3K9ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Left colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.367
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.542566
positive regulation of synaptic transmission	GO Biological Process Annotations 2023	1.0	null
ES-I3 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.92353
cos-cells	Phosphosite Textmining Biological Term Annotations	1.0	null
Tentacle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.98543
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.37687
Neurofibrillary tangle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.604
GSE198165,GSE198166_6_v_11_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CTBP2	ENCODE Transcription Factor Targets	1.0	null
monovalent inorganic cation transport	GO Biological Process Annotations 2015	1.0	null
cochlea	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.115432
abnormal learning/memory/conditioning	MPO Gene-Phenotype Associations	1.0	null
hsa-miR-1343	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
H3K27me3_small intestine_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
amyotrophic lateral sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.668345
Sensory system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
POU5F1-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
open	GeneRIF Biological Term Annotations	1.0	null
NCIH1993	DepMap CRISPR Gene Dependency	1.0	2.80224
Muscle tendon junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.553
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29466
Lung adenocarcinoma_LUAD_TCGA-86-7714-01A-12R-2170-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
r5 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.43297
H3K36me3_cardiac mesoderm_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
r2 part of the ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18653
Weight Gain	CTD Gene-Disease Associations	1.0	1.10282
monovalent inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K27248268	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.87061
Physostigmine	CTD Gene-Chemical Interactions	1.0	null
Necrosis	CTD Gene-Disease Associations	1.0	1.42994
BRD-K21139023	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.88615
Acute Myeloid Leukemia_LAML_TCGA-AB-2862-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL120	CCLE Cell Line Gene Expression Profiles	1.0	1.36876
tretinoin-384	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864611
gut wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.779401
H3K9me3_G1E_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Presynaptic density	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.055
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49395
AP-1 adaptor complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
MHH-NB-11	GDSC Cell Line Gene Expression Profiles	1.0	2.22902
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-WT1_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K98545272	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00794
Small Intestine - Terminal Ileum	GTEx Tissue Gene Expression Profiles 2023	1.0	5.6601
anterior (rostral) cingulate (medial prefrontal) cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.969425
abnormal locomotor behavior	MPO Gene-Phenotype Associations	1.0	null
monoamine:proton antiporter activity	GO Molecular Function Annotations 2023	1.0	null
homeostasis/metabolism phenotype	MPO Gene-Phenotype Associations	1.0	null
Subthalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.556
GSE113734_1_v_0_qprt_human	RummaGEO Gene Perturbation Signatures	1.0	null
spanned	GeneRIF Biological Term Annotations	1.0	null
Lymphatic system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Secretory vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.906
ALVA31	BioGPS Cell Line Gene Expression Profiles	1.0	0.897191
H3K4me1_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K78748401	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.69846
Lateral entorhinal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.911
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
Parahippocampal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.288
Multiple system atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.487
clathrin-sculpted acetylcholine transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
CEBPB-26923725-CHIP-SEQ-HEMOGENIC-ENDOTHELIUM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Prenatal Exposure Delayed Effects	CTD Gene-Disease Associations	1.0	1.05793
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.383
Clitoris	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.09
NLGN1_KD_GDS4759_335_mouse_E16 primary cortical neuron cultures	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K06724886	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5633
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
distal	GeneRIF Biological Term Annotations	1.0	null
GSE235120_1_v_0_pidd1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
abnormal motor neuron innervation pattern	MGI Mouse Phenotype Associations 2023	1.0	null
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.958
496100586_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.09355
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table6_gnomAD_EUR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
Perturb_8584_OE_Sorl1_SRP261088	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.57361
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08753
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K95666495	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70479
JAR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
External female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.492
Olfactory bulb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.094
tobacco use disorder	GAD Gene-Disease Associations	1.0	null
hsa-miR-4728-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
hindlimb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216528
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8071
periventricular stratum of r10Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.19444
cytoskeletal part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.365095
nerves	GeneRIF Biological Term Annotations	1.0	null
Orbital area, medial part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.62703
BRD-K16843478	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00395
Duodenum Mucosa	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	2.41061
Multiple sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.268
PMC8755441-mmc3.xlsx-IRF7-Up-SUZ12_IRF7	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-765	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Gravid adult	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.974
PMC10746608-427_2023_709_MOESM4_ESM.xlsx-KLF4_Targets_Enrichment-Unnamed_30_KLF4	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4895-01A-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Plantlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.742
transport vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
H3K27me3_iPS DF 19.11	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Trigeminal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.694
Dopamine beta-hydroxylase deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.219
H3K9ac_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
positive regulation of synaptic transmission	GO Biological Process Annotations 2025	1.0	null
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K85112460	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44104
Sarcoma_SARC_TCGA-IS-A3KA-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BACH1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
single organism signaling	GO Biological Process Annotations 2015	1.0	null
KLF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	136.368
GSE183335,GSE183351_1_v_0_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Alcohol dependence	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
Tracheal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.057
anterograde trans-synaptic signaling	GO Biological Process Annotations 2023	1.0	null
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.75247
nucleus of Barrington	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06237
MTF2-20144788-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PEO4	DepMap CRISPR Gene Dependency	1.0	2.00147
BRD-K45904718	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43284
astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220604
CHAT	Pathway Commons Protein-Protein Interactions	1.0	null
Body wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.629
OVCAR8	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.51313
BRD-K40143134	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15648
neuropil	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315498
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	1.94295
Ocular motility disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
MAX_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
acetylcholine transmembrane transporter activity	GO Molecular Function Annotations 2025	1.0	null
Central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.858
carotid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.749166
IM-95	COSMIC Cell Line Gene Mutation Profiles	1.0	null
bulbourethral gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.585625
Deutocerebrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.212
Pyramidal neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.224
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.619814
GSE210101,GSE210114_0_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DE-81-PO11_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.391809
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.56
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30236
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951099
MG63	CCLE Cell Line Gene CNV Profiles	1.0	2.34077
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.74376
ZNF93	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	205.051
ZFP281-18757296-E14-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
oliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182466
nih 3T3	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-2.20484
SP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	155.826
PMC7291745-12967_2020_2407_MOESM2_ESM.xlsx-Table_S1D_CCF_pairs-locus_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
JARID2	ChEA Transcription Factor Targets	1.0	null
ENOPH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72579
cell projection part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.24865
GSE68156_3_v_5_dextran_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Parkinson's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.388
respiratory mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126369
Middle cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
Ventral striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.648
Golgi-associated vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CRCGN015_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.0859
dorsal raphe nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.370496
Sudden Episodic Apnea	DisGeNET Gene-Disease Associations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-KU-A6H7-06A-21R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SW48	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cerebellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.905404
Head capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.889
BRD-K26094217	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1787
INTS10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.6004
KDELR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21423
Anterior olfactory nucleus, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.132
EZH2_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Caudate nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.821
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
Retinal ganglion cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.498
SU-DHL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40379
PMC5384880__F8	PFOCR Pathway Figure Associations 2023	1.0	null
HUH-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Notochord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.052
clathrin-sculpted acetylcholine transport vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A7JA-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_240_KD_CYFIP1_SRP061192	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-4.51148
SLITRK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73152
BRD-K84478344	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83275
midbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.837414
T-bar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.758
SNU46	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44662
r10 part of the trigeminal column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31991
diencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.975449
Lung squamous cell carcinoma_LUSC_TCGA-85-8350-01A-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN014_HEPG2_24H:I12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.03495
Breast Neoplasms	CTD Gene-Disease Associations	1.0	1.16567
BRD-K91003483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03909
REST-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me3_SK-N-SH_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K00562490	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23193
hypothalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310059
U20S	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.885897
Foxn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.6932
Epiphysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
c1192	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.609
LRP11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.07486
H3K27me3_endothelial cell of umbilical vein_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-A73618687	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07978
CRCGN015_MCF10A_48H:M16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.72805
Rectum adenocarcinoma_READ_TCGA-AF-2691-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-91-8499-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lateral geniculate body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.731
lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066133
H3K4me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Hairy cell leukemia cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.814
substance-related disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.523
CRCGN015_HEPG2_48H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.55666
Enteric plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.462
asymmetric synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.433012
secretion	GO Biological Process Annotations 2015	1.0	null
Pain disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
Raphe nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.934
pc12-cells	Phosphosite Textmining Biological Term Annotations	1.0	null
hippocampus (hippocampal formation)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.57264
Prostate adenocarcinoma_PRAD_TCGA-J9-A52B-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal dominant distal hereditary motor neuronopathy 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.427
basal ganglia disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.503824
myenteric plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21891
Corn silk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
Alzheimer Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
LC-12-VN85_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.828193
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.5403
r5 part of A5 noradrenergic cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.99666
Nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.304
Ependymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.147
H4K20me1_HepG2_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.027
arteriosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.10439
praziquantel-5874	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
ventrolateral periolivary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.42983
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A8AZ-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE187006_3_v_2_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K47707657	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19185
PRIMPOL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07527
variable	GeneRIF Biological Term Annotations	1.0	null
Temporal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.603
Pain agnosia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
abnormal spinal cord morphology	MPO Gene-Phenotype Associations	1.0	null
BRD-K18462967	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11804
CRCGN015_HEPG2_48H:J17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.96688
Intellectual disability	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.464
Seminal vesicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.035
Peripheral nervous system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Spinal cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.555
Hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.324
Essential tremor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.09
MXI1_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Atrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.528
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.802132
PMC11401508-NIHMS2019525-supplement-2.xlsx-Sheet1-SP1_candidate_repressors_SP1	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN014_HEPG2_24H:K02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.38246
H3K4me1_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
cefalexin-5250	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Nystagmus	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K16207499	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.6393
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.3502
