association	dataset	threshold value	standardized value
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7679
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01418
COR-L311	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
HCC2157	CCLE Cell Line Gene CNV Profiles	1.0	1.65809
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69355
CMK	CCLE Cell Line Gene CNV Profiles	1.0	1.37384
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886193
PC14	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00403
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978867
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01418
HCC70	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48642
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26403
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16039
T47D	CCLE Cell Line Gene CNV Profiles	1.0	1.49288
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86467
SNU308	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60689
EW8	CCLE Cell Line Gene CNV Profiles	1.0	1.77544
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83825
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.932241
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21829
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.91134
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978867
SUPM2	CCLE Cell Line Gene CNV Profiles	1.0	1.72422
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871787
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.35945
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.998727
SNU5	CCLE Cell Line Gene CNV Profiles	1.0	1.51565
HDQ-P1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
LC1SQSF	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
NCIH2073	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3463
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37374
HCC202	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
HCC2279	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64107
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08372
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97962
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.86616
CMK115	CCLE Cell Line Gene CNV Profiles	1.0	1.62841
SQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71627
LUDLU1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41584
CTCF	ENCODE Transcription Factor Targets	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02678
NCIH1703	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40433
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963469
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.62723
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21829
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2322
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04648
HCC202	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76646
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03547
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55022
DANG	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51993
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.51104
H3K27me3_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978867
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11574
HCC1599	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886193
SUDHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92896
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884559
EFO21	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09285
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839837
NCIH747	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79016
RNF2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.98237
MYC_endothelial cell of umbilical vein_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
SPI1	ENCODE Transcription Factor Targets	1.0	null
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17647
LN443	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38234
MYC	ENCODE Transcription Factor Targets	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36674
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21829
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67996
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10639
MDAMB361	CCLE Cell Line Gene CNV Profiles	1.0	1.97858
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10639
RNF2	ENCODE Transcription Factor Targets	1.0	null
KMH-2	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08372
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.92907
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839837
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62305
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886193
MIAPACA2	CCLE Cell Line Gene CNV Profiles	1.0	1.56096
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.932302
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	2.20581
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09523
CH157MN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44473
H3K27me3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01152
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.871787
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
ESR1_T47D_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MYC_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21997
H3K27me3_A549_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43066
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.39516
RBBP5	ENCODE Transcription Factor Targets	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979393
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50374
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.45704
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10639
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27921
HCC95	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3662
TE4	CCLE Cell Line Gene CNV Profiles	1.0	1.96075
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93305
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	1.56276
EZH2	ENCODE Transcription Factor Targets	1.0	null
SPI1_GM12891_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21829
NCCSTCK140	CCLE Cell Line Gene CNV Profiles	1.0	1.67304
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45116
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01152
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45232
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01152
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2824
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08372
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57243
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	2.59998
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.16481
ESR1	ENCODE Transcription Factor Targets	1.0	null
COV318	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
JHOS2	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23215
H3K27me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
42-MG-BA	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.9644
COLO680N	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48184
H2AFZ_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SPI1_HL-60_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CORL23	CCLE Cell Line Gene CNV Profiles	-1.0	-1.32032
CTCF_LNCaP clone FGC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15648
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23215
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.83825
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.25188
NCIH727	CCLE Cell Line Gene CNV Profiles	1.0	1.38682
POLR2AphosphoS5_H1-hESC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AU565	CCLE Cell Line Gene CNV Profiles	1.0	1.37927
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97962
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886193
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.93305
HCC1954	CCLE Cell Line Gene CNV Profiles	1.0	2.09847
HOS	CCLE Cell Line Gene CNV Profiles	1.0	1.87315
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.884559
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.81605
TT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.8092
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886193
SKBR3	CCLE Cell Line Gene CNV Profiles	1.0	1.43078
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97962
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2322
FU97	CCLE Cell Line Gene CNV Profiles	1.0	1.45574
UMUC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5408