association	dataset	threshold value	standardized value
Starch grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.977
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6829
3-acetylcoumarin-3044	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
NCI-H2135	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.41263
FOS	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.4408
BRD-K45394633	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04377
Gingivitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
LSR	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.0033912
JHOS4	CCLE Cell Line Gene Expression Profiles	1.0	1.57966
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K29820234	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42553
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC9724253-12920_2022_1407_MOESM1_ESM.pdf-55-ZNF776_ZNF776	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K17574409	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36648
SDHD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.17371
EL-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
STAT1_KD_GDS4754_159_human_JURKAT	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CRCGN016_MCF10A.TP53.M_24H:D18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.64948
496100509_HIP_dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.9874
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6178
plant-type vacuole membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.948
FNTA	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.004891
Thyroid gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.491
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932401
BRD-K63984483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12864
Submandibular gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.958
EOL1	CCLE Cell Line Gene CNV Profiles	1.0	1.41526
PMC12616242-can-24-3452_supplementary_table_s6_suppst6.xlsx-EWSR1FLI1-KDM6A-targets_down-EWSR1_FLI1-KDM6A_downregulated_targets_upon_KDM6A_knockout_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K99660943	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37885
TFR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.64463
interpeduncular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.51083
RERFLCAI	CCLE Cell Line Gene Expression Profiles	-1.0	-1.7955
BRD-K70945620	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52706
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1463
BRMS1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.71298
Agnosia	DisGeNET Gene-Disease Associations	1.0	null
Aleurone grain membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.669
KLE	CCLE Cell Line Gene Expression Profiles	1.0	1.41425
immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.420266
extracellular vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.057922
primary auditory cortex (core)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.999388
BRD-K30217326	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01541
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6774
BACH1	ChEA Transcription Factor Targets	1.0	null
CRCGN017_MCF10A.WT.HP_24H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.65695
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.19919
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.060976
Chordoma	DisGeNET Gene-Disease Associations	1.0	null
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6048
BRD-K50240676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05361
Peritoneal Dissemination	DisGeNET Gene-Disease Associations	1.0	null
Daudi	GDSC Cell Line Gene Expression Profiles	1.0	1.6073
TRIM62	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36938
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.5839
BL901 (IFFO1)	NURSA Protein Complexes	1.0	null
ovum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03302
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1071
HLA-A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.22705
FOXP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.79554
GSE80098,GSE80366_0_v_5_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.419
WWC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67985
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.994327
CRCGN017_MCF10A.WT.HP_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.05942
NCIH2141	CCLE Cell Line Gene Expression Profiles	-1.0	-1.68858
SPATS2L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47929
PMC10248509-Data_Sheet_6.CSV--GSE66724_DE-Genes_AND_GSE22255_DE-Genes_NOT_Autophagy_NOT_GSE58294_DE-genes_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
T24	CCLE Cell Line Gene Expression Profiles	1.0	1.63841
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1973
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
ERCC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.96601
outer portion of medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.832143
FOXA1_01_233	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.84475
BRD-K63375777	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05542
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.02096
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2347
CRCGN010_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07492
BRD-K01762107	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07456
posterior (caudal) superior temporal cortex (area 22c)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.46942
CEP104	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13199
inferolateral temporal cortex (area TEv, area 20)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.932407
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.877394
GSE210101,GSE210114_7_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Isoamylase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.838
CRCGN015_MCF10A.WT.HP_24H:M19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01137
BRD-K90644597	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.09782
BRD-K40813780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23019
Gingival fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.468
cSARS Bat SRBD_12Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.6251
Kidney renal clear cell carcinoma_KIRC_TCGA-G6-A5PC-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC6766969-PATH-249-90-s006.xlsx-TAB_S2_b-Supplementary_Table_S2_b_Top_100_upregulated_and_downregulated_genes_in_TAF15-NR4A3_vs_EWSR1-NR4A3_engineered_cell_models_NR4A3	Rummagene Transcription Factor Associations 2026	1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942422
CRCGN012_HEPG2_24H:N19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13792
BRD-K77221985	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16062
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.4608
spermatozoon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.411631
H3K27ac_GM12878_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
BRD-K43496057	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14355
Pancreatic adenocarcinoma_PAAD_TCGA-YB-A89D-01A-12R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040399
Brain Lower Grade Glioma_LGG_TCGA-RY-A847-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:C18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.21821
Mesothelioma_MESO_TCGA-SC-A6LN-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8755
lateral subdivision of BNST	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.36347
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1506
cation-transporting ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.853
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0537
BRD-K71141540	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00166
primary somatosensory cortex (area S1, areas 3,1,2)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.848864
BRD-K96377358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.71357
AZ521	CCLE Cell Line Gene Expression Profiles	1.0	1.76497
BRD-K36027285	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.80432
vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.634586
Oropharynx cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
BRD-K90594901	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00743
Hatching gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0436
BACH1-22875853-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27161
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053748
Central nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
PAQR4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31784
plant-type vacuole membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.264581
ARMC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98147
interpositus (intermediate) nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01656
BRD-K59856141	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01673
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.138
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.369
blastocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.442962
BL2212 (LATS1)	NURSA Protein Complexes	1.0	null
hsa-miR-4774-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Myeloid Leukemia	DisGeNET Gene-Disease Associations	1.0	null
primary auditory cortex (core)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35332
posteroventral (inferior) parietal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.11183
Cardiac muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-0.892019
BRD-K81782447	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.66365
CRCGN014_HEPG2_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2749
dorsolateral prefrontal cortex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05569
cerebellum_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.18356
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2312
SPATA24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52464
BRD-K39222068	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00899
parabigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.54356
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.08997
BL2600 (BRIP1)	NURSA Protein Complexes	1.0	null
BRD-K18558473	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2363
SLC25A52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.9781
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051662
BRD-K74873856	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15682
anterior hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.897544
Endoplasmic reticulum lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.847
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7046
ZNF875	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08366
JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.5019
caffeic acid-3053	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.65379
BRD-K97368902	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.4805
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04116
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
BRD-K02987495	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.28668
BRD-K18438502	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.12699
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6346
ZC3H3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31037
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CTCF	ENCODE Transcription Factor Targets	1.0	null
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3988
layer II of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.53284
apoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.722134
Exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.952
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8925
Prostate adenocarcinoma_PRAD_TCGA-H9-A6BX-01A-31R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K97692908	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10312
Salivarygland	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
Pheochromocytoma and Paraganglioma_PCPG_TCGA-TT-A6YO-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.82513
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5117-01A-01R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0745
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.71503
PMC11609822-cd-24-0018_supplementary_table_s8_suppst8.xlsx-Visium_Clusters_DEGs_LR_test_LF-gene_LTF	Rummagene Transcription Factor Associations 2026	1.0	null
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6229
cytoplasmic vesicle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.069564
KLF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.02344
FLI1_01_14	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.91844
SLC16A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04865
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.088803
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4555
KCMF1	Pathway Commons Protein-Protein Interactions	1.0	null
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1
KMS-12-BM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04116
SP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.28528
inner SZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.41835
MDA MB435	BioGPS Cell Line Gene Expression Profiles	1.0	0.895039
microsporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236627
CRCGN017_MCF10A.WT.HP_24H:P15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.57375
SHSYSY+RA	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.6191
ZNF724	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88536
Embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.246
CRCGN017_MCF10A.TP53.M_24H:H09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.12635
hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
Cyclin B1-CDK1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.046
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.01855
Ovum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.168
BRD-A71666580	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41465
Exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.747
Leaf sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.769
gastrointestinal tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4414
UBXN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17196
DMRTA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8591
BRD-K77483143	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23759
membrane-enclosed lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.077226
BRD-K86584551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17904
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1121
Skin Cutaneous Melanoma_SKCM_TCGA-GF-A6C9-06A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney Chromophobe_KICH_TCGA-KL-8345-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5959
BRD-K87261428	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00654
CAL27	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47662
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
U138MG	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52839
BRD-K38710631	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63174
PPP1CA	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K97339945	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13029
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
Intestine	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC2998	BioGPS Cell Line Gene Expression Profiles	-1.0	-2.46089
BRD-A09975616	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.65122
RASSF7	Pathway Commons Protein-Protein Interactions	1.0	null
ES6	GDSC Cell Line Gene Expression Profiles	1.0	2.6177
Kidney Chromophobe_KICH_TCGA-KL-8332-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K67142640	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.53721
BRD-K81465091	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.00558
CRCGN014_HEPG2_24H:I02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.01913
endoplasmic reticulum part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.319328
KP-N-YN	GDSC Cell Line Gene Expression Profiles	-1.0	-1.51085
hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.277584
t70-white-adipose_consensus	MoTrPAC Rat Endurance Exercise Training	1.0	3.10795
TP53BP2	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K30655307	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.45093