etamsylate-4576	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Fascia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.94
Tadpole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.314
Myelinating Schwann cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.727
SubthalamicNucleus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.12355
positive regulation of synaptic transmission, cholinergic	GO Biological Process Annotations 2025	1.0	null
transcription	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_MCF10A.TP53.M_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2017
Thoracic ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.214
H3K9me3_erythroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
acetylcholine transport	GO Biological Process Annotations 2023	1.0	null
NB13	DepMap CRISPR Gene Dependency	1.0	9.68464
positive regulation of long-term synaptic potentiation	GO Biological Process Annotations 2025	1.0	null
acetylcholine transport	GO Biological Process Annotations 2025	1.0	null
BRD-K99119142	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.15231
Dentate gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.735
Cytoplasmic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.576015
E2F6_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K56976888	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14144
XE-69-AT35_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.398121
BRD-K27384243	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57214
Lewy neurite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.087
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08476
cell-nucleus	Phosphosite Textmining Biological Term Annotations	1.0	null
basal forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.88581
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.547
Cortical Lewy body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.247
DCHS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45654
GSE225901_0_v_1_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
decreased skeletal muscle fiber size	MPO Gene-Phenotype Associations	1.0	null
Smooth endoplasmic reticulum cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.298
Cation channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.986
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.62991
regulation of long-term synaptic potentiation	GO Biological Process Annotations 2025	1.0	null
cerebral gray matter	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.15939
Extensor digitorum longus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.396
routine	GeneRIF Biological Term Annotations	1.0	null
synaptic transmission	GO Biological Process Annotations 2015	1.0	null
CRCGN015_MCF10A_48H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.53038
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.841
nerve trunk	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.757845
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1135
Brain ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.945
Asthma	DisGeNET Gene-Disease Associations	1.0	null
GSE94814_1_v_0_reck_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
CTCF_limb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
JHH-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Tendinosis	DisGeNET Gene-Disease Associations	1.0	null
Cholinergic interneuron_Brain_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
orbital frontal cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.17743
acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222822
SNAP25	Pathway Commons Protein-Protein Interactions	1.0	null
mantle zone of r5Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.44262
H3K27me3_spleen_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Septal area	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.949
Dendritic spine head	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.621
abnormal object recognition memory	MPO Gene-Phenotype Associations	1.0	null
mantle zone of r10Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31901
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043088
r10 part of basolateral reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16451
site	GeneRIF Biological Term Annotations	1.0	null
Intestinal obstruction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
BRD-K40841951	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54895
BRD-K64317740	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.0174
Brain ischemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.375
CRCGN009_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.96066
F3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14268
Detrusor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.214
Uterine horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.046
BRD-K11516621	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0079
GSE198165,GSE198166_6_v_3_zfp266_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.287
TE1	CCLE Cell Line Gene CNV Profiles	1.0	1.48383
dense core granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.794229
H3K4me1_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Olfactory tubercle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.68
Central medial thalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.889
spiral organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.160616
cytoplasmic vesicle part	GO Cellular Component Annotations 2015	1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.191777
Prostate adenocarcinoma_PRAD_TCGA-HI-7168-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE214248_0_v_1_cxcl8_human	RummaGEO Gene Perturbation Signatures	1.0	null
EC-62-OE64_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.645143
central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.32541
ventrolateral prefrontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.33504
hsa-miR-125a-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.085563
samples	GeneRIF Biological Term Annotations	1.0	null
Physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.603
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950013
hsa-miR-3155	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
BRD-K94411351	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.077
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HL-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
astrocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224893
NCIH1838	CCLE Cell Line Gene CNV Profiles	1.0	2.05419
throat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062011
Anterior chamber of the eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
Myosin VI complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.803
iris disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.120992
foot muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.808551
Narcolepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.483
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OVCA420	DepMap CRISPR Gene Dependency	1.0	2.90218
disability	GeneRIF Biological Term Annotations	1.0	null
Vesicle coat	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
GSE150134_1_v_0_fluorouracil_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.086
Coelomic fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.659
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table2_ChinaMAP_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
clathrin-coated endocytic vesicle	GO Cellular Component Annotations 2025	1.0	null
POLR2AphosphoS5_neural cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me1_Brain Hippocampus Middle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CRCGN010_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9661
neurotransmitter reuptake	GO Biological Process Annotations 2023	1.0	null
Pars compacta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.575
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
noncoding	GeneRIF Biological Term Annotations	1.0	null
ChIP_KLF4_19030024	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
tracheal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.21883
BRD-K21771449	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38021
Gastrocnemius	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882611
glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.170544
laterodorsal tegmental nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21802
sympathetic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.17447
A-Vietnam-1203_CIP048_RG3-2004(H5N1)PB1-F2del_1day-MOI-10^4_None_GSE44441	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.83317
Kyphoscoliosis Deformity Of Spine	DisGeNET Gene-Disease Associations	1.0	null
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.375
BRD-K17659275	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09429
cht1	GeneRIF Biological Term Annotations	1.0	null
clathrin-sculpted acetylcholine transport vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
SIN3A	ENCODE Transcription Factor Targets	1.0	null
Clathrin vesicle coat	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
brain ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.436055
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.646
Ventral nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.198
endocytic vesicle membrane	GO Cellular Component Annotations 2023	1.0	null
intermediate stratum of DG	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01245
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.591
urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.768612
Cystitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
Lung squamous cell carcinoma_LUSC_TCGA-34-2600-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ventral globus pallidus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610541
peripheral nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.816068
Cell junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.959
abnormal innervation	MPO Gene-Phenotype Associations	1.0	null
neuroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.245491
BRD-K01691949	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18092
Proximal dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.27
increased susceptibility to induction of seizure by inducing agent	MPO Gene-Phenotype Associations	1.0	null
PXDN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25653
Chromaffin granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.391
primary motor cortex (area M1, area 4)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.36131
Talipes	DisGeNET Gene-Disease Associations	1.0	null
BRD-K54549319	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01412
Myotube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.36
BRD-K60107240	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09416
Chromaffin cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.704
r10 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20518
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K76960042	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19416
BRD-K26631178	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04343
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.472
H3K4me3_Mobilized CD34 Primary Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
autonomic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.45518
Distal Lower Limb Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.075496
Neuron spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.691
abnormal nervous system physiology	MPO Gene-Phenotype Associations	1.0	null
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.217762
nucleus	Phosphosite Textmining Biological Term Annotations	1.0	null
Diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
Muscularis mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
Muscular coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.602
G protein-coupled receptor dimeric complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.418
abnormal miniature endplate potential	MGI Mouse Phenotype Associations 2023	1.0	null
BRD-K32686643	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56224
BRD-K30145193	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.78458
diabetic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.283297
SW626	DepMap CRISPR Gene Dependency	1.0	5.62318
cyanosis	MGI Mouse Phenotype Associations 2023	1.0	null
melanocytes	GeneRIF Biological Term Annotations	1.0	null
KARPAS422	DepMap CRISPR Gene Dependency	1.0	4.57478
JL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35725
motoneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.67256
Neurohypophysis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.292
GSE131161_2_v_4_rarres1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
intermediate part of r9B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01206
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.80615
intermediate stratum of r2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18755
VA-48-RJ44_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.719141
GSE242333_0_v_2_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.731442
voltage-gated potassium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.156
H3K27me3_G1E_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ELK4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0426
MDA MB435	BioGPS Cell Line Gene Expression Profiles	1.0	1.34168
axon collateral	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.453223
Diabetes Mellitus	CTD Gene-Disease Associations	1.0	1.05312
substrate-specific transporter activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K04969760	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3903
Female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.496
BRD-K21786986	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63004
DBH_KO_GSE33906_53_mouse_heart (E10.5)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
PMC6899527__F3	PFOCR Pathway Figure Associations 2024	1.0	null
urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.071318
Pancreatic adenocarcinoma_PAAD_TCGA-3A-A9IO-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053222
Sensillum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.652
Cochlear hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.848
clathrin-coated pit	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.408666
H3K9me3_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Muscle fibre	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.913
impaired exercise endurance	MGI Mouse Phenotype Associations 2023	1.0	null
dendritic shaft	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.519389
presynaptic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.192423
EZH2-27294783-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
CRCGN017_MCF10A.TP53.M_24H:O20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.20214
detected	GeneRIF Biological Term Annotations	1.0	null
BRD-K06486611	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39509
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periventricular stratum of r9Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.97192
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
BRD-K17133642	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51862
Cerebral amyloid angiopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
r9 part of nucleus gracilis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30801
striatum_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23825
Sarcoma_SARC_TCGA-DX-A8BN-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Axolemma	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.703
r10 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62366
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.64
BRD-K25322420	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00329
Bone structure disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
NEIL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06388
GSE108675_3_v_0_slc1a4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.125
signal release	GO Biological Process Annotations 2015	1.0	null
superficial stratum of r2Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40492
NB10	DepMap CRISPR Gene Dependency	1.0	2.41183
Hyperglycemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
Cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Perturb_13819_KO_YBX1_SRP222969	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.35828
Wholebrain	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.32617
BRD-K16154498	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20857
KLF5_KO_GDS3509_553_mouse_ES cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Lung transplant rejection_Trachea_GSE3418	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.13448
MCAS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30236
dopaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.271256
abnormal neuromuscular synapse morphology	MPO Gene-Phenotype Associations	1.0	null
Neostriatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.207
600MPE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.913756
BRD-K94540403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31559
Lung adenocarcinoma_LUAD_TCGA-64-5815-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_1076_KO_Mr1_ERP107271	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.57689
Glycinergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.583
smooth muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.494528
496100337_HIP_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	10.0312
GSE149035_7_v_0_hepacam_human	RummaGEO Gene Perturbation Signatures	1.0	null
Pheochromocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
PMC12903665-41065_2026_637_MOESM3_ESM.pdf-1-MBD2_MBD2	Rummagene Transcription Factor Associations 2026	1.0	null
alzheimer disease specific cell type	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.532274
Floor plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.248
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05647
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.3302
BRD-K15373812	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17883
Neuromuscular junction disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
BRD-K60127720	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03934
CRCGN016_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.81052
Hirschsprung's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
