association	dataset	threshold value	standardized value
JHOS2	CCLE Cell Line Gene CNV Profiles	1.0	2.00702
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863598
JHOS4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54489
OCUM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32717
DMS454	CCLE Cell Line Gene CNV Profiles	1.0	1.6909
IALM	CCLE Cell Line Gene CNV Profiles	1.0	1.47277
NCIH889	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86424
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37485
H3K9me3_U2OS_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44154
AU565	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41999
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09392
MPP89	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67129
MFE280	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20249
1321N1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.50045
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59856
STAT3	MotifMap Predicted Transcription Factor Targets	1.0	null
CTCF_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47153
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00743
HARA	CCLE Cell Line Gene CNV Profiles	1.0	1.44031
POLR2AphosphoS5_neural cell_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EB2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37178
RPMI-7951	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.09583
H3K9me3_K562_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94089
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.949594
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29165
NCIH1648	CCLE Cell Line Gene CNV Profiles	1.0	1.4512
NCIH747	CCLE Cell Line Gene CNV Profiles	1.0	1.61305
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03544
BEN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9887
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.991387
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963156
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03319
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2458
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921076
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5001-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39521
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877713
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80902
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10298
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.64672
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05024
LC1SQSF	CCLE Cell Line Gene CNV Profiles	1.0	1.86773
DMS114	CCLE Cell Line Gene CNV Profiles	1.0	1.33342
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	1.93509
kidney	GTEx Tissue Gene Expression Profiles	-1.0	-1.33364
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40064
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.841174
MAFA	MotifMap Predicted Transcription Factor Targets	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05093
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20921
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45087
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.877713
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11192
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.16957
BT20	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905716
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.63452
TAL1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.68357
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.863598
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35883
BT549	CCLE Cell Line Gene CNV Profiles	1.0	1.55551
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11192
PANC0403	CCLE Cell Line Gene CNV Profiles	1.0	1.37611
CAL-85-1	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921076
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10188
IGR1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76185
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.43965
HCC1599	CCLE Cell Line Gene CNV Profiles	1.0	2.43323
VCAP	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59362
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
OVCAR433	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64725
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38771
59M	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33312
SCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.81114
SNU601	CCLE Cell Line Gene CNV Profiles	1.0	1.78431
CHD1	ENCODE Transcription Factor Targets	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.98973
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10188
CTCF	ENCODE Transcription Factor Targets	1.0	null
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47088
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.905716
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8291
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.57686
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	2.09602
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83055
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
NMC-G1	COSMIC Cell Line Gene CNV Profiles	1.0	2.14311
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.71684
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03319
SAP30	ENCODE Transcription Factor Targets	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72945
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49729
SNU449	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09315
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8291
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48926
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00743
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9079
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.824502
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05024
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.33364
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	1.41764
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.44434
537 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47088
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15434
MDA-MB-453	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
HCC202	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.906393
H3K27me3_Adipose Nuclei	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.840459
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878408
NCIH841	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19992
U-2 OS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963217
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19864
TE10	CCLE Cell Line Gene CNV Profiles	1.0	1.65255
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.9079
HCC1187	CCLE Cell Line Gene CNV Profiles	1.0	1.72461
RPMI7951	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40222
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11937
HCC1937	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47153
NCIH1299	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34075
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.921076
SNU308	CCLE Cell Line Gene CNV Profiles	1.0	1.52733
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06252
H3K9ac_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32641
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18974
JHOS-4	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.12964
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	2.47236
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.58834
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.53803
POLR2A	ENCODE Transcription Factor Targets	1.0	null
RH30	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58304
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.20921
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03544
SH4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36454
SW 1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.27881
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.991387
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A172	CCLE Cell Line Gene CNV Profiles	-1.0	-1.94191
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05024
SW1573	CCLE Cell Line Gene CNV Profiles	-1.0	-2.35167
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.19864
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.41764
H2AFZ_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.963834
A3KAW	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48444
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.948819
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
KYSE180	CCLE Cell Line Gene CNV Profiles	1.0	1.34422