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7105
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.15555
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.3214
hsa-miR-1182	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
extracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
mediodorsal nucleus of thalamus_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16155
ERBB3	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.003843
Lung squamous cell carcinoma_LUSC_TCGA-85-8664-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Wholebrain	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.0806
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.8708
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986828
BRD-K82827604	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83188
VZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.29194
BRD-K77316284	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22368
cefoxitin-2735	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K12683022	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.3042
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	1.92742
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.3622
inner CP in posterosuperior (dorsal) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.840628
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4286
MDAMB436	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.596107
Childhood Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
SSTR5	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00462134
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.847268
solitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.27277
CAL33	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64037
hsa-miR-4664-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
BFTC-905	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.86291
DDB1	Pathway Commons Protein-Protein Interactions	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7919
BRD-K24598235	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01579
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3856
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0669
BRD-K88679751	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10289
HCC2885	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
benzthiazide-2989	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
hsa-miR-4722-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9169
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.354
COV318	CCLE Cell Line Gene Expression Profiles	1.0	1.47585
Hematopoietic system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
FOSB::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6437
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1476
BRD-K28258038	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.63866
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2957
Prostate adenocarcinoma_PRAD_TCGA-EJ-7331-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U-698-M	GDSC Cell Line Gene Expression Profiles	1.0	1.72967
BRD-K79438478	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24187
molecular_function	GO Molecular Function Annotations 2015	1.0	null
CRCGN017_MCF10A.TP53.M_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.37575
SNU-601	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.63438
BRD-K03476091	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00155
GSE258991_1_v_2_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Crystalloid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.533
MCC26	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K79523827	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.39486
THBD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50735
AZGP1	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN016_MCF10A.WT.HP_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.17048
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8047-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170576
Adrenocortical carcinoma_ACC_TCGA-OR-A5J2-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K89175823	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44569
Pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.394
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5187-01A-01R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAOV3	CCLE Cell Line Gene CNV Profiles	1.0	1.40629
Secondary Malignant Neoplasm Of Peritoneum	DisGeNET Gene-Disease Associations	1.0	null
exocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
napelline-2522	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.2119
Muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
Sickle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.662
BRD-K55780532	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.48646
PMC10039511-12864_2023_9238_MOESM1_ESM.xlsx-FOXO1_group-Unnamed_1_FOXO1	Rummagene Transcription Factor Associations 2026	1.0	null
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051842
dorsolateral prefrontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.48276
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877029
NCI-H1299	GDSC Cell Line Gene Expression Profiles	-1.0	-1.75086
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064255
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071124
BRD-K58168959	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37683
BRD-K43261169	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16277
LIMA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24428
intestine	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.46746
PPARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8767
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177408
BRD-K57138551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40841
SG in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.57193
Plastid	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.494
CCDC85C	Pathway Commons Protein-Protein Interactions	1.0	null
anther	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191705
Acute Lymphocytic Leukemia	DisGeNET Gene-Disease Associations	1.0	null
BRD-K57357304	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06753
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986828
METTL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.23139
HSC-3	COSMIC Cell Line Gene CNV Profiles	1.0	2.15316
hsa-miR-4802-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Adenoid Cystic Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
LRCH2	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH28	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36406
TXK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.41458
Superior temporal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.687
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3441
BRD-K67390084	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01727
BRD-K39561340	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33501
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3326-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ULK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.75557
BRD-K26091803	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31279
spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.162907
SNU1040	CCLE Cell Line Gene Expression Profiles	1.0	1.79856
CRCGN017_MCF10A.WT.HP_24H:N22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6855
VEZT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39474
deep layers of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05556
cSARS Bat SRBD_30Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.58096
CTCF_K562_hg19_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
xylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.460305
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0827
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4716
primary motor cortex (area M1, area 4)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02369
ventrolateral prefrontal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.6777
gigantocellular reticular nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0911
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4159-01A-02R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2905
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3249
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52497
BRD-K08715020	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40244
Brain Lower Grade Glioma_LGG_TCGA-HT-A74H-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-LB-A7SX-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NDUFA2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00526293
anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.4231
salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
tetroquinone-2999	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.306805
184A1N4	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.734692
BRD-K85716998	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.29643
duodenum	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23961
hypersensitivity reaction disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.312102
BACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.79532
raloxifene-2738	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K71622214	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23347
BRD-K56272400	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70562
BRD-K39476596	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.82913
SU8686	CCLE Cell Line Gene Expression Profiles	-1.0	-2.3688
BRD-K15769121	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49302
GUCA1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.81151
Fetallung	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.07531
Pollen allergy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.661
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.094
MZ in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.853119
Solid Neoplasm	DisGeNET Gene-Phenotype Associations	1.0	null
CRCGN009_HEPG2_24H:C16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42711
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
cerebellar cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.949269
HUTU80	CCLE Cell Line Gene Expression Profiles	1.0	2.65492
BRD-K97688756	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11343
DOCK7	Pathway Commons Protein-Protein Interactions	1.0	null
OTX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9653
HSC3	CCLE Cell Line Gene CNV Profiles	1.0	2.05856
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4795-01A-02R-1420-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Noninfiltrating Intraductal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
inferior olive, dorsal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00672
equilin-3039	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Multiple Myeloma	DisGeNET Gene-Disease Associations	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040579
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.083515
H2AC13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18213
Aleurone grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.435
Hepatitis B	DisGeNET Gene-Disease Associations	1.0	null
RT11284	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34571
Invasive Carcinoma Of Breast	DisGeNET Gene-Disease Associations	1.0	null
BRD-K28565184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.52178
BRD-K90527476	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47559
CRCGN015_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.41469
BRD-K00046588	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21679
BRD-A15454510	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21113
salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.134454
NCI-H2373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30374
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6141
Callus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.204
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1476
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.9976
NCIH82	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85033
BRD-K85722065	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20709
LIVF001-018	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38409
NCI-N87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884753
Spikelet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.975
BRD-K76609014	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32786
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0091
WSU-NHL	GDSC Cell Line Gene Expression Profiles	1.0	1.61166
Leukemogenesis	DisGeNET Gene-Disease Associations	1.0	null
UPF1_Deficiency_GDS2781_188_human_HeLa cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BRD-K16364953	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22836
Periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.702
BRD-K44994529	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21639
extracellular organelle	GO Cellular Component Annotations 2015	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
inner CP in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.33701
Leukemialymphoblastic(MOLT-4)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.04213
MOLT4	BioGPS Cell Line Gene Expression Profiles	1.0	1.61184
CRCGN017_MCF10A.WT.HP_24H:M21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.06805
HUG1N	CCLE Cell Line Gene CNV Profiles	-1.0	-2.37855
BRD-K89701103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.99031
Colon Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1289
BRD-K96615474	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42343
BRD-K33438042	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02742
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.679
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
TT	CCLE Cell Line Gene CNV Profiles	1.0	1.40241
BRD-K08996393	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36377
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EX-A449-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cerebellar cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.30875
SP in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.28629
VANGL1	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K90686530	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08437
496100337_HIP_possible Alzheimer's disease_no TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.72647
BRD-K86981519	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12325
Sublingual gland duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.119
meclofenoxate-2546	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.786
phenformin-3725	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
BRD-K73088636	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37964
tooth germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.316588
BRD-K07196884	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13875
CRCGN016_MCF10A.TP53.M_24H:E20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.97521
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.89066
BRD-K83775558	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06767
BRD-K00231307	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.34768
ZNF418	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9051
EFNA3	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00570702
BRD-K60751806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.82725
medioventral part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.34921
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.610943
USP9X	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K86077185	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2394
BRD-K56870337	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27473
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32616
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53324
BRD-K62248885	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10344
BRD-K47410882	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46711
BRD-K75746738	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08759
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1476