CRCGN013_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8611
timedependent	GeneRIF Biological Term Annotations	1.0	null
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31593
H3K4me3_endothelial cell of umbilical vein_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Gemmule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.763
pralidoxim	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22043
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4IQ-01A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
vestibular labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.093603
SP1	JASPAR Predicted Transcription Factor Targets	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN015_MCF10A_48H:J24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.4879
Smooth endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.216
abnormal miniature endplate potential	MPO Gene-Phenotype Associations	1.0	null
MOLP8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76561
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.973714
BRD-K84235037	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19179
IKZF1-21737484-HCT116-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Dorsal striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.788
Hemispheric regions	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.18314
kyphosis	MGI Mouse Phenotype Associations 2023	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.588
diencephalon	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K09993756	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.10207
NCIH1915	CCLE Cell Line Gene CNV Profiles	1.0	1.36634
BRD-K46623934	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04453
adrenal medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.21846
positive regulation of neurotransmitter secretion	GO Biological Process Annotations 2023	1.0	null
Superior mesenteric artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.558
cerebralcortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.18356
Imago	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.527
vas deferens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.50942
Hypoglossal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.553
Long Face	DisGeNET Gene-Phenotype Associations	1.0	null
medulla oblongata	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.160043
EGR1-20690147-ERYTHROLEUKEMIA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1667
PMC9882185-media-4.xlsx-Neuron_KD-gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Absent Reflex	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K35066174	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51143
Parahippocampal region	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.071
congenital diaphragmatic hernia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180937
Generalized Hypotonia	DisGeNET Gene-Phenotype Associations	1.0	null
Larval brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.299
glial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.417718
BRD-K57443386	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.04147
glioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091795
Right colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.209
hsa-miR-125b	TargetScan Predicted Conserved microRNA Targets	1.0	0.099701
Sleep Apnea	DisGeNET Gene-Disease Associations	1.0	null
medial habenular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.914361
striatum_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.873246
CRCGN009_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.4607
presence	GeneRIF Biological Term Annotations	1.0	null
start	GeneRIF Biological Term Annotations	1.0	null
superficial stratum of r10Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.73015
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
Clathrin-mediated endocytosis	Reactome Pathways 2024	1.0	null
positive regulation of acetylcholine secretion, neurotransmission	GO Biological Process Annotations 2025	1.0	null
r6 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00541
increased acetylcholine level	MGI Mouse Phenotype Associations 2023	1.0	null
Postcentral gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.632
r2 part of the trigeminal motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40458
Vagus nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.42
ChIP_JARID2_20075857	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Organ system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
inorganic anion transport	GO Biological Process Annotations 2015	1.0	null
SAP30	ENCODE Transcription Factor Targets	1.0	null
Neuronal cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.226
transporter	GeneRIF Biological Term Annotations	1.0	null
nuclei	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-1250	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1	Rummagene Transcription Factor Associations 2026	1.0	null
lateral terminal nucleus of the accessory optic tract, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.58648
Inferior vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.63
clathrin-coated endocytic vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.917
heart muscle	HPA Tissue Protein Expression Profiles	1.0	1.16804
abnormal object recognition memory	MGI Mouse Phenotype Associations 2023	1.0	null
Poor Suck	DisGeNET Gene-Phenotype Associations	1.0	null
nucleotide-excision repair factor 1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.748
layer 1 of LOT	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.17708
CRCGN011_HEPG2_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19025
nucleus accumbens	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.385896
Cranial nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.109
superficial stratum of r8BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19598
ZNF281	ChEA Transcription Factor Targets	1.0	null
larva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.244232
Frontal pole, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32682
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_megakaryocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS 695T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.69545
Mo-B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.844
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950743
periventricular stratum of r10Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.45389
59M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.28989
abnormal behavioral response to xenobiotic	MPO Gene-Phenotype Associations	1.0	null
CRCGN015_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.79267
CRCGN017_MCF10A.TP53.M_24H:K03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.17956
adam29	GeneRIF Biological Term Annotations	1.0	null
abnormal neurotransmitter secretion	MPO Gene-Phenotype Associations	1.0	null
BRD-K36468214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38871
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hyperactive Behavior	DisGeNET Gene-Phenotype Associations	1.0	null
Neuromuscular junction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.232
seizures	MPO Gene-Phenotype Associations	1.0	null
PPFIA4	Pathway Commons Protein-Protein Interactions	1.0	null
CTCF_kidney epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Parametrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.532
H2AFZ_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Postsynaptic specialization	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.888
result	GeneRIF Biological Term Annotations	1.0	null
Brain - Hypothalamus	GTEx Tissue Gene Expression Profiles 2023	1.0	1.21319
Intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.089
BRD-K69671285	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.56853
Obstructive lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
intestinal infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.595233
Developmental and epileptic encephalopathy 85	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.731
Vanadium	CTD Gene-Chemical Interactions	1.0	null
Cerebellar Purkinje cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.477
kyphosis	MPO Gene-Phenotype Associations	1.0	null
Developmental disorder of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.08
Lung squamous cell carcinoma_LUSC_TCGA-43-7657-01A-31R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K97421379	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2375
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.934
dorsal striatum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.406694
ZFP281-18757296-E14-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.106748
BRD-K31606237	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44044
Vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.665
BRD-A07407288	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20353
leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.105561
Medulla oblongata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.875
sensory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.735147
superficial stratum of THyB-D	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31909
SNU46	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64224
preweaning lethality	MPO Gene-Phenotype Associations	1.0	null
choline	GeneRIF Biological Term Annotations	1.0	null
Cerebrovascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.795
correlates	GeneRIF Biological Term Annotations	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.02665
CJM	DepMap CRISPR Gene Dependency	1.0	3.24039
Stereocilium tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.965
Adrenocortical carcinoma_ACC_TCGA-OR-A5JZ-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_cardiac mesoderm_hg19_6	ENCODE Histone Modification Site Profiles	1.0	null
posteromedial visual area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04393
SIN3B	ChEA Transcription Factor Targets	1.0	null
MHHNB11	CCLE Cell Line Gene Expression Profiles	1.0	1.47482
cd8.Tcell	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46707
mononeuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.335412
Vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Oligodendroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.643
H3K4me3_NT2-D1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K47784292	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.14582
PMC8190596-mmc2.xlsx-RUNX1_mut-RUNX1_mut_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Staring Gaze	DisGeNET Gene-Phenotype Associations	1.0	null
Astroglial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.965
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-2.60366
H3K4me1_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Rostral ventrolateral medulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.904
FF-06-MO73_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.48005
Superior olivary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18501
BRD-K46913557	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.27314
Auditory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.134
Ascidian	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.213
Tenocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.713
Sleep disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.773
H3K4me1_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
positive regulation of amine transport	GO Biological Process Annotations 2025	1.0	null
H3K4me1_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
CRCGN009_HEPG2_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.08185
UBQLN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56421
MXI1	ENCODE Transcription Factor Targets	1.0	null
ME-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE234289_3_v_2_rfx6_human	RummaGEO Gene Perturbation Signatures	1.0	null
their	GeneRIF Biological Term Annotations	1.0	null
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
PATZ1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	316.63
Corticospinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.108
BRD-K63987422	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.75213
Hypoglossal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.26579
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.22759
GSE88819_3_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF630	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67049
Visual cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.606
CRCGN015_HEPG2_48H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.33373
inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083693
BRD-K28467941	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24208
MES-SA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table7_gnomAD_AMR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
Somatosensory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.483
clathrin-sculpted vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Piriform area	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.131
CRCGN012_HEPG2_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.10913
Fatigue	DisGeNET Gene-Phenotype Associations	1.0	null
PMC12381255-41389_2025_576_MOESM3_ESM.xlsx-Differentiated_SRCAP-1879-Gene_SRCAP	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-A32018906	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36636
Glossopharyngeal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.081
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864611
Endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CRCGN014_HEPG2_24H:D01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.04499
H3K27me3_endothelial cell of umbilical vein_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7647
frontal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11243
periventricular stratum of r9Tr	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46588
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.623
Cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.956
BRD-K14719962	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.54699
GSE181959_1_v_2_dextran_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
acetylcholine:proton antiporter activity	GO Molecular Function Annotations 2025	1.0	null
BRD-K54931539	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02801
CRCGN015_MCF10A.WT.HP_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.9802
DHX32	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31872
Plantaris muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.683
Transmission across Chemical Synapses	Reactome Pathways 2024	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03677
cholera	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23945
BRD-K33865795	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.27318
MYC_MCF-7_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE238005_0_v_3_c9orf72_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MFE280	CCLE Cell Line Gene CNV Profiles	-1.0	-2.04946
coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Kidney renal clear cell carcinoma_KIRC_TCGA-G6-A8L7-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210885_2_v_1_klf4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
BRD-K81660107	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03366
BRD-K18031793	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00603
GSE139016_3_v_2_disulfiram_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100549_FWM_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.30935
CRCGN015_HEPG2_48H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.39839
forebrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68603
Neck Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
HDAC1	ENCODE Transcription Factor Targets	1.0	null
voltage-gated sodium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.502
Chromaffin granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.523
plasma membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
H4K20me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
primary auditory cortex (core)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.20882
Frontal pole, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11054
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09429
BRD-K25351976	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23018
BRD-K83684822	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.73436
BRD-K32702774	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25183
Hypolemmal cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.302
BRD-K36347292	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08944
Rectum adenocarcinoma_READ_TCGA-AF-2692-11A-01R-A32Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RING1B-27294783-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Tetanus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
H3K27me3_bronchial epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE173873_4_v_6_stra8_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Vestibular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.666
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052618
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.711355
POLR2A_olfactory bulb_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Schizophrenia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.079
Median eminence	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.304
intermediate part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.88052
ZBTB7A_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_cardiac mesoderm_hg19_4	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K90806964	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09505
BRD-K71415389	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01241
Hematopoietic system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
SNU668	CCLE Cell Line Gene CNV Profiles	1.0	1.68506
BRD-K10416099	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29364
PMC11799530-12276_2024_1380_MOESM1_ESM.xlsx-DEG_KD_PC-Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
inner hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306805
CLPP_KO_GSE40207_382_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Hindbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.335
Iris	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.713
Waddling Gait	DisGeNET Gene-Phenotype Associations	1.0	null
Cerebellar cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.061
Exocytic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.081
mediodorsal nucleus of thalamus_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.92483
voltage-gated calcium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.212
screen	GeneRIF Biological Term Annotations	1.0	null
Mesothelioma_MESO_TCGA-LK-A4O2-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSK3A_KD_GDS4305_184_human_U937 acute myeloid leukemia cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Alzheimer Disease	DisGeNET Gene-Disease Associations	1.0	null
Atrioventricular node	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.916
H3K27me3_Fetal Heart	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Common penile artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.128
Postsynapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.227
transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
BRD-K90548911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.56988
Transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
ZNF574	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.2125
angle-closure glaucoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.78207
NCIH1155	CCLE Cell Line Gene Expression Profiles	1.0	2.4161
Adrenocortical carcinoma_ACC_TCGA-OR-A5LH-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-96	TargetScan Predicted Conserved microRNA Targets	1.0	0.828473
Joint Laxity	DisGeNET Gene-Phenotype Associations	1.0	null
Anteromedial visual area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.14793
colocalisation	GeneRIF Biological Term Annotations	1.0	null
PHF8	ENCODE Transcription Factor Targets	1.0	null
ammonium transport	GO Biological Process Annotations 2015	1.0	null
H3K4me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Sensorineural Hearing Loss (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
BRD-K13267130	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67467
Myotome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.693
cell periphery	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.431829
Muscarinic acetylcholine receptor 1 and 3 signaling pathway	PANTHER Pathways	1.0	null
CRCGN015_MCF10A_48H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.10015
pentoxyverine-4649	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
biosynthesis	Phosphosite Textmining Biological Term Annotations	1.0	null
Neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.038
A3-KAW	COSMIC Cell Line Gene Mutation Profiles	1.0	null
AA-23-FM46_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.344786
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882611
cerebral hemisphere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64106
neurotransmitter secretion	GO Biological Process Annotations 2015	1.0	null
H3K4me2_A549_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Accessory olfactory bulb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09049
superficial stratum of IC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.2747
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64095
prostate gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23176
Claustrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
Acute Myeloid Leukemia_LAML_TCGA-AB-2897-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.369747
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table5_gnomAD_SAS_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
Uterus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.929407
XPNPEP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81745
maxillary nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.493745
GSE100863,GSE100864_3_v_0_tet2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
another	GeneRIF Biological Term Annotations	1.0	null
BRD-K48634117	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09681
hypotonia-cystinuria syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
Olfactory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.504
REST	ENCODE Transcription Factor Targets	1.0	null
Scolopidium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.681
ChIP_SUZ12_18692474	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.32562
BRD-K14449601	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34599
positive regulation of long-term synaptic potentiation	GO Biological Process Annotations 2023	1.0	null
r6 part of ventral parvicellular reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.5402
olfactory bulb	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.760742
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9898
PHGDH_KO_GDS2874_125_mouse_embryonic head tissue	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
transmembrane transport	GO Biological Process Annotations 2015	1.0	null
H2AFZ_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormal metabolism	MPO Gene-Phenotype Associations	1.0	null
GSE222758_0_v_3_clofazimine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
PC-12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.974
SKMEL24	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47288
secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.362422
Insular cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.799
constipation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.278297
synaptic	Phosphosite Textmining Biological Term Annotations	1.0	null
BRD-K21897482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.73087
Parasympathetic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.155
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02755
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951099
MDAMB415	DepMap CRISPR Gene Dependency	1.0	2.67684
Dendrite terminus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.807
H3K4me2_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Respiratory Arrest	DisGeNET Gene-Phenotype Associations	1.0	null
Generalized Muscle Weakness, Ctcae	DisGeNET Gene-Phenotype Associations	1.0	null
Basal forebrain cholinergic neuron (BFCN)_Skin_Human	CellMarker Gene-Cell Type Associations	1.0	null
cerebellum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14153
BRD-K29200961	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01019
occipital lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340757
abnormal voluntary movement	MPO Gene-Phenotype Associations	1.0	null
GSE176555,GSE176556_1_v_0_acriflavine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN015_HEPG2_48H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.61322
MORC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.34197
PMC12172627-NIHMS2085635-supplement-5.xlsx-E2F1_GENIE_Results-Unnamed_1_E2F1	Rummagene Transcription Factor Associations 2026	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.421148
22RV1	DepMap CRISPR Gene Dependency	1.0	2.60387
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.703945
apoptotic	GeneRIF Biological Term Annotations	1.0	null
motor neuron disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.613574
NANOG	ChEA Transcription Factor Targets	1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.04656
CRCGN015_MCF10A_48H:J23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6068
H3K27me3_kidney epithelial cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE174522_1_v_0_spp1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Dendritic spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.692
GSE108675_2_v_1_slc1a4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Intestinal pseudo-obstruction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
Medial amygdalar nucleus, anteroventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04042
identify	GeneRIF Biological Term Annotations	1.0	null
intrinsic component of plasma membrane	GO Cellular Component Annotations 2015	1.0	null
biphasic	GeneRIF Biological Term Annotations	1.0	null
Major facilitator superfamily domain	InterPro Predicted Protein Domain Annotations	1.0	null
Ischemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.706
CRCGN015_MCF10A_48H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.27668
HEP_3B2_1-7	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE77108_6_v_7_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
superficial stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.57207
H3K27me3_fibroblast of lung_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
glans penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.358546
mediodorsal nucleus of thalamus_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0105
cerebral amyloid angiopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166319
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297447
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
ileum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.41087
GSE87615_2_v_3_ascl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
AMINOBENZOVESAMICOL	DGIdb Drug Targets 2026	1.0	13.233
LBP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.598
non-myelinating Schwann cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.577
developmental	GeneRIF Biological Term Annotations	1.0	null
CRCGN010_HEPG2_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.61308
superficial stratum of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.26296
Fourth ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.24
H3K4me3_H7_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
PPFIA1	Pathway Commons Protein-Protein Interactions	1.0	null
macroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061965
abnormal social investigation	MGI Mouse Phenotype Associations 2023	1.0	null
Blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
Granule cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.447
intermediate filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.383895
CHP-134	GDSC Cell Line Gene Expression Profiles	1.0	1.67032
exists	GeneRIF Biological Term Annotations	1.0	null
CRCGN015_HEPG2_48H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.47445
cerebral cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.64406
H3K4me1_spleen_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE101537_1_v_3_neurog3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
retrotrapezoid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78479
Spine apparatus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.127
Calyx of Held	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.308
GSE181959_3_v_2_dextran_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Cerebral cortical neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.695
OVK-18	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Copula pyramidis, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.44297
Exocytic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.907
Muscarinic acetylcholine receptor 2 and 4 signaling pathway	PANTHER Pathways	1.0	null
BRD-K26272845	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.30415
ML-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.679
Ion channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.065
TP53	JASPAR Predicted Transcription Factor Targets	1.0	null
serotonin transport	GO Biological Process Annotations 2025	1.0	null
CALR_KO_GDS3680_149_mouse_embryonic stem cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.44404
PMC8437976-41416_2021_1470_MOESM2_ESM.xls-List_of_MAF_in_SNP_Rectum-Hugo_Symbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
spanning component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.306632
Extraocular muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.272
Peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.29
Nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC10746608-427_2023_709_MOESM4_ESM.xlsx-KLF4_Targets_Enrichment-Unnamed_63_KLF4	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K10343715	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07486
Basal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.607
interstitial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.567227
CGRP receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.653
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung squamous cell carcinoma_LUSC_TCGA-21-5782-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ChIP_KLF4_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Spinal root	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.067
striatum_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.959516
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.811891
CRCGN009_HEPG2_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.82867
Germ cell cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.242
SPATA20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96548
BZRAP1	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K15928912	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86912
Autoimmune disease of the nervous system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.544
Vestibular sensory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.739
medial part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40424
forebrain	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Pick's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
Traumatic brain injury	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.654
Arthrogryposis	DisGeNET Gene-Disease Associations	1.0	null
contrasting	GeneRIF Biological Term Annotations	1.0	null
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.26386
NSC-34 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.126
abnormal muscle tone	MPO Gene-Phenotype Associations	1.0	null
Nucleus lentiformis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.189
cation transport	GO Biological Process Annotations 2015	1.0	null
Pinealocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.811
BRD-K63188051	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0339
CRCGN016_MCF10A.WT.HP_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.42585
QB-42-MC63_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.601985
pc-12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.18912
Byzanthine Arch Palate	DisGeNET Gene-Disease Associations	1.0	null
BRD-K03624299	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45076
BRD-K72827150	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04662
GSE88819_3_v_12_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Pars reticulata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.406
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A49H-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
increased neuron number	MPO Gene-Phenotype Associations	1.0	null
corpus cavernosum clitoridis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.416195
Paramedian lobule, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.17133
BRD-K22189453	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10087
Sublaterodorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12323
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
Nicotine dependence	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
Membrane coat	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.966793
CRCGN015_MCF10A_48H:H03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.45151
Congestive Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
BE-28-WW67_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.908755
Respiratory Failure	DisGeNET Gene-Disease Associations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4813-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL62	DepMap CRISPR Gene Dependency	1.0	2.71286
H3K27me3_cardiac mesoderm_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cranial nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.26352
BRD-K42363982	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04884
Autosomal dominant nonsyndromic deafness 33	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
H3K4me3_G1E-ER4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC9387164-Table_2.XLSX-Sheet1-CLOCK_CLOCK	Rummagene Transcription Factor Associations 2026	1.0	null
Forebrain	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K12955049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.61911
LF-94-HB11_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.756293
Axon hillock	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.718
cytoplasmic part	GO Cellular Component Annotations 2015	1.0	null
K-562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08753
Hereditary neuropathy with liability to pressure palsies	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.292
amorolfine	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	5.6474
Protocerebrum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.56
Temporal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.485
Golgi-associated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
clathrin-coated endocytic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
PMC10794847-mmc3.xlsx-PBRM1_KD_down-Table_S2_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_differentiation_state_Related_to_Figure_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
CTCF_SK-N-SH_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Tongue muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
CLN8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61648
Inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.662
BRD-K78003637	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.40735
H3K27me3_fibroblast of lung_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K11979048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34571
BRD-K45037973	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17959
BRD-K33653343	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55732
BRD-K28579021	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00358
Ileus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
cytoplasmic vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Lung squamous cell carcinoma_LUSC_TCGA-63-5128-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Neuron projection terminus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
BRD-K58688519	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.62508
right colon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.315498
superficial stratum of CoPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.58885
Heart Failure	DisGeNET Gene-Disease Associations	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
wf2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.8
thus	GeneRIF Biological Term Annotations	1.0	null