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096759
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1353
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
PARD3	Pathway Commons Protein-Protein Interactions	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ZS-A9CG-01A-11R-A37K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.34607
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52497
BRD-K13301506	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04231
RASSF10	Pathway Commons Protein-Protein Interactions	1.0	null
Enterovirus 71_8Hour_None_GSE15323	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.14953
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4725
CRCGN008_HEPG2_24H:D09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1525
esculin-3390	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN012_HEPG2_24H:I13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.13503
BRD-K76620631	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21974
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
endopeptidase inhibitor activity	GO Molecular Function Annotations 2023	1.0	null
Teeth hard tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
BRD-K56879482	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0103
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040053
primary auditory cortex (core)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.21419
KLF4_01_339	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.62453
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.091845
hymecromone-3045	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
corpus callosum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01991
organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.067379
C1orf35	Pathway Commons Protein-Protein Interactions	1.0	null
Periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.697
Parotid gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.679
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.555559
BRD-K69678391	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54342
BRD-K20110031	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.49506
hsa-miR-4728-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
SNU-C1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.905831
CUX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3824
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R2-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SPRR2E	Pathway Commons Protein-Protein Interactions	1.0	null
EBC1	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8317-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN015_MCF10A.WT.HP_24H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.03632
regulation of sensory perception	GO Biological Process Annotations 2023	1.0	null
BRD-K51779559	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.83
BRD-K16605233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.59412
ZNF484	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.49019
BRD-K24669989	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.3
Incisor	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.997
BRD-K92806245	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.07275
BRD-K74311661	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57359
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4042
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.007
cholera	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.242595
submandibular gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.326067
biological_process	GO Biological Process Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RP-01A-21R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
LY-294002-2699	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
hippocampus (hippocampal formation)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.972431
BRD-K04969760	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04316
BRD-K77046858	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.04317
BRD-K17152303	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36544
CRCGN008_HEPG2_24H:I10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.31267
CRCGN015_MCF10A_48H:H22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.11954
BRD-K94401439	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.64044
Storage vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.179
RAF1_activemutant_219_GSE42964	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.50343
Parotitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04938
posterior (caudal) superior temporal cortex (area 22c)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01156
Aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.221
Prostate adenocarcinoma_PRAD_TCGA-EJ-7125-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Amyloplast envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.284
NR2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K76588081	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20152
MEL18_DN.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	-1.0	null
COLO320	CCLE Cell Line Gene CNV Profiles	1.0	1.342
vacuolar part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.06825
CUX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5756
inferior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.21682
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.074623
protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	2.69657
Enamel caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
BRD-K02065805	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16471
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.555559
CRCGN015_MCF10A.WT.HP_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.57854
BRD-K11667893	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22099
SRRM2	Pathway Commons Protein-Protein Interactions	1.0	null
Aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.38
Smoldering Myeloma	DisGeNET Gene-Disease Associations	1.0	null
amygdaloid complex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59514
free-living state	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.902
BRD-K93698227	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06354
BRD-K35442564	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22771
NFYA_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC11609822-cd-24-0018_supplementary_table_s8_suppst8.xlsx-Visium_Clusters_DEGs_LR_test_LF-Unnamed_0_LTF	Rummagene Transcription Factor Associations 2026	1.0	null
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.75284
16715129-SuppTable5	GeneSigDB Published Gene Signatures	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
Tear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.351
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.803
hsa-miR-485-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
BRD-K87722624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15281
vorinostat_homo sapiens_gpl6947_gse41504	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
BRD-K84052780	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48085
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-0.892019
Stomach Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
COV504	CCLE Cell Line Gene Expression Profiles	1.0	3.40782
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04204
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.275445
BRD-K22475995	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14255
Non-Small Cell Lung Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
dorsolateral prefrontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.853743
Hepatic Cirrhosis_Liver_GSE6764	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.92123
NCI-H522	GDSC Cell Line Gene Expression Profiles	-1.0	-1.63784
LNCaP clone FGC	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
cytoplasmic vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.098422
RPMI8402	CCLE Cell Line Gene CNV Profiles	1.0	1.88494
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A73E-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
temporal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.2439
midbrain reticular formation	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49209
BEN	CCLE Cell Line Gene CNV Profiles	1.0	1.4668
Bunina body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.568
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	97.5176
amygdaloid complex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.871056
Gingival disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
CRCGN014_HEPG2_24H:A20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.60584
CDK4_knockdown_85_GSE27869	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.70492
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CF-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TMED8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.09729
Uveal Melanoma	DisGeNET Gene-Disease Associations	1.0	null
outer CP in subgenual (subcallosal) cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05312
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9678
b12	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.524
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932401
A172	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.31339
CD1E	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00628911
NCIH1048	CCLE Cell Line Gene Expression Profiles	1.0	1.97139
Prostate adenocarcinoma_PRAD_TCGA-HC-7737-11A-02R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.5891
KPNSI9S	CCLE Cell Line Gene CNV Profiles	-1.0	-2.40279
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1788
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3779
Hrd1p ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.409
ERCC6L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24832
bucladesine-2741	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.025
B4GALT3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8542
TBX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.94722
semen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.1405
Amylin receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.801
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75799
pollen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.653807
CMK115	CCLE Cell Line Gene Expression Profiles	-1.0	-1.57455
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6307
MOTN1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49382
LN319	CCLE Cell Line Gene Expression Profiles	-1.0	-1.7104
BRD-K05479183	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07596
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52349
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00699
Condensin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.845
BRD-K21660570	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25028
bounding membrane of organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.074643
SKMEL5	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.14406
caudal ganglionic eminence_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24155
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.1628
Abetalipoproteinemia	DisGeNET Gene-Disease Associations	1.0	null
PANC 04.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9285
MDP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76759
BRD-K44193634	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34952
Muscle	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
saliva	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
aleurone grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.18697
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.079887
aggressive periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.734217
NR6A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.8043
primary auditory cortex (core)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.03698
BRD-K67950754	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95606
BRD-K82292504	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.18186
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11781
BRD-K34363290	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20385
BRD-K03344897	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41485
Mesocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.089
Rectum adenocarcinoma_READ_TCGA-AF-6672-01A-11R-1830-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A21584932	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.16611
primary visual cortex (striate cortex, area V1/17)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.09371
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HO-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN014_HEPG2_24H:A03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.36753
inner SZ in ventrolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.946711
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.19
primary auditory cortex (core)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.945292
BRD-K47618355	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08087
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27505
Caryopsis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.28
Pancreatic adenocarcinoma_PAAD_TCGA-IB-AAUO-01A-12R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.081997
MS4A6A	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00449161
LY-294002-2687	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
NFYB	ENCODE Transcription Factor Targets	1.0	null
18855877-TableS2	GeneSigDB Published Gene Signatures	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.5512
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.30411
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4955
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A3A8-01A-11R-A22L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6877
saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.683511
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1895
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878229
HT1080	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55835
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39265
sirolimus_homo sapiens_gpl2895_gse16944	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
UBR7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.78125
Trachea	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.16315
BRD-K37387086	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14729
Head	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.952
MAFK	ENCODE Transcription Factor Targets	1.0	null
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4207
Dental plaque	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.98
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5901
estradiol-2701	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K15098674	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.51767
oculomotor nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.858656
Prostate adenocarcinoma_PRAD_TCGA-EJ-7785-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.559
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4620-11A-01R-1758-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Central Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
BRD-K04559718	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10201
BRD-K41939184	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.44613
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.895005
BRD-K79735667	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.05293
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1064
Tumor Angiogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
Penile disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.146
RLF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74771
Female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
Brain Lower Grade Glioma_LGG_TCGA-TM-A7CF-02A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K85802892	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.65187
496100604_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.07149
BRD-K27671601	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3311
BRD-A80057650	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0229
BRD-K18527484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1365