cad cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.350743
DMS79	CCLE Cell Line Gene Expression Profiles	1.0	1.44732
phthalylsulfathiazole-5614	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Midbrain, sensory related	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01157
Myelencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.88
abnormal homeostasis	MPO Gene-Phenotype Associations	1.0	null
SNU449	CCLE Cell Line Gene CNV Profiles	1.0	1.61525
Nucleus accumbens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.848
BRD-K29838935	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0665
Amyotrophic lateral sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.177
HS936T	DepMap CRISPR Gene Dependency	1.0	2.44349
PMC10335677-pbio.3002161.s009.xls-MLL_siRNA_DEGs-Ensembl_ID_KMT2A	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_WERI-Rb-1_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Perturb_13677_KD_DHX9_SRP018815	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.6118
H3K4me3_embryonic fibroblast_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EP400	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73985
BRD-K55972185	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14049
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.415
Cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.623
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-0.950425
Depression_Cerebral cortex_GSE12654	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.48424
BRD-K31275250	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0859
Zfp961	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.5677
neurological	GAD High Level Gene-Disease Associations	1.0	0.298214
H3K27me3_cardiac mesoderm_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Lung adenocarcinoma_LUAD_TCGA-53-7624-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU5F1-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
bowel dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.272597
abnormal skeleton morphology	MPO Gene-Phenotype Associations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A299-01A-21R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5KV-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Coelomocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.68
GABA-A receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.906
SW 620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20316
lateral superior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.72597
Outer ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.543
serotonin-activated cation-selective channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.283
BRD-K71647210	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11541
external part of AOV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27675
ZFP42-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
BRD-K68470956	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40067
Anterior hypothalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.6
Vas deferens ampulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.537
acetylcholine uptake	GO Biological Process Annotations 2023	1.0	null
Cholinergic synapse	KEGG Pathways 2026	1.0	null
Soft body part	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.326
BRD-K40228963	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25951
positive regulation of cellular component organization	GO Biological Process Annotations 2025	1.0	null
BRD-K39649723	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41582
Site of polarized growth	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.372
Optic cup	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.964
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49863
KLF10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	182.659
HUG1N	CCLE Cell Line Gene CNV Profiles	1.0	1.69764
SH3BGRL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.32959
496100314_HIP_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.13609
Hippocampal pyramidal layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.224
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061687
Distal axon	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
Ophthalmic nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.632
limbic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.48504
ANKEF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35823
hsa-miR-3944-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.181316
Endomembrane system	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.512
hippocampus (hippocampal formation)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17362
cerebellar cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.596058
Easy Fatigability	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal muscle morphology	MPO Gene-Phenotype Associations	1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.586
Skeletal muscle fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
amyloidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.111416
BRD-K04488512	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48542
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.021
MTF2	ChEA Transcription Factor Targets	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NF-A4WX-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Midbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.439
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A5VJ-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal spine curvature	MPO Gene-Phenotype Associations	1.0	null
PMC9396374-Table_4.XLSX-AR_related_genes_from_GeneCards-gene_symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Tail bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.17
BRD-K68300789	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.6687
Declive (VI), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11149
nerve plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.560847
r11 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.18113
Presynaptic periactive zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.723
Barrington's nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02159
KBTBD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.60327
H3K4me3_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
STX1A	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-P5-A5F6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posteroventral (inferior) parietal cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.80031
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
synaptic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.480855
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
brain cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.297447
clathrin adaptor complex	GO Cellular Component Annotations 2023	1.0	null
NCIH1341	CCLE Cell Line Gene Expression Profiles	1.0	1.75403
ChIP_H3K27me3_17603471_mouseESC	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Congenital myasthenic syndrome 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.192
DBH_KO_GDS4324_362_mouse_Embryonic heart  E10.5	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
spinal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.223662
Colon transversum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.535
MCF12A	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.837924
Perturb_1061_KO_Esr1_SRP087718	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-2.43115
Lacrimal gland acinar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.53
ChIP_NANOG_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Posterior parietal association areas, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.26521
Motor neuron_Embryo_Mouse	CellMarker Gene-Cell Type Associations	1.0	null
Carotid artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.396
integral component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.277774
protein-transport	Phosphosite Textmining Biological Term Annotations	1.0	null
Infralimbic cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.196
increased vertical activity	MPO Gene-Phenotype Associations	1.0	null
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Glandular stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.891
ChIP_K27me3_17603471_mouseMEF	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Carcinoma, Hepatocellular	CTD Gene-Disease Associations	1.0	1.07589
BRD-K53936012	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02951
BRD-K42671829	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02288
Superior olivary complex, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.97626
Limb-Girdle Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
Axon collateral	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.026
transgenic	GeneRIF Biological Term Annotations	1.0	null
ZBTB7A	ENCODE Transcription Factor Targets	1.0	null
serotonin uptake	GO Biological Process Annotations 2025	1.0	null
vestibular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096264
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
Neuro-2a cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.18
CTCF_embryonic fibroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Accessory olfactory bulb, mitral layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31794
PHF8_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
UACC893	DepMap CRISPR Gene Dependency	1.0	2.46298
Enteroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.974
neck	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091182
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.51581
Musculoskeletal system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Iris sphincter muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.981
Sarcoma_SARC_TCGA-K1-A6RU-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.1667
Pulvinar	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.618
Granular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.351
Riley-Day syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
H3K27me3_mononuclear cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.129971
Neuronal System	Reactome Pathways 2024	1.0	null
Polyneuropathy, Motor	DisGeNET Gene-Disease Associations	1.0	null
enteric plexus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.206
corpus cavernosum penis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399114
hippocampus (hippocampal formation)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.00583
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.968
Abdominal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.645
periventricular stratum of r9Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06135
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.28213
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table3_WBBC_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
Tegmentum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.228
PMC7064337-elife-51373-supp1.xlsx-EZH2_targets_shPHF19-List_of_2084_genes_marked_by_EZH2_ChIPseq_after_PHF19_KD_shPHF19_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.951099
JUND-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
CRCGN009_HEPG2_24H:O19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.49284
[<sup>123</sup>I]iodobenzovesamicol	Guide to Pharmacology Chemical Ligands of Receptors	1.0	null
X-linked properdin deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
abnormal behavior	MPO Gene-Phenotype Associations	1.0	null
BRD-K68497273	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2335
SLU7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10788
liminal part of r2 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26936
cytoplasmic vesicle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Nervous system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.528719
HDAC1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
import into cell	GO Biological Process Annotations 2023	1.0	null
pituitary	GTEx Tissue Gene Expression Profiles	1.0	1.1435
Dorsum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.504
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3664
CRCGN008_HEPG2_24H:C22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.09335
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.77082
bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.596012
MKN74	DepMap CRISPR Gene Dependency	1.0	2.20743
SNU-398	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78145
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.617796
GSE122990,GSE123061_0_v_1_urod_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
spanning component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.306632
GSE68156_3_v_4_dextran_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN011_HEPG2_24H:F11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2627
Progressive bulbar palsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
UPCISCC040	DepMap CRISPR Gene Dependency	1.0	2.88274
Chromosomal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.475
H3K4me3_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
neuroepithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.399871
BRD-K08107521	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13594
MOLT-13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.639619
BRD-K40917447	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1084
proton transmembrane transporter activity	GO Molecular Function Annotations 2025	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.964631
Congenital nervous system abnormality	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
Thalamus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.888
diaphragm disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.136292
Ebolavirus(EBOV)_7day_Splenocytes_19683682_GSE17509	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.31735
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
C3A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01799
Cerebral white matter	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.853
JURKAT	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9013
pons	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.366007
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.608
CRCGN014_HEPG2_3H:K11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07013
H3K36me3_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
abnormal skeletal muscle morphology	MGI Mouse Phenotype Associations 2023	1.0	null
SUZ12-18692474-MEFS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
H3K4me1_small intestine_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
transporter activity	GO Molecular Function Annotations 2015	1.0	null
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.587
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.263327
Arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
Medial entorhinal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.641
Familial infantile myasthenia	ClinVar Gene-Phenotype Associations 2025	1.0	null
Meynert's basal nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.413
clathrin-coated vesicle membrane	GO Cellular Component Annotations 2025	1.0	null
amacrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.815233
BRD-K82432417	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14386
TC32	CCLE Cell Line Gene Expression Profiles	1.0	1.3754
obsessive-compulsive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.507
terminal bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.11327
decreased	GeneRIF Biological Term Annotations	1.0	null
clathrin-sculpted acetylcholine transport vesicle	GO Cellular Component Annotations 2025	1.0	null
Subarachnoid space	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.676
Anal canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.75
Supraoptic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.926
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A1MK-01A-11R-A14Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
medial septum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40478
YH13	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57713
synaptic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.96145
TAL1	ENCODE Transcription Factor Targets	1.0	null
PMC12048643-44318_2025_409_MOESM3_ESM.xlsx-regulonTargets-ALX1_ALX1	Rummagene Transcription Factor Associations 2026	1.0	null
Ptosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.715
SUP-T1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dorsolateral prefrontal cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04709
Intestinal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.469
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
H3K4me3_WERI-Rb-1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K12836153	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39853
Amygdala	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.131
MM426	DepMap CRISPR Gene Dependency	1.0	2.98358
DJ-1_KD_GDS3750_373_human_SH-SY5Y	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
abnormal synaptic acetylcholine release	MPO Gene-Phenotype Associations	1.0	null
Glycogen granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.585
Psychotic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.079
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.182957
inorganic anion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
H3K27me3_H1 BMP4 Derived Mesendoderm Cultured Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Hypertrophic pyloric stenosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
BRD-K20428189	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83557
olfactorybulb	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.18118
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A700-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.285316
BRD-K18519876	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22459
Myasthenic Syndrome	DisGeNET Gene-Disease Associations	1.0	null
PMC10746608-427_2023_709_MOESM4_ESM.xlsx-KLF4_Targets_Enrichment-Unnamed_115_KLF4	Rummagene Transcription Factor Associations 2026	1.0	null
Botulism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
BRD-K23860926	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37847
Acetylcholine Neurotransmitter Release Cycle	Reactome Pathways 2024	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590839
BRD-K91564773	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4009
HuCCT1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.71532
establishment of localization	GO Biological Process Annotations 2015	1.0	null
Perturb_4549_KD_Hdac6_SRP126769	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-1.39598
GSE195559_3_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PRDM9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	383.933
Frontotemporal dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.559
abnormal somatic nervous system morphology	MPO Gene-Phenotype Associations	1.0	null
BRD-K94301203	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0363
BRD-K48113764	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.33374
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
METAP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69114
Human - Fetal Development - L2 - Lung-Visceral neurons	HuBMAP Azimuth Cell Type Annotations	1.0	null
Colon sigmoideum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.566
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060552
WM115	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41238
DU145	DepMap CRISPR Gene Dependency	1.0	2.90041
Carotid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.633
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	126.821
Telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.734
receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048207
U87MG	CCLE Cell Line Gene CNV Profiles	1.0	1.63507
Right atrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.358
snps	GeneRIF Biological Term Annotations	1.0	null
Myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.591
Clathrin coat of coated pit	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
NCIH1694	CCLE Cell Line Gene Expression Profiles	1.0	1.62757
neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.39127
Ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.787
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59798
Clathrin coat of trans-Golgi network vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
MYCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.25429
abnormal pns synaptic transmission	MPO Gene-Phenotype Associations	1.0	null
AOB, outer plexiform layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07224
FTC133	CCLE Cell Line Gene Expression Profiles	1.0	1.6825
BRD-K25933460	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00318
Anterior olfactory nucleus, external part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.32578
cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.337373
H3K4me3_brain_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
nucleus lentiformis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.646505
TEAD4_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
mantle zone of r9Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.07301
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.0861
Biceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.676
parkinson's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.535409
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.662703
BRD-K28107038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11606
BRD-K68333644	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07441
CRCGN015_HEPG2_48H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.20271
sorting	Phosphosite Textmining Biological Term Annotations	1.0	null
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057126
H3K4me3_SK-N-MC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K23793049	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37551
demonstrated	GeneRIF Biological Term Annotations	1.0	null
Neuroendocrine cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.864
DU145	CCLE Cell Line Gene Expression Profiles	-1.0	-1.56141
BRD-K36736230	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18387
three	GeneRIF Biological Term Annotations	1.0	null
superficial stratum of JcPL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.2809
Lambert-Eaton Myasthenic Syndrome	DisGeNET Gene-Disease Associations	1.0	null
SRD5A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.0587
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.351
neurotransmitter transport	GO Biological Process Annotations 2025	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54814
Synaptic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.91
Tongue epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.226
Synaptic cleft	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.534
Sodium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.579
mRNA_DLX3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
TAL1_erythroblast_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K23553911	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34739
Avian pallium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.141
LMSU	DepMap CRISPR Gene Dependency	1.0	6.47062
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
BRD-K38904629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.46089
BRD-K87742870	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08568
PMC3870072__F4	PFOCR Pathway Figure Associations 2024	1.0	null
skeletal muscle atrophy	MGI Mouse Phenotype Associations 2023	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.35232
Anteromedial visual area, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50377
Kyphosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
Tracheal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.021
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
AB-12-IS33_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.03313
primary somatosensory cortex (area S1, areas 3,1,2)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0795
AA-99-HO76_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.91336
Copula pyramidis, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.90574
abnormal vertical activity	MPO Gene-Phenotype Associations	1.0	null
GSE210990,GSE211030_3_v_2_kmt2d_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Microcephaly	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.034
GSE174701_4_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sarcoma_SARC_TCGA-DX-A2J1-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K79213964	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.74617
Functional gastric disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.472
abnormal seizure response to pharmacological agent	MPO Gene-Phenotype Associations	1.0	null
Submandibular ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.38
BRD-K34343777	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37411
Field CA2, pyramidal layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.2809
Urethra	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.712
muscle phenotype	MPO Gene-Phenotype Associations	1.0	null
BRD-K10696228	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51581
PKBalpha_KO_GDS1784_195_mouse_Embryonic fibroblasts (MEFs) - 6h	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Primary angle-closure glaucoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
BRD-A97608543	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17476
Gill arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.799
H3K4me1_megakaryocyte_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
sympathetic ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.906682
GSE210682_0_v_3_methadone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nicotinic acetylcholine receptor signaling pathway	PANTHER Pathways	1.0	null
Enteric nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.176
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Eye	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.031
Phrenic nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.63
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Cardia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
Hinge joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.713
Cell body membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.648
Lung squamous cell carcinoma_LUSC_TCGA-66-2790-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
glutamic	Phosphosite Textmining Biological Term Annotations	1.0	null
Fiber	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.561
Cornu ammonis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.991
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.81479
histamine-gated chloride channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.362
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.32145
Corpus callosum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.423
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.59572
Terminal bouton	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CRCGN015_MCF10A_48H:H12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.19243
parietal lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.792709
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1649
BRD-K07588901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.18407
Autonomic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.558
spinal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.259929
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.343
H3K27me3_thymus_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Ptosis	DisGeNET Gene-Disease Associations	1.0	null
BRD-K19066553	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53113
VPS9D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75877
striatum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04931
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.318
hsa-miR-4319	TargetScan Predicted Conserved microRNA Targets	1.0	0.131849
BRD-K14139166	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.54245
superficial stratum of r5Lim	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.66385
MICOS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.68
r10 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.44768
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.069
clathrin-coated vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.352901
GSE242290_1_v_7_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
AMPA glutamate receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.734
BRD-K67194214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.71269
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.950013
cytoplasmic	Phosphosite Textmining Biological Term Annotations	1.0	null
Vestibulum vaginae	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
infralimbic cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.356686
cerebellar cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.42165
Myocardial infarction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
increased motor neuron number	MGI Mouse Phenotype Associations 2023	1.0	null
H3K9me3_G1E-ER4_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.192031
H3K4me1_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
cyanosis	MPO Gene-Phenotype Associations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A3DM-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
single-organism process	GO Biological Process Annotations 2015	1.0	null
anterior horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.33636
CRCGN012_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5088
Gastrointestinal smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
Circular smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
phacogenic glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.319363
Glutamatergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.984
gut	GeneRIF Biological Term Annotations	1.0	null
Laryngeal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.921
pheochromocytoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.22113
PMC9508118-42003_2022_3857_MOESM6_ESM.xlsx-h-Classification_of_camel_SON_basal_genes_-_transporters_SON	Rummagene Transcription Factor Associations 2026	1.0	null
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.525955
BRD-K68312794	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01048
Uterine Carcinosarcoma_UCS_TCGA-NA-A5I1-01A-21R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE172016_2_v_5_paclitaxel_human	RummaGEO Drug Perturbation Signatures	-1.0	null
superior periolivary nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.46478
anterograde trans-synaptic signaling	GO Biological Process Annotations 2025	1.0	null
NCIH650	DepMap CRISPR Gene Dependency	1.0	2.06087
transport vesicle membrane	GO Cellular Component Annotations 2015	1.0	null
Rectum adenocarcinoma_READ_TCGA-DT-5265-01A-21R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.1267
H3K4me1_megakaryocyte_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
secretion by cell	GO Biological Process Annotations 2015	1.0	null
MEF2A_KD_GDS4759_340_mouse_E16 primary cortical neuron cultures	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
vallate papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.340757
GSE65617_5_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Face	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
BRD-K39400123	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33622
EPOP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9123
abnormal motor capabilities/coordination/movement	MPO Gene-Phenotype Associations	1.0	null
Perturb_13950_KD_IGF2BP1_SRP291708	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-11.1162
CTCF_brain_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
hippocampus (hippocampal formation)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02661
coated vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.7832
Medial geniculate body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.159
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7014
Learning Disorders	CTD Gene-Disease Associations	1.0	1.08975
H3K4me3_heart_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
clathrin-sculpted acetylcholine transport vesicle	GO Cellular Component Annotations 2023	1.0	null
AOB, internal plexiform layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19497
Diaphragm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
protein-kinase-c	Phosphosite Textmining Biological Term Annotations	1.0	null
inhibitory synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.41143
Tauopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.569
Endochondral bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.734
midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.116562
NLGN3_KD_GDS4759_336_mouse_E16 primary cortical neuron cultures	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
synaptic membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.200663
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.6938
neurotransmitter transport	GO Biological Process Annotations 2023	1.0	null
thalamus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
tongue epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.530693
neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.17078
CRCGN009_HEPG2_24H:L13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.3294
SKNFI	CCLE Cell Line Gene Expression Profiles	1.0	2.02288
abnormal synaptic acetylcholine release	MGI Mouse Phenotype Associations 2023	1.0	null
BRD-K33102216	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.56273
r9 part of parvocellular medial vestibular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06108
SkeletalMuscle	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.0547
BRD-K34624391	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00412
Rhabdomere	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.62
mRNA_FEM1B_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	-1.0	null
Blepharoptosis	DisGeNET Gene-Disease Associations	1.0	null
Dopaminergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.036
alzheimer's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45748
mononeuritis of upper limb and mononeuritis multiplex	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.585887
Motor Delay	DisGeNET Gene-Phenotype Associations	1.0	null
H3K4me3_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
laterodorsal tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21226
olfactory tubercle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.861785
BRD-K35943892	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09475
JcP contribution to LTL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.2809
carrier-proteins	Phosphosite Textmining Biological Term Annotations	1.0	null
MTF2-20144788-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-56-8304-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bladder wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.35586
Muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.441
neurofilament cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.543587
Synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.125
Astroglia	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.984
Substantia nigra	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.997
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
dorsolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27343
cell body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.4288
medial ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07883
BRD-K34620971	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36093
abnormal skeletal muscle mass	MPO Gene-Phenotype Associations	1.0	null
Anterior horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.424
Intrinsic component of mitochondrial membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.016
individuals	GeneRIF Biological Term Annotations	1.0	null
Stomach smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.274
hippocampus (hippocampal formation)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.899365
CAPRIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06399
AB-97-BI36_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.626388
diabetic autonomic neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.430768
BRD-K70618663	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.30587
vaginal smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.859258
Impaired Cognition	DisGeNET Gene-Disease Associations	1.0	null
GSE242333_0_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE150134_1_v_0_scn5a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE136232,GSE136234_0_v_1_zpbp2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