CHL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
A673	GDSC Cell Line Gene Expression Profiles	1.0	1.55721
organelle	GO Cellular Component Annotations 2015	1.0	null
PTPN13	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K84118789	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.93932
BRD-K08311368	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.24707
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9573
OVKATE	CCLE Cell Line Gene Expression Profiles	1.0	1.49891
CRCGN016_MCF10A.TP53.M_24H:J11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1191
aleurone layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.25771
BRD-K86111620	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.72326
Plant ovule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.117
YWHAE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.79824
Amylin receptor complex 1	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.889
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6933-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3375
BRD-A09988375	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25305
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
regulation of sensory perception	GO Biological Process Annotations 2025	1.0	null
HUTU-80	GDSC Cell Line Gene Expression Profiles	1.0	3.03714
HCC1500	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.32614
BRD-K60507129	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.24006
plant-type vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.774
BRD-K68540120	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.30947
BRD-A45014336	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.09231
FOXP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4712
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0297
SIRT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1998
CRCGN013_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.30805
BRD-K32235162	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33535
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35811
BRD-K10540354	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02685
Prostate	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.0516
hsa-miR-129-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
BRD-K56881825	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.21527
BRD-K37696710	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17823
Parotid disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.01
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7368
COV362	CCLE Cell Line Gene Expression Profiles	1.0	2.13764
LIVF001-019	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.11814
BRD-K42713448	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06504
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3054
KYSE450	CCLE Cell Line Gene CNV Profiles	1.0	1.50115
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.692379
ASMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52011
BRD-K43287163	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47852
cerebellar cortex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.932407
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.13418
Acute Monocytic Leukemia	DisGeNET Gene-Disease Associations	1.0	null
BRD-K76921877	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02355
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30374
BRD-K62536891	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.38336
BRD-K75649446	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31295
Female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
HS766T	CCLE Cell Line Gene Expression Profiles	1.0	1.61003
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040405
OVCAR-8	GDSC Cell Line Gene Expression Profiles	-1.0	-2.07498
Panicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
MDA-MB-330	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75799
BRD-K34595206	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.91719
BRD-K59544784	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.07803
DETROIT562	CCLE Cell Line Gene CNV Profiles	1.0	1.91209
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.14
Submaxillary gland androgen-regulated protein like	InterPro Predicted Protein Domain Annotations	1.0	null
CAKI1	BioGPS Cell Line Gene Expression Profiles	1.0	1.05016
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8049
inferolateral temporal cortex (area TEv, area 20)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.83083
striatum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.834067
CRCGN011_HEPG2_24H:G18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0731
ZNF75D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74617
primary motor cortex (area M1, area 4)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.93242
BRD-K97666659	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.90462
dentate (lateral) nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.2985
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
PMC8500868-401_2021_2354_MOESM5_ESM.xlsx-GEP_PATZ1-Gene_Symbol_PATZ1	Rummagene Transcription Factor Associations 2026	1.0	null
ovary	HPA Tissue Gene Expression Profiles	1.0	0.837702
ETV5::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3052
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.95225
Lung adenocarcinoma_LUAD_TCGA-44-6148-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K54862370	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37461
RPS6KB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62361
progesterone_homo sapiens_gpl570_gse29437	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LA-01A-11R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CSNK2B	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K48756106	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17026
VZ in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.03704
BRD-K32176914	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69908
BRD-K27011412	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70643
CRCGN015_MCF10A.WT.HP_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.9116
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.617
CRCGN017_MCF10A.WT.HP_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.722
MCM7	Pathway Commons Protein-Protein Interactions	1.0	null
Sensory dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
H2BC7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.61778
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052333
BRD-K27137352	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76159
ventrolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.833428
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.475
Appendix	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.931014
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.07755
SAOS2	CCLE Cell Line Gene Expression Profiles	-1.0	-2.61772
CRCGN014_HEPG2_24H:D01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.42683
MMD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96343
BRD-K98510376	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88741
hypersensitivity reaction type i disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.56722
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.377996
BRD-K62982188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23887
pancreas	HPA Tissue Gene Expression Profiles	1.0	1.21141
T24	BioGPS Cell Line Gene Expression Profiles	1.0	2.41625
IZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.216
cleavage furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.616709
letrozole-7336	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Dental caries	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.601
NR2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.4563
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.408699
CRCGN014_HEPG2_24H:F01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04056
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.075213
BACH1-22875853-CHIP-PCR-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Squamous Cell Carcinoma Of Esophagus	DisGeNET Gene-Disease Associations	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.914879
MIR222_KD_GDS4054_456_human_MCF7 breast cancer cells (fulvestrant-resistant)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
CRCGN015_MCF10A.WT.HP_24H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6715
PRICKLE3	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K99736408	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04059
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7929
MZ in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.47455
BRD-K85059356	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0181
BRD-K76544773	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.2497
stratum pyramidale of rostral CA2	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.15549
protoxylem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.199389
BRD-K84710243	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83011
BRD-K53748177	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.26663
Thyroid	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.55362
DDX31	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36069
BRD-K26161397	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12668
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3491
GDI2	Pathway Commons Protein-Protein Interactions	1.0	null
ACC3	BioGPS Cell Line Gene Expression Profiles	1.0	1.14225
BRD-K94790210	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54327
BRD-K99469929	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13433
LIVF001-005	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.68043
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.7014
GSE210101,GSE210114_0_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE210101,GSE210114_8_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Childhood Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Scutellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.871
RI1	CCLE Cell Line Gene Expression Profiles	1.0	1.35342
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05699
BRD-K29760532	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08624
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
BCPAP	CCLE Cell Line Gene Expression Profiles	1.0	2.4087
NCIH889	CCLE Cell Line Gene Expression Profiles	-1.0	-1.79302
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.492561
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.42987
Thylakoid lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.517
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935318
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SQ-A6I4-11A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Periderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.778
BRD-K48922193	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79762
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5736
TUG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89323
PMC10039511-12864_2023_9238_MOESM1_ESM.xlsx-LPS_group-Unnamed_1_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4095
Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
CRCGN015_MCF10A.WT.HP_24H:P17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.33898
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K61494613	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5899
BRD-K45677957	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1158
alimentary canal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CPVL	Pathway Commons Protein-Protein Interactions	1.0	null
membrane-bounded vesicle	GO Cellular Component Annotations 2015	1.0	null
BRD-K28733696	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.23866
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.51048
hippocampus (hippocampal formation)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.02968
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.6226
JHUEM3	CCLE Cell Line Gene Expression Profiles	1.0	1.90628
BRD-K45289917	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.32145
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8878
SG in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.997189
CRCGN011_HEPG2_24H:L12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.08127
23132/87	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68752
BRD-K35209334	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.37388
Phellem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.835
BRD-K60828476	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.86815
VZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.29496
Gametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.078
VAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7462
Uterus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.924239
muscle	GTEx Tissue Gene Expression Profiles	-1.0	-0.892019
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8001
KS1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50903
NFYB_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
BRD-K41958183	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16813
Serous acinar cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.599
stele	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379123
GSE210101,GSE210114_11_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
posteroventral (inferior) parietal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.62761
pancytopenia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.947019
NFYA	ENCODE Transcription Factor Targets	1.0	null
BRD-K57472585	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19634
NCI-H2172	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Duodenum	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Trunk	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.491
BRD-K93677460	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.23054
BRD-K06332513	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.0764
Adenoid cystic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.323
primary auditory cortex (core)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1003
METTL17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3989
Alimentary canal	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Rectum adenocarcinoma_READ_TCGA-AG-3742-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7651-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Secondary Malignant Neoplasm Of Liver	DisGeNET Gene-Disease Associations	1.0	null
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K47271260	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00683
Tonsil cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.311
inner CP in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13397
progesterone_homo sapiens_gpl570_gse29435	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-0.892019
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9152
S100A7	Pathway Commons Protein-Protein Interactions	1.0	null
PPP1R13L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.44994
Meibomian gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.005
GGCT	Pathway Commons Protein-Protein Interactions	1.0	null
RBBP4	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K94771818	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.20787
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.75799
raphe obscurus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.35397
Rough endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.255
Kidney Chromophobe_KICH_TCGA-KN-8424-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.884753
BRD-K29469525	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.79226
dorsal motor nucleus of the vagus (vagal nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.979209
hsa-miR-1298	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
hsa-miR-4739	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HOXC13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4968
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7695
Kidney renal papillary cell carcinoma_KIRP_TCGA-P4-A5EA-01A-11R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
canthaxanthin	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06259
primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177795
SLC2A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47509
MOLT4	CCLE Cell Line Gene Expression Profiles	-1.0	-2.22288
BRD-K82130737	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.20049
BRD-A87494167	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22194
Sporangiophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.072
Nervous system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
hsa-miR-4694-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
submandibular gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.782725
BRD-K13968264	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37485
BRD-K16670438	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40837
Axillary bud meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.244
RERFLCSQ1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.22059
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3238
BRD-K01152687	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.70438
BRD-K66453893	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15993
BRD-K76431854	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19057
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.24684
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8432
BRD-K46715415	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.13015
BRD-K69175109	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06034
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8081
BRD-K20501114	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04723
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044908
BRD-K60834597	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55152
HOXA5	JASPAR Predicted Transcription Factor Targets	1.0	null
ER body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.823
Mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.597
CRCGN017_MCF10A.WT.HP_24H:N03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.00055
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7838
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051392
MZ in posteror frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.17641
BL1031 (ZMYM3)	NURSA Protein Complexes	1.0	null
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
Pancreas	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.625
TCF7L2	ENCODE Transcription Factor Targets	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81H-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
lorglumide-4658	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
cell division site part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.393162
Mitotic spindle assembly checkpoint MAD1-MAD2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.518
COLO-829	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CRCGN015_MCF10A.WT.HP_24H:I19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.06503
amiodarone-4657	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
GSE226439,GSE226441_6_v_2_hnf4g_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RXRA::VDR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Salivary gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.952
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68301
BRD-K69241192	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.3401
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.98918
Acinar cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.456
amiprilose-3000	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Throat	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.491
496100534_FWM_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.90757
inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.966019
BRD-K52245873	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1335
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36655
parasolitary nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.01012
intracellular organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.098213
anterior (rostral) cingulate (medial prefrontal) cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.14344
BRD-K05970499	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.52411
extracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35811
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05161
BRD-K09655230	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.31272
Protein storage vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.317
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
propranolol-3059	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Priapism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27161
Forebrain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
SG in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.92303
NKRF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93395
ANXA1	Pathway Commons Protein-Protein Interactions	1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05047
MZ in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01294
Sarcoma_SARC_TCGA-HS-A5N8-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-A73618687	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.31734
late endosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.17687
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051741
BRD-K64728664	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.22395
TMEM259	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.49761
CRCGN015_MCF10A_48H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05181
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.41914
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09075
18801183-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
orbital frontal cortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.848864
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04867
stratum lacunosum-moleculare of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15217
Pulp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
FOXL2NB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.52779
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
T-24	GDSC Cell Line Gene Expression Profiles	1.0	2.29579
BRD-K98418950	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25787
BRD-K56285711	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.06919
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.026
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58486
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48115
BRD-K77223020	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07191
Mouth	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K46949676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03971
BRD-K72351789	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04778
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.80605
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.3679
GPI-PLD_OE_GDS2049_176_human_Hepatoma HepG2 cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
CRCGN008_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.54865
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9969
procambium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.122961
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68747
TCF7L2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0669
GSE70935_2_v_4_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082003
BRD-K76351135	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5262
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
polysensory temporal cortex (area 22p)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.66253
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.214636
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
trichostatin A-3058	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K36563688	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.39014
Skin Cutaneous Melanoma_SKCM_TCGA-IH-A3EA-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K85649685	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.023
HSF1_01_155	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60864
BRD-K57382977	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01608
BL2547 (CTCF)	NURSA Protein Complexes	1.0	null
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8733
BRD-K81217407	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59047
Salivary duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.811
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.9715
BRD-K73573019	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08014
FOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4639
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00286
CRCGN016_MCF10A.TP53.M_24H:L10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.12387
FXR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95255
regulation of sensory perception of pain	GO Biological Process Annotations 2023	1.0	null
Salivary gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN015_MCF10A.WT.HP_24H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.21801
EMX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.12962
BL2394 (CDT1)	NURSA Protein Complexes	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-7797-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU719	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0662
BRD-A39521712	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07788
PMC12616242-can-24-3452_supplementary_table_s4_suppst4.xlsx-EWSR1FLI-KDM6A_genes-Genes_associated_to_EWSR1_FLI1-KDM6A_peaks_in_A-673_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
CRCGN014_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.51326
CRCGN016_MCF10A.WT.HP_24H:H08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.34373
CRCGN016_MCF10A.TP53.M_24H:O20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.83457
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.850875
KMH2	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03234
BRD-K72602058	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03011
B4GAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67524
BRD-K91513229	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.167
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4562
496100379_TCx_probable Alzheimer's disease_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.56033
BRD-K45172622	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.36071
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050749
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086151
BRD-K40061857	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.08557
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1847
sporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.166834
Impotence	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
CRCGN016_MCF10A.TP53.M_24H:P24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.85663
K562	BioGPS Cell Line Gene Expression Profiles	1.0	1.40326
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55464
RBPMS	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8037
BRD-K05462252	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.44311
CRCGN015_MCF10A.TP53.M_24H:M08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.73303
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.504724
CRCGN016_MCF10A.TP53.M_24H:C10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.02148
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06908
BRD-K57155690	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.89705
Ovary	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
CP in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.951567
estradiol_homo sapiens_gpl570_gds3283	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Sexual dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.102
IRF2	JASPAR Predicted Transcription Factor Targets	1.0	null
aleurone grain membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.31088
posteroventral (inferior) parietal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.42401
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8772
BL41	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59426
KNS-62	GDSC Cell Line Gene Expression Profiles	-1.0	-1.47332
Cardiovascular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
liver cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320227
OVKATE	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42537
ER ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.299
CRCGN015_MCF10A_48H:F02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.5174
BRD-K72892670	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15229
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.3888
BRD-K70158474	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03591
BRD-K72713703	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22327
CRCGN008_HEPG2_24H:I13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6193
Childhood Kidney Wilms Tumor	DisGeNET Gene-Disease Associations	1.0	null
extracellular vesicle	GO Cellular Component Annotations 2015	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06908
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6324-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8184
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058207
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043271
extracellular vesicular exosome	GO Cellular Component Annotations 2015	1.0	null
BRD-K85044233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.64449
hsa-miR-4756-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
A-Netherlands-602-2009(H1N1)_18Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.52399
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8494
HCC1500	CCLE Cell Line Gene CNV Profiles	1.0	3.22137
G361	CCLE Cell Line Gene CNV Profiles	1.0	1.34463
BRD-K00418890	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00637
BRD-K14268329	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46763
Endocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.252
CRCGN017_MCF10A.TP53.M_24H:I10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.53138
protein binding	GO Molecular Function Annotations 2015	1.0	null
184B5	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.755838
BRD-K95508535	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.75429
BRD-K03923461	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1449
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.8017
BRD-K10146653	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.43734
orbital frontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0261
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A3WU-01B-11R-A23N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH446	CCLE Cell Line Gene Expression Profiles	1.0	1.45303
PPP1R13B	Pathway Commons Protein-Protein Interactions	1.0	null
CRCGN013_HEPG2_24H:A06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.07279
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04204
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.85
Glume	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
hsa-miR-4495	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
CR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.62788
SP in dorsomedial extrastriate cortex (V2)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.56459
496100500_PCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.67641
TOV112D	CCLE Cell Line Gene Expression Profiles	1.0	1.38372
BRD-K80066561	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.61427
flunixin-2552	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN011_HEPG2_24H:L14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42858
GSE85880,GSE85881_4_v_2_tretinoin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1469
CTSD	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K68401280	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15194
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.6314
HTC-C3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.8547
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.43251
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.146
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19969
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.182
inner CP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.57832
BRD-K67734449	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.25722
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4519
hippocampus (hippocampal formation)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.005