OLIG2-26023283-AINV15-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Field CA2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09325
cerebral lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.56038
Gut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.896
ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
lung cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064004
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062248
GSE147056_2_v_1_actl6b_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.059355
neuron projection terminus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.4757
GSE232218_1_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
CTCF_ES-Bruce4_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
8505C	CCLE Cell Line Gene Expression Profiles	-1.0	-1.597
Parkinsonism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.646
Synaptic vesicle pathway	WikiPathways Pathways 2024	1.0	null
integral component of plasma membrane	GO Cellular Component Annotations 2015	1.0	null
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
Gastroparesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.516
skeleton phenotype	MPO Gene-Phenotype Associations	1.0	null
uroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.604904
GSE77108_8_v_7_saha_human	RummaGEO Drug Perturbation Signatures	1.0	null
Asthma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.345
clathrin-coated vesicle membrane	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
cytoplasmic vesicle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.171673
Sympathetic ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.124
Field CA2, stratum lacunosum-moleculare	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19301
Membrane Trafficking	Reactome Pathways 2024	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.701899
abnormal spinal cord grey matter morphology	MPO Gene-Phenotype Associations	1.0	null
ventromedial hypothalamic nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277549
Depressive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.205
EFO-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
muscular coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.671285
SW948	DepMap CRISPR Gene Dependency	1.0	2.4803
Anterior olfactory nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.861
YAMATO	DepMap CRISPR Gene Dependency	1.0	4.17906
NCIH23	CCLE Cell Line Gene Expression Profiles	1.0	1.49879
CRCGN015_HEPG2_48H:L02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.40113
nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
liminal part of the r6 alar plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.69434
intrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.108125
BRD-K64571715	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.94865
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
GSE205687_1_v_0_mta1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
vesicular	GeneRIF Biological Term Annotations	1.0	null
Ulnar nerve lesion	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.61
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
inferolateral temporal cortex (area TEv, area 20)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.41616
ChIP_K27me3_17603471_mouseNPC	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Perturb_9393_KD_RAD21_SRP071219	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-10.5415
EZH2_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
r10 part of solitary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.45389
BRD-K15282144	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07678
H3K9me3_erythroblast_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Field CA2, stratum oriens	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05081
H3K4me3_BE2C_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Median nucleus of thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.256
Primary somatosensory area, lower limb, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03193
CRCGN016_MCF10A.TP53.M_24H:K05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	10.0
uterine horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.415814
BRD-K35133923	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4811
integrin alpha7-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.323075
APECED - Autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy_Thymic epithelial cell_GSE85	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.84599
BRD-K10638173	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.92895
secretory	Phosphosite Textmining Biological Term Annotations	1.0	null
abnormal grip strength	MPO Gene-Phenotype Associations	1.0	null
ZNF610	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.412
Gastroesophageal Reflux Disease	DisGeNET Gene-Disease Associations	1.0	null
lung cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060954
Hypothalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.036
SNU-407	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Lewy body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.56
Catecholaminergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.785
METRNL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11368
BRD-K30964167	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01742
interstitial cystitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.16933
REST-21632747-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Gilles de la Tourette syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
Ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.689
HS939T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70835
PMC5384880__F5	PFOCR Pathway Figure Associations 2024	1.0	null
ECC10	CCLE Cell Line Gene Expression Profiles	-1.0	-1.65743
Rubrospinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.695
Generalized Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.636315
saturation	GeneRIF Biological Term Annotations	1.0	null
Locus ceruleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.985
Serotonin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.587
Excitatory neuromuscular junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.886
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLP-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.84686
r8 part of inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.26622
active monoatomic ion transmembrane transporter activity	GO Molecular Function Annotations 2023	1.0	null
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.7489
CRCGN010_HEPG2_24H:C19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.16162
REST_ECC-1_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SA1-27219007-CHIP-SEQ-ERYTHROID-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-4746-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.49473
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49583
Superior olivary complex, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.78349
BRD-K69659917	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.74837
BRD-K06550516	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64265
inorganic cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
gamma-motoneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.419
Accessory facial motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.66385
BRD-K42679315	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43428
abnormal motor neuron morphology	MPO Gene-Phenotype Associations	1.0	null
BRD-K75807957	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10589
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.7953
Nerve ring	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.711
CRCGN015_MCF10A_48H:P05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.91033
H3K27me3_CD14-positive monocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
transport	GO Biological Process Annotations 2015	1.0	null
ZNF263	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.5662
ammonium transmembrane transport	GO Biological Process Annotations 2015	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.09391
glutamate	Phosphosite Textmining Biological Term Annotations	1.0	null
diagonal band	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.835318
H3K4me3_G1E_mm9_3	ENCODE Histone Modification Site Profiles	1.0	null
Primary dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.71
anterior (rostral) cingulate (medial prefrontal) cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0672
Disease of cellular proliferation	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
lateral part of r10B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.16451
CRCGN017_MCF10A.WT.HP_24H:N16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.33725
FTC133	DepMap CRISPR Gene Dependency	1.0	4.03881
trochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.27106
bronchogenic carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070173
Medial mammillary nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.092
H3K4me3_H7_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal locomotor activation	MPO Gene-Phenotype Associations	1.0	null
Glutaminase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.936
muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.044803
H3K4me3_Panc1_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
Tibialis anterior	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.719
BRD-K76691746	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.87214
SF172	DepMap CRISPR Gene Dependency	1.0	2.36165
H3K27me3_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88251
Kenyon cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.032
nucleus subcoeruleus, r1 part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.09772
H3K4me3_HEK293_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
abnormal endplate potential	MGI Mouse Phenotype Associations 2023	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Congenital Myasthenic Syndromes	DisGeNET Gene-Disease Associations	1.0	null
CRCGN008_HEPG2_24H:P15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07045
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A4BA-01A-21R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN014_HEPG2_24H:E01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04216
BRD-K88542817	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23006
BT474	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.12895
HSC1	DepMap CRISPR Gene Dependency	1.0	2.47167
organelle part	GO Cellular Component Annotations 2015	1.0	null
BRD-K09337184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.4595
H3K27me3_cardiac mesoderm_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Interneuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.786
suboptic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.92942
Ocellus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.406
Cul4-RING E3 ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.399
PMC10679653-mmc3.xlsx-ISL1_KO_Markers-Unnamed_0_ISL1	Rummagene Transcription Factor Associations 2026	1.0	null
SUZ12	ChEA Transcription Factor Targets	1.0	null
Type II terminal bouton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.296
Fetallung	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.87881
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55148
brain	GTEx Tissue Gene Expression Profiles	1.0	0.903513
Somatoform disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.072
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0795
r10 part of nucleus gracilis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.31723
Coronary artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.202
BRD-K81318113	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.90171
PTPRS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14639
primary visual cortex (striate cortex, area V1/17)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.09345
Bone inflammation disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
Amyotrophic lateral sclerosis type 19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.36
colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.351187
BRD-K77144444	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0139
neuron projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.40298
Mental Deterioration	DisGeNET Gene-Phenotype Associations	1.0	null
Body wall muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.67
medial subhabenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12043
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VG-01A-31R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.18568
H3K4me3_Neurosphere Cultured Cells Ganglionic Eminence Derived	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.00673
BRD-K43634429	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02213
PMC11903305-41586_2024_8507_MOESM3_ESM.xlsx-Table_S1_MAF-Hugo_Symbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
posteromedial visual area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.83086
Gap junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.657
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
BRD-K02087489	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67438
Achalasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.334
ME-31-RM40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.38754
neonatal lethality	MPO Gene-Phenotype Associations	1.0	null
hilus of the DG	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01076
Olfactory lobe	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.097
Focal hand dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.068
GSE225901_2_v_3_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ulnar nerve lesion	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.36291
brownfat	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.881939
Nasal Regurgitation	DisGeNET Gene-Phenotype Associations	1.0	null
UMUC13	DepMap CRISPR Gene Dependency	1.0	3.8895
Cholinergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.496
Leg muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.853
Secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.031
H3K4me1_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Stereocilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.753
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
metencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.940925
Perturb_1075_KO_Il17a_ERP107271	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	3.90349
ChIP_POU5F1_18358816	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29353
Emg: Myopathic Abnormalities	DisGeNET Gene-Phenotype Associations	1.0	null
abnormal skeletal muscle fiber size	MPO Gene-Phenotype Associations	1.0	null
Liver	GTEx Tissue Gene Expression Profiles 2023	1.0	3.26989
increased susceptibility to pharmacologically induced seizures	MPO Gene-Phenotype Associations	1.0	null
non-neuronal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03829
Plasma membrane protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
E2F1_KD_GDS4094_446_mouse_Mammary tumors	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
thalamus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.905831
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05882
H3K9me3_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
GSE148692,GSE148695_5_v_6_satb2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
H3K27me3_myocyte_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
raphe nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.333396
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
Congenital Pectus Carinatum	DisGeNET Gene-Disease Associations	1.0	null
Muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.598
EGR1	ChEA Transcription Factor Targets	1.0	null
Pancreatic alpha cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.601
habenula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10402
GSE226316_3_v_2_tead2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
23132-87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
chemdependency	GAD High Level Gene-Disease Associations	1.0	0.293278
medrysone-4727	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE262134_0_v_1_dnajc12_human	RummaGEO Gene Perturbation Signatures	1.0	null
Immune system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
HT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43596
KE39	DepMap CRISPR Gene Dependency	1.0	2.19787
Gastric ulcer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.645
telencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.63456
Outer plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.387
skeletal muscle atrophy	MPO Gene-Phenotype Associations	1.0	null
H3K4me1_cortical plate_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Sympathetic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.217
AC-43-ZC52_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.09563
FD-59-TC81_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.61644
Superior cervical ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.912
PC-3	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
LS-180	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K58028568	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29508
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.07258
Prostate adenocarcinoma_PRAD_TCGA-VN-A88K-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
p1294	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.973
intermediate stratum of r10BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.61227
mp10	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.161
Posterior adductor muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
axons	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-D6-6826-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Maxillary nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.034
GSE227891_5_v_0_ethanol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
ACCMESO1	CCLE Cell Line Gene Expression Profiles	1.0	1.9571
chronic fatigue syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352659
BRD-K28795679	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41311
inorganic anion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
Intracellular vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.62
gill	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.178039
BRD-K08881846	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.40108
Neuronal cell body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.316