BRD-K27945483	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5464
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
salivary gland	GTEx Tissue Gene Expression Profiles	1.0	1.75541
NUGC-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36372
Perivitelline space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.866
BL2850 (MED28)	NURSA Protein Complexes	1.0	null
BRD-A08778300	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15521
Endoplasmic reticulum chaperone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.124
CRCGN012_HEPG2_24H:J21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.30133
cellular_component	GO Cellular Component Annotations 2015	1.0	null
BRD-K48056188	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00207
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7242
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2093
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932401
BRD-K58932103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08479
extracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Sarcoma_SARC_TCGA-DX-A23R-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27043
ventrolateral prefrontal cortex_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.960555
MUC7	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K25822126	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.32884
BRD-K40432489	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46841
VSIG10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.67989
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.3067
endosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.087027
BRD-K34169251	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03698
blood	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
dorsolateral prefrontal cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.29133
BRD-K54386075	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.95361
BRD-K78195641	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55066
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
monobenzone-3054	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
hsa-miR-654-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SERPINB3	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9949
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09075
sporangiophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.161237
PMC8844187-Table_2.xlsx-prostate-DLX1_DLX1	Rummagene Transcription Factor Associations 2026	1.0	null
RBPJ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6757
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7119
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42272
TTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35869
ECC12	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61333
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9927
extracellular region part	GO Cellular Component Annotations 2015	1.0	null
mouth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.078523
secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.084693
BRD-K85294251	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.88364
BRD-K54023716	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14831
Gastrointestinal tract	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K27028848	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33332
ZR751	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.36737
Submandibular gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
p53 transcriptional gene network	WikiPathways Pathways 2024	1.0	null
VZ in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.72553
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RF-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K56161792	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.92795
LIVF001-029	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.37517
Internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
BRD-K89806367	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22936
Carcinoma Of Lung	DisGeNET Gene-Disease Associations	1.0	null
Childhood Acute Lymphoblastic Leukemia	DisGeNET Gene-Disease Associations	1.0	null
BRD-K68433511	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03321
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
inferolateral temporal cortex (area TEv, area 20)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1003
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Exocrine glandular secretion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
Lung squamous cell carcinoma_LUSC_TCGA-85-7698-01A-11R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K29383520	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02463
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.994327
Pellicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.113
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4164-01A-02R-1325-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6356-11A-01R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351856
BRD-K26051610	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.14068
MGA::EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4269
storage vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.84771
NCVADR RES	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.12337
BRD-K29338816	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.37119
arsenic trioxide_homo sapiens_gpl201_gse48441	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
NCIH1339	CCLE Cell Line Gene CNV Profiles	1.0	1.61397
Rough endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.748
CD2AP	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	-1.0	-0.00404554
BRD-K69515345	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.47476
BRD-K61505971	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.03587
spermatid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190957
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0515
Kidney Chromophobe_KICH_TCGA-KL-8324-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932401
Diencephalon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
Sarcoma_SARC_TCGA-SG-A6Z7-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN012_HEPG2_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.04679
facial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.883837
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.543176
pollen mother cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.196473
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6944
ALDH9A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.57535
BRD-K15028515	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17687
CRCGN011_HEPG2_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.26275
BRD-K17858048	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5297
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0451
Adult Acute Lymphocytic Leukemia	DisGeNET Gene-Disease Associations	1.0	null
BRD-K45367466	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12755
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4302
BRD-K56022813	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35262
BRD-K75989234	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.22409
CL11	CCLE Cell Line Gene Expression Profiles	1.0	1.83813
Saliva	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2987
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2576
639V	CCLE Cell Line Gene Expression Profiles	1.0	2.25277
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4791
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0661
MAFK_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.086151
BRD-K52300725	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.02542
PMC12616242-can-24-3452_supplementary_table_s4_suppst4.xlsx-EWSR1-FLI1-KDM6B_genes-Genes_associated_to_EWSR1_FLI1-KDM6B_peaks_in_A-673_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.537005
GSE85880,GSE85881_4_v_1_tretinoin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Malignant Tumor Of Colon	DisGeNET Gene-Disease Associations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4843-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
periodontitis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.259477
cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.616709
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A4P6-01A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SkeletalMuscle	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.903768
PK45H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54385
ISTMEL1	DepMap CRISPR Gene Dependency	1.0	2.04492
Megagametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.122
primary auditory cortex (core)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.900043
posteroventral (inferior) parietal cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.24265
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044529
SNB19	BioGPS Cell Line Gene Expression Profiles	-1.0	-0.829859
H2BC21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.77795
BRD-K86750448	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17264
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5984-11A-01R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K69330446	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.93791
CSTA	Pathway Commons Protein-Protein Interactions	1.0	null
Recurrent Tumor	DisGeNET Gene-Phenotype Associations	1.0	null
head	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
chr4_70383059_G_T_b38	GTEx eQTL 2025	1.0	2.25793
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.9356
tilorone	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73538
amygdaloid complex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.46525
BRD-K57748937	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.59586
BRD-K11596967	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.55329
primary motor cortex (area M1, area 4)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.48361
GM2493	BioGPS Cell Line Gene Expression Profiles	1.0	0.887372
CSNK2A1	Pathway Commons Protein-Protein Interactions	1.0	null
Exocarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.79
SOHLH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.77081
head and face region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.23045
GSE210101,GSE210114_1_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
pontine nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.9025
root	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.38552
mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06908
SHSYSY-RA	BioGPS Cell Line Gene Expression Profiles	-1.0	-1.17122
BRD-K73443280	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12227
endopeptidase regulator activity	GO Molecular Function Annotations 2023	1.0	null
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18217
hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.056939
levobunolol-3015	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7772
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Thalamus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.31354
extracellular space	GO Cellular Component Annotations 2015	1.0	null
PA-TU-8902	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62288
Sublingual gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.53
pyrithyldione-2740	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN016_MCF10A.TP53.M_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.74261
hsa-miR-4263	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
CRCGN015_MCF10A.TP53.M_24H:P13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.31402
BRD-K43237307	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27537
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19969
BRD-K79658624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12682
BRD-K68055156	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1735
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4804-01A-02R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH2405	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37598
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
BRD-K57271749	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26212
CWF19L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06342
outer CP in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07974
CRCGN015_HEPG2_48H:A04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.71129
BRD-K71538933	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.50389
hybridoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.487886
OVSAHO	CCLE Cell Line Gene Expression Profiles	1.0	1.524
EBC-1	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.24687
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.8807
CRCGN017_MCF10A.WT.HP_24H:I10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.1216
RH-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H2AFZ_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Primary Malignant Neoplasm Of Lung	DisGeNET Gene-Disease Associations	1.0	null
primary auditory cortex (core)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.6591
Apoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.784
MED1_OE_GDS4846_11_human_LNCaP prostate cancer cell	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
BRD-K15433418	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26978
HDMYZ	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7642
Triple Negative Breast Neoplasms	DisGeNET Gene-Disease Associations	1.0	null
liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.255594
ITK_defectivemutant_125_GSE28200	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.36832
GRHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.762
hsa-miR-342-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Seed coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.255
NCI-H2023	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.994327
BRD-K10325583	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13188
tooth disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.160387
BRD-K97486995	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.34876
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.876776
BRD-K01121723	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15175
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1034
BRD-K62979806	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.69335
CCDC66	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03966
MYOCD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3963
hsa-miR-4531	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03233
CRCGN016_MCF10A.TP53.M_24H:I11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6184
GATA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28351
BRD-A36428246	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.01366
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058729
16391795-Table3	GeneSigDB Published Gene Signatures	1.0	null
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051315
Blood	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K04488512	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.35724
BRD-K95369587	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05045
Bipolar Disorder_frontal cortex_GSE5389	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.89438
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9642
BRD-K60812542	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05952
PMC4858740-ncomms11473-s2.xls-HAdV-D9_Cr1b_Library_2-Hit_name_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K39397248	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.13504
BRD-K59701963	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67037
NTMT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.97162
Myosin XI complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.748
Submandibular ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.86
BRD-K31721388	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.63134
RAD21	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K31778201	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.79216
496100351_FWM_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	11.2217
magnocellular division of VA	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.954692
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36372
NIBAN3	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00418211
Brain	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
CRCGN015_MCF10A_48H:H23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.00196
CRCGN015_MCF10A.TP53.M_24H:E18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.67915
BRD-K40102258	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.41185
PMC7880998-41467_2021_21255_MOESM8_ESM.xlsx-Sup_Data_5_TWIST_Panel-Gene_Name_TWIST1	Rummagene Transcription Factor Associations 2026	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32616
BRD-K67104687	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12357
Salivary gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.926
LIVF001-015	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.1459
BRD-K39396484	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1236
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8608
molecular layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04851
Vertebrate muscular system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
Secondary Malignant Neoplasm Of Lymph Node	DisGeNET Gene-Disease Associations	1.0	null
Orange allergy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.635
Prestwick-857-3016	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K88645787	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.06846
BRD-K61742182	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.17933
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09906
Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Serous gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.5653
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.00996
CRCGN016_MCF10A.TP53.M_24H:H09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.57528
GSE212762_1_v_2_smarcb1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Sialolithiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.617
PRDM2	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00423945
BRD-A62995832	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-4.02087
CRCGN008_HEPG2_24H:K21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03835
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.043826
FTC238	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76396
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6381
TSPAN9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.18793
sodium:potassium-exchanging ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.875
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051488
BT483	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.19547
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2RN-01A-12R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4326-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8638-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17376
BRD-K52372795	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.75846
Pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.376
CRCGN016_MCF10A.TP53.M_24H:P10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.2793
BRD-K65602491	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.48345
SULF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89262
BRD-K48516290	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.5437
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.375179
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1097
Submandibular gland duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.127
floret	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.139828
POU4F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.1543
TCCSUP	CCLE Cell Line Gene Expression Profiles	1.0	1.38035
Amyloplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.844
CRCGN016_MCF10A.TP53.M_24H:O19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.08557
Brain - Nucleus accumbens (basal ganglia)	GTEx Tissue Gene Expression Profiles 2023	1.0	6.52211
BRD-K75275329	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.17482
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7432-11A-01R-2132-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.6905
SIMA	CCLE Cell Line Gene Expression Profiles	-1.0	-2.09607
dorsolateral prefrontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.934659
posteroventral (inferior) parietal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1758
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4456
salivary gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K92012390	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.12439
G3BP1	Pathway Commons Protein-Protein Interactions	1.0	null
methazolamide-2733	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.02076
Tuberculosis	DisGeNET Gene-Disease Associations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A6AW-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRD-K79355381	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12978
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5109
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6909
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4289
U266B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76056
aminophylline-3036	CMAP Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
BRD-K72709319	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57841
BRD-K35780971	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53391
inner SZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.63286
496100576_HIP_dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.39446
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6301
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
BRD-K24070365	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.67335
Sporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.073
Etioplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.731
BRD-K97985992	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.44583
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1779
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053634
HCC2157	CCLE Cell Line Gene CNV Profiles	-1.0	-2.27989
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
BRD-K92759025	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01165
vascular bundle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.362273
vascular tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.22415
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4915
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052139
DVL3	Pathway Commons Protein-Protein Interactions	1.0	null
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7855
hsa-miR-4288	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
paravermis of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01337
crystalloid	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.385051
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056226
cuneate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13375
NEURL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87683
UPF3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06883
membrane-bounded vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
BRD-K25236390	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.47882
DVL2	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K69375224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16963
Amylin receptor complex 3	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.641
ALVA31	BioGPS Cell Line Gene Expression Profiles	1.0	0.951872
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC9174882-EMMM-14-e15816-s002.xlsx-ThCell_GeneSigs-GSE24574_BCL6_HIGH_TFH_VS_NAIVE_CD4_TCELL_UP_BCL6	Rummagene Transcription Factor Associations 2026	1.0	null
oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.62991
mediodorsal nucleus of thalamus_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.12682
Squamous Cell Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
DAOY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46005
BRD-K86914375	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.83293
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102246
regulation of sensory perception of pain	GO Biological Process Annotations 2025	1.0	null
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39V-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Retinitis pigmentosa 51	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.921502
Nephroblastoma	DisGeNET Gene-Disease Associations	1.0	null
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.794895
vesicle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
MEF2A	JASPAR Predicted Transcription Factor Targets	1.0	null
Tooth enamel	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.616
eldeline-3925	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.081997
BRD-K87412446	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.11888
root nodule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.320591
AP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1678
Triple-Negative Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
BRD-K15387690	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.46958
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.952
BRD-K29549246	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02746
GM97	BioGPS Cell Line Gene Expression Profiles	1.0	1.25883
extracellular vesicular exosome	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.6537
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.543
EBF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.53906
Monoclonal Gammopathy Of Undetermined Significance	DisGeNET Gene-Disease Associations	1.0	null
Organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.246
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6481
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3362
BRD-K25127909	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.78909
CRCGN017_MCF10A.TP53.M_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.52621
BRD-K09732051	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.42896
Digestive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.625
cortical granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.377354
MTHFR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11315
BRD-K11741103	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.33284
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2312
BRD-K59523233	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.67635
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
midline nuclear complex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.9188
CRCGN015_MCF10A.WT.HP_24H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.95897
CERS6	LINCS L1000 CMAP CRISPR Knockout Consensus Signatures	1.0	0.00547282
BRD-K13204142	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.20106
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7119
hsa-miR-4695-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
USO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13832
BRD-K26612358	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.73421
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
ventromedial hypothalamic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.882907
Subrhabdomeral cisterna	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.331
striatum_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.10155
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
pralidoxim	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.76551
BRD-K38617061	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54842
Megasporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.118
inner SZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.901637
paraventricular nucleus of hypothalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.922419
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
BRD-K54179521	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.10604
BRD-K35517098	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04936
PATU8902	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36056
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.74393
COLO-320-HSR	GDSC Cell Line Gene Expression Profiles	1.0	1.76867
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.5425
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4133
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61791
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32217
ISHIKAWAHERAKLIO02ER	CCLE Cell Line Gene Expression Profiles	1.0	2.04755
Hyperlysinemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.08
BRD-K62935726	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.51648
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338177
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
BRD-K05221385	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.41104
BRD-K05374764	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.12668
peptidase inhibitor activity	GO Molecular Function Annotations 2025	1.0	null
PMC10115638-41591_2023_2255_MOESM4_ESM.xlsx-HGG_MYCN_deletions-Unnamed_4_MYCN	Rummagene Transcription Factor Associations 2026	1.0	null
inner SZ in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15425
BRD-K83047454	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.70527
UCP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.10632
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
SNU324	CCLE Cell Line Gene Expression Profiles	-1.0	-1.65944
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6418
primary auditory cortex (core)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.37587
NCI-H28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.36372
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73909
BRD-K41185648	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.05934
BRD-K96023136	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.36759
VZ in subcallosal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.946272
hsa-miR-632	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.900959
BRD-K10954923	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.01053
secondary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.18449
Small intestine	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BRD-K56054222	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.82758
CRCGN012_HEPG2_24H:J20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19859
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1476
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.590036
hsa-miR-490-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.997906
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048044
at95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.431
BRD-K68178119	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.57659
BRD-A82394575	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.011
BRD-K47804666	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2702
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3978
stromal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.220604
BRD-K74363294	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.71836
exocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
AB81 (BRCA1)	NURSA Protein Complexes	1.0	null
BRD-K75220555	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.26555
lateral hemisphere of cerebellum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.69895
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052635
Primary Lesion	DisGeNET Gene-Phenotype Associations	1.0	null
endopeptidase regulator activity	GO Molecular Function Annotations 2025	1.0	null
MRPS10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86335
2313287	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82999
LN215	CCLE Cell Line Gene Expression Profiles	1.0	1.42769
CRCGN015_MCF10A_48H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.17132
peptidase inhibitor activity	GO Molecular Function Annotations 2023	1.0	null
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051742
vacuolar membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.100754
endopeptidase inhibitor activity	GO Molecular Function Annotations 2025	1.0	null
ONECUT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3542
primary visual cortex (striate cortex, area V1/17)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.843949
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.076803