PHF8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC7592539-12885_2020_7456_MOESM4_ESM.xlsx-Sup_TableS3_LMS_del_genes_conf-10q22_1_TP63	Rummagene Transcription Factor Associations 2026	1.0	null
H3K4me3_cardiac mesoderm_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
Hodgkin's lymphoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
Esotropia	DisGeNET Gene-Disease Associations	1.0	null
Head	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.806
striatum_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.959767
multiple	GeneRIF Biological Term Annotations	1.0	null
Purkinje layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
WDR37	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96508
Parallel fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.891
abnormal skeletal muscle morphology	MPO Gene-Phenotype Associations	1.0	null
GSE229978_4_v_1_morphine_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Gill	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.337
any	GeneRIF Biological Term Annotations	1.0	null
SLC38A5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31017
INA complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.826
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4991
Midbody	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.078
CRCGN015_HEPG2_48H:P05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.5523
CTCF_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
adrenal gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.981953
KLF4-18358816-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
4-aminobutyrate transaminase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.044
CRCGN010_HEPG2_24H:C20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.76534
SUZ12-18692474-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
parasympathetic nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.604904
bound	GeneRIF Biological Term Annotations	1.0	null
AP-2 adaptor complex	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Superior vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
CHD2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
GSE189653,GSE203344_2_v_1_fluoxetine_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
Anterior visceral endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.896
BCOR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.76832
Nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.039
Narcolepsy-Cataplexy Syndrome	DisGeNET Gene-Disease Associations	1.0	null
Cortical amygdalar area, posterior part, lateral zone, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09325
ES5	DepMap CRISPR Gene Dependency	1.0	2.26508
tear gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.680656
E2F6	ENCODE Transcription Factor Targets	1.0	null
BRD-K27236794	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.05119
Rootlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.918
BRD-K96448434	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06734
skeletal muscle fiber atrophy	MGI Mouse Phenotype Associations 2023	1.0	null
H3K9me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K35527855	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0264
psychotic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.633563
Tear gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
Serotonergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.073
encephalitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.173314
NANOG-18358816-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
focal epilepsy	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.197742
gave	GeneRIF Biological Term Annotations	1.0	null
endomembrane system	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
Ataxia	DisGeNET Gene-Phenotype Associations	1.0	null
Neuron projection cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.245
Cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.601
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6951-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32794
dorsal nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.71009
H3K27me3_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Internal plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.175
BRD-K93774122	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69493
Cortical amygdalar area, posterior part, medial zone, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.15957
ZB-16-BR73_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.214809
LTBR_INHIBITION - 1 Day_GDS2004_733_mouse_Lymph nodes  (MG-430A)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
spinalcordupper	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
CRCGN015_HEPG2_48H:G05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.51308
H3K27me3_C2C12_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Retina	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.927
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
Sarcoma_SARC_TCGA-DX-A7EI-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hematologic cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.264
PC3	CCLE Cell Line Gene CNV Profiles	1.0	2.71551
axon part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.37464
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Field CA3, stratum pyramidale	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12162
ASPC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.864611
Head and Neck squamous cell carcinoma_HNSC_TCGA-UF-A71A-01A-22R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cognition Disorders	CTD Gene-Disease Associations	1.0	1.1908
Tailbud stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.931
BRD-K73574487	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09029
GSE100528_1_v_0_mettl3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Serotonergic synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.751
EBC1	DepMap CRISPR Gene Dependency	1.0	2.00421
Visceral mass	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.857
AR	ChEA Transcription Factor Targets	1.0	null
AP-2 adaptor complex	GO Cellular Component Annotations 2023	1.0	null
Muscle Weakness	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K29420358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23869
Retrosplenial region	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.073
dissociation	GeneRIF Biological Term Annotations	1.0	null
cell communication	GO Biological Process Annotations 2015	1.0	null
SKMM2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61014
striatum_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25357
CNTNAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44786
ESS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
APUD cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.972
Hereditary ataxia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.012
TEX15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.41595
H3K9me3_astrocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SNX12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86638
CTCF_keratinocyte_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
neuromuscular junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.19057
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Hmgn1_KO_GDS5010_405_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Celiac ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.737
BRD-K29338816	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.86262
GSE187006_3_v_1_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
named	GeneRIF Biological Term Annotations	1.0	null
SW1116	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Distal dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.768
Bladder wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.198
AKIRIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.46594
Congestive heart failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
hsa-miR-1271	TargetScan Predicted Conserved microRNA Targets	1.0	0.997906
marker	GeneRIF Biological Term Annotations	1.0	null
Excretory canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.752
RAB3IL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08385
anterior digastric muscle trigeminal motor cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08284
NCIH1915	DepMap CRISPR Gene Dependency	1.0	2.29867
Perturb_1310_KO_Cntnap4_SRP387040	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.33125
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043703
GSE261563_5_v_1_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.417
HCT15	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.06434
myometrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.469599
lambdoid septal zone	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12451
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.18539
Adrenocortical carcinoma_ACC_TCGA-OR-A5JT-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
substantia nigra	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293866
RERFLCSQ1	DepMap CRISPR Gene Dependency	1.0	2.25037
SUDHL10	DepMap CRISPR Gene Dependency	1.0	2.18526
ultrastructure	Phosphosite Textmining Biological Term Annotations	1.0	null
BRD-K47283018	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.35078
Lung adenocarcinoma_LUAD_TCGA-MN-A4N5-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neurofilament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.253
GSE174701_1_v_0_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRCGN016_MCF10A.TP53.M_24H:O10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15016
cholinergic neuron	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.62547
BRD-K27638063	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52027
JARID2-20064375-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
periventricular stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.35498
BRD-K10404799	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29921
cardiovascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.838672
regulation of neuromuscular junction development	GO Biological Process Annotations 2023	1.0	null
BRD-K44779670	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.14407
clathrin-sculpted acetylcholine transport vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Neurosecretory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.385
Salivary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.633
BRD-K39498165	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.65264
Pancreas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
MYC	ChEA Transcription Factor Targets	1.0	null
Ureter	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.9
N18TG2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.104
SUZ12-20075857-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1494
HN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23967
Colon descendens	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.591
Autoimmune disease of musculoskeletal system	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
biological_process	GO Biological Process Annotations 2015	1.0	null
Brain capillary endothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.348
Glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.163
Dentate granule cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.676
mRNA_DNMT3B_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
partially	GeneRIF Biological Term Annotations	1.0	null
BRD-K78596805	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03294
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.253
glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.24996
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.587
iris smooth muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235748
hsa-miR-4505	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
GSE242290_1_v_8_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
Poor Head Control	DisGeNET Gene-Phenotype Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-CH-5754-01A-11R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CORL311	CCLE Cell Line Gene Expression Profiles	1.0	1.9364
Blepharospasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
EP300	ENCODE Transcription Factor Targets	1.0	null
CRCGN015_HEPG2_48H:G02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00735
GSE109140_2_v_3_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
BRD-K04544693	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.26747
BRD-K85110576	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.32107
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.174
Enteric muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.772
right atrium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.265725
HCC2998	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.6157
Intestinal juice	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.514
GSE218580_1_v_5_fentanyl_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
detrusor	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.23985
electric organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.684735
Endocrine organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.218
abnormal somatic motor system morphology	MPO Gene-Phenotype Associations	1.0	null
positive regulation of neurotransmitter secretion	GO Biological Process Annotations 2025	1.0	null
HS695T	CCLE Cell Line Gene CNV Profiles	-1.0	-2.25884
Diagonal band nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00911
Invertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.71
ileocecum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.388912
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.65157
Nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.121
Hyperplasia	CTD Gene-Disease Associations	1.0	1.08549
Acute endometritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
Neural crest	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.526
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.25714
BRD-K17060750	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.22455
Down syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
abnormal social/conspecific interaction	MPO Gene-Phenotype Associations	1.0	null
NUGC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
upregulation	GeneRIF Biological Term Annotations	1.0	null
PLAG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	127.167
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.882611
intermediate stratum of AOB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21288
Dense core granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.236
RRM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13684
NCI-H1703	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00074
Anterior adductor muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.213
decreased skeletal muscle size	MPO Gene-Phenotype Associations	1.0	null
EZH2-23942234-MYOBLASTS AND MYOTUBES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053128
Edema	CTD Gene-Disease Associations	1.0	1.18587
BRD-K81884775	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.19824
H3K4me3_fibroblast of pedal digit skin_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.1729
epidermis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.856473
SF539	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.22207
neuroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4576
Cholera	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
Spinal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.281
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.751
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.950743
ES-WA7 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.05271
SNU738	CCLE Cell Line Gene Expression Profiles	1.0	1.82482
GSE109140_0_v_3_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
Agnosia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
Superior temporal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.234
CTBP2_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Corpus albicans	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.042
Colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.159
Prelimbic cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
well	GeneRIF Biological Term Annotations	1.0	null
P-19 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.657
Neuroactive ligand signaling	KEGG Pathways 2026	1.0	null
BRD-K50677542	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.03672
Skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.078
transgene	GeneRIF Biological Term Annotations	1.0	null
BRD-K22137463	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28625
CRCGN015_HEPG2_48H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.45295
Amyloidosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.386
AB-82-EP26_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.630867
H3K4me1_Brain Cingulate Gyrus	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.327164
membrane	Phosphosite Textmining Biological Term Annotations	1.0	null
Cerebral subcortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.934
antiporter activity	GO Molecular Function Annotations 2025	1.0	null
BRD-K68594161	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4841
neurotransmitter transporter activity	GO Molecular Function Annotations 2015	1.0	null
H4K20me1_H1-hESC_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Nervous system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.755
lamina propria	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.387781
Paraventricular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.249
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.318579
Superior olivary complex, periolivary region	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03741
Episodic Respiratory Distress	DisGeNET Gene-Phenotype Associations	1.0	null
G protein-coupled GABA receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.528
GSE69244_1_v_0_j147_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
dendritic spine	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.309986
PMC9396374-Table_5.XLSX-Table_S5-AR_genes_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Diencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.365
perikaryon	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.05186
BRD-K64860451	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.58689
H3K4me3_SK-N-SH_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
striatum_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.62125