CRCGN009_HEPG2_24H:I19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.48644
GATA5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2593
hsa-miR-1321	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
PC3	CCLE Cell Line Gene CNV Profiles	1.0	1.46613
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.296931
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051943
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.322414
upper (rostral) rhombic lip_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.74359
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.19135
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.58486
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.8259
PMC8766486-42003_2021_2990_MOESM3_ESM.xlsx-ST18-Supplementary_Data_18_Gene_burden_for_deletions_by_subtype_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.61
organelle lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.085832
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.16929
U251MG	CCLE Cell Line Gene CNV Profiles	1.0	2.40881
morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.096509
H2AC8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07012
BRD-K89459607	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.02813
BRD-A67254212	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.33152
BRD-K03916755	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.04268
BRD-K62833799	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.15865
Reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.417
Mesothelioma_MESO_TCGA-SH-A7BH-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.5558
orbital frontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04866
Brain Lower Grade Glioma_LGG_TCGA-CS-5396-01A-02R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100635_HIP_dementia_TBI_77_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.09097
GSK3B_knockdown_202_GDS4305	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.98567
ZNF607	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.63114
vesicle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.096759
monolayer-surrounded lipid storage body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.385
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
piracetam-5043	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
CRCGN017_MCF10A.WT.HP_24H:P17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.03115
HCC-44	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BRD-K17293545	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.22674
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.605284
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4245
CRCGN017_MCF10A.WT.HP_24H:P19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.98105
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H4-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neck	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.491
CRCGN017_MCF10A.WT.HP_24H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.18905
BRD-K47001624	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.49412
central nuclear group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.96968
endoplasmic reticulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.490539
Lung adenocarcinoma_LUAD_TCGA-44-6145-01A-11R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942422
Inferior frontal gyrus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.77
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.4608
BRD-K35026224	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16841
subparafascicular nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.17685
CRCGN014_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.15483
binding	GO Molecular Function Annotations 2015	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942422
posterior (caudal) superior temporal cortex (area 22c)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16155
NCI-H740	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H1048	GDSC Cell Line Gene Expression Profiles	1.0	1.81146
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.364
CRCGN016_MCF10A.WT.HP_24H:F05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.07721
Cytoplasmic ubiquitin ligase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.712
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.415
hsa-miR-4519	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
BRD-K59239787	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40997
BRD-K74963702	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.53342
Pancreatic adenocarcinoma_PAAD_TCGA-F2-7273-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06908
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.553078
CRCGN016_MCF10A.TP53.M_24H:P18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.34625
mouth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.558457
PCBP1	Pathway Commons Protein-Protein Interactions	1.0	null
BRD-K48407262	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.16565
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.19623
hippocampus (hippocampal formation)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.858716
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.04116
SUDHL6	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68407
medial septal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.973605
cefalotin-2517	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.085
BRD-A25243629	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.80219
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8898
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986828
Saliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.041
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0023
CRCGN016_MCF10A.TP53.M_24H:O13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.48339
EFM19	CCLE Cell Line Gene CNV Profiles	1.0	1.41598
BRD-K65427501	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.60142
BRD-K13445266	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.04278
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932401
BRD-K55662526	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.11564
BRD-K44403120	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14116
BRD-K57724551	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.08589
S100A14	Pathway Commons Protein-Protein Interactions	1.0	null
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.16027
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5885
CRCGN017_MCF10A.TP53.M_24H:F01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.1005
rostral ventral respiratory cell group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11306
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4868
cell division site	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.388523
COLO320	CCLE Cell Line Gene Expression Profiles	1.0	1.55029
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9684
BRD-K19100834	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.7496
BRD-K65705295	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.85053
BRD-K61491580	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.03002
BRD-K81515704	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.15136
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7836
BRD-K61039403	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.54637
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055206
BRD-K36855468	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.28312
BRD-K72519622	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.05969
Prostate adenocarcinoma_PRAD_TCGA-EJ-7781-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VZ in subgenual cingulate neocortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.0253
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05245
BRD-K62795540	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.40876
protein storage vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.80707
18537972-TableS4	GeneSigDB Published Gene Signatures	1.0	null
Kidney Chromophobe_KICH_TCGA-KO-8405-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CRCGN016_MCF10A.TP53.M_24H:M12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.42856
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.74192
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6916
NCIH1581	CCLE Cell Line Gene Expression Profiles	1.0	1.67561
SNU119	CCLE Cell Line Gene Expression Profiles	-1.0	-2.09527
SOX17_01_360	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59905
BRD-K03205303	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.0075
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1548
PEER	CCLE Cell Line Gene CNV Profiles	1.0	1.80433
endoplasmic reticulum lumen	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.748189
hsa-miR-3152-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
BRD-K03936430	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19423
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053999
alveolar bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.224398
GSE70935_2_v_0_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.246
BRD-K84975143	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.1352
small intestine	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BRD-K98264372	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04578
extracellular region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.226864
BRD-K43719900	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.40165
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2563
Addictive Behavior	DisGeNET Gene-Phenotype Associations	1.0	null
BRD-K53821452	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.21705
blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354084
iproniazid-5458	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6219
S100A9 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.501
stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182336
BRD-K80782159	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.91698
Tumor Vasculature	DisGeNET Gene-Phenotype Associations	1.0	null
SK-MES-1	GDSC Cell Line Gene Expression Profiles	1.0	1.94492
EMILIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36449
IZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.932525
microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236627
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8694
BRD-K28774883	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.59531
SLC25A35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.82524
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6701
extracellular space	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.237908
exocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083677
endosperm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.40131
BRD-K41999717	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.5714
vesicle	GO Cellular Component Annotations 2015	1.0	null
BRD-K87532481	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.19301
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6928
SHROOM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.36348
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.3289
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7564
Brain Lower Grade Glioma_LGG_TCGA-DU-A76R-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-P8-A5KD-11A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hepatoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.332294
salivary gland	HPA Tissue Gene Expression Profiles	1.0	2.24804
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9725
GSE80098,GSE80366_0_v_4_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
A673	CCLE Cell Line Gene Expression Profiles	1.0	1.71352
Thalamus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.427
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5941
mouth	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CEP72	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.05569
BRD-K19662956	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27064
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
plant-type vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.5656
NCIH146	CCLE Cell Line Gene CNV Profiles	1.0	1.64027
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7003
amygdaloid complex_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.832959
BRD-A89681034	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.91352
SNB19	CCLE Cell Line Gene CNV Profiles	1.0	2.50415
CRCGN008_HEPG2_24H:A04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.25555
BRD-K80233876	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.14442
Heart	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.118
hsa-miR-3907	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Kidney renal clear cell carcinoma_KIRC_TCGA-AK-3427-01A-01R-0864-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.919799
BMI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.51158
GSE116492,GSE116495_3_v_2_stag2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Kidney Chromophobe_KICH_TCGA-KL-8338-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10248509-Data_Sheet_5.CSV--GSE66724_DE-Genes_AND_GSE41177_DE-Genes_NOT_Autophagy_NOT_GSE58294_DE-genes_NR4A2	Rummagene Transcription Factor Associations 2026	1.0	null
BRD-K10943878	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.07587
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0504
PRICKLE1	Pathway Commons Protein-Protein Interactions	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23834
BRD-K59093791	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.27676
ventrolateral prefrontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.27125
DVL1	Pathway Commons Protein-Protein Interactions	1.0	null
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32572
22RV1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ETNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.33914
BRD-K52232548	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10202
SP in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.13956
BRD-A90289676	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.10211
BRD-K68364310	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.00152
BRD-K73808079	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	4.30248
CRCGN016_MCF10A.TP53.M_24H:F11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.57926
PRM2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66904
Mel-18_KD_GDS2724_103_human_DAOY medulloblastoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
TADA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.69777
periodontal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.193285
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18883
BRD-K59002219	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.04082
BL2356 (MLF1)	NURSA Protein Complexes	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4208
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942422
BRD-A30547447	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.2723
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9677
NCIH510	CCLE Cell Line Gene CNV Profiles	1.0	1.80725
BMI1_DN_MEL18_DN.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	-1.0	null
doxycycline-2737	CMAP Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Lip And Oral Cavity Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
BRD-K48780709	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	-1.0	-3.45281
BRD-K52660225	LINCS L1000 CMAP Chemical Perturbation Consensus Signatures	1.0	3.01954
HCC2185	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.739703
CAPRIN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.06399
cSARS Bat SRBD_48Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.49128
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3641
pituitary	GTEx Tissue Gene Expression Profiles	1.0	1.03741
cervix uteri	GTEx Tissue Gene Expression Profiles	-1.0	-0.892019
Kidney Chromophobe_KICH_TCGA-KN-8418-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adult Glioblastoma	DisGeNET Gene-Disease Associations	1.0	null
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.993278
CRCGN015_MCF10A.TP53.M_24H:C07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.6925
COLO800	CCLE Cell Line Gene Expression Profiles	-1.0	-3.99874
Exocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0