association	dataset	threshold value	standardized value
496100341_TCx_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23562
non-syndromic X-linked intellectual disability 92	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.088
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	138.469
496100542_PCx_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.47926
SETX	Pathway Commons Protein-Protein Interactions	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
FOSL1::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9128
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37513
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0566
Cob	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
hsa-miR-2110	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE178714_1_v_0_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
AP4E1	Pathway Commons Protein-Protein Interactions	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2555
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.8645
FN1	Pathway Commons Protein-Protein Interactions	1.0	null
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11166
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.0379
DCC	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61274
PA-TU-8988S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.90801
gonad	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GATA2	ENCODE Transcription Factor Targets	1.0	null
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.9796
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100609_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.87895
HCC366	DepMap CRISPR Gene Dependency	1.0	2.02323
Megagametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.828
brain	GTEx Tissue Gene Expression Profiles	1.0	2.18987
APOC3	Pathway Commons Protein-Protein Interactions	1.0	null
NOZ	DepMap CRISPR Gene Dependency	1.0	2.30833
Nde	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
single-organism developmental process	GO Biological Process Annotations 2015	1.0	null
GSE185519_4_v_7_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
AP1M1	Pathway Commons Protein-Protein Interactions	1.0	null
BBC3	Pathway Commons Protein-Protein Interactions	1.0	null
SACS	Pathway Commons Protein-Protein Interactions	1.0	null
EGR1	JASPAR Predicted Transcription Factor Targets	1.0	null
CDC45	Pathway Commons Protein-Protein Interactions	1.0	null
CFH	Pathway Commons Protein-Protein Interactions	1.0	null
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.112
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
hsa-miR-186	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
CTCF_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Bloodstream form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.123
gamete generation	GO Biological Process Annotations 2015	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88836
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6355
SPAST	Pathway Commons Protein-Protein Interactions	1.0	null
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56423
Aerial part	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.944
IGKC	Pathway Commons Protein-Protein Interactions	1.0	null
PF4V1	Pathway Commons Protein-Protein Interactions	1.0	null
RORB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9832
SNU-449	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.3688
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0391
DICER1	Pathway Commons Protein-Protein Interactions	1.0	null
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
KRT9	Pathway Commons Protein-Protein Interactions	1.0	null
proton-transporting two-sector ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.949
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	127.035
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76612
CTCF	ENCODE Transcription Factor Targets	1.0	null
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88836
CHKB	Pathway Commons Protein-Protein Interactions	1.0	null
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Procyclic form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.809
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ciliary pocket	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.298
formation	GeneRIF Biological Term Annotations	1.0	null
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.00258
GABBR1	Pathway Commons Protein-Protein Interactions	1.0	null
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8897
GSN	Pathway Commons Protein-Protein Interactions	1.0	null
Pollen tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.209
syntaxin	GeneRIF Biological Term Annotations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43771
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70457
FAM71E2	Pathway Commons Protein-Protein Interactions	1.0	null
Spinal cord glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.475
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3692
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.6553
Focal dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.293
SLC25A13	Pathway Commons Protein-Protein Interactions	1.0	null
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2976
vitro	GeneRIF Biological Term Annotations	1.0	null
GSE125219,GSE125221_5_v_0_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Parasitic infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.48556
PANC 08.13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.947528
SERPING1	Pathway Commons Protein-Protein Interactions	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61274
KRT14	Pathway Commons Protein-Protein Interactions	1.0	null
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
UPCISCC040	DepMap CRISPR Gene Dependency	1.0	2.28394
496100284_FWM_probable Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.55568
JARID2	Pathway Commons Protein-Protein Interactions	1.0	null
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
heart	GTEx Tissue Gene Expression Profiles	-1.0	-1.17497
CFB	Pathway Commons Protein-Protein Interactions	1.0	null
HBA2	Pathway Commons Protein-Protein Interactions	1.0	null
YD15	DepMap CRISPR Gene Dependency	1.0	2.1233
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE212762_1_v_2_smarcb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20759
GSE185519_4_v_2_gilteritinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
RANBP3	Pathway Commons Protein-Protein Interactions	1.0	null
496100546_TCx_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.43471
testis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8472
NCIH526	DepMap CRISPR Gene Dependency	1.0	2.07782
Kinetoplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.191
TSC22D1	Pathway Commons Protein-Protein Interactions	1.0	null
Ciliary pocket collar	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.705
Flagellum attachment zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.745
APOA2	Pathway Commons Protein-Protein Interactions	1.0	null
NLRC4	Pathway Commons Protein-Protein Interactions	1.0	null
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
HCC33	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972887
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.5319
PCED1B	Pathway Commons Protein-Protein Interactions	1.0	null
NCOA3	Pathway Commons Protein-Protein Interactions	1.0	null
Trypanosomoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
PDZRN4	Pathway Commons Protein-Protein Interactions	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Sleeping sickness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.781
GSE172494_3_v_1_nicotinamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
DGKG	Pathway Commons Protein-Protein Interactions	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Tripartite attachment complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.008
TTN	Pathway Commons Protein-Protein Interactions	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.985993
Epimastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
496100314_HIP_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.96283
Cerebral ventricle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.128
Pollen coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.764
Congenital vertical talus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
NCIH209	DepMap CRISPR Gene Dependency	1.0	2.1809
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Axonemal outer doublet	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.618
Endosomal scaffold complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.677
SH3BP5	Pathway Commons Protein-Protein Interactions	1.0	null
spermatogenesis	GO Biological Process Annotations 2015	1.0	null
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
KP-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06352
Organellar small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.813
hsa-miR-4712-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28891
SISO	DepMap CRISPR Gene Dependency	1.0	2.19793
CNOT1	Pathway Commons Protein-Protein Interactions	1.0	null
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20759
hsa-miR-4752	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
MYLK3	Pathway Commons Protein-Protein Interactions	1.0	null
ADRA1B	Pathway Commons Protein-Protein Interactions	1.0	null
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.836
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27615
F2	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.996
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2301
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TTPAL	Pathway Commons Protein-Protein Interactions	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
Anchoring collagen complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.546
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3071
HCC2270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88836
SPIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.1361
SLC9A8	Pathway Commons Protein-Protein Interactions	1.0	null
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8123
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
hsa-miR-3191	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9088
Proboscis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.893
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	120.113
EFO27	DepMap CRISPR Gene Dependency	1.0	2.38329
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.2844
RERFLCAD1	DepMap CRISPR Gene Dependency	1.0	2.18075
NCI-H716	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39853
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3047
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22937
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3174
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3931
D341Med	DepMap CRISPR Gene Dependency	1.0	2.1435
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26959
CEP44	Pathway Commons Protein-Protein Interactions	1.0	null
GCN1L1	Pathway Commons Protein-Protein Interactions	1.0	null
POU2F2_GM12878_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
mRNA editing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.229
SCAF1	Pathway Commons Protein-Protein Interactions	1.0	null
High grade ependymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.217
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5178
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
C2BBE1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0279
Rootlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.513
Microgametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.684
Axonemal microtubule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.993
TIAM1	Pathway Commons Protein-Protein Interactions	1.0	null
BT-549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
SUM229PE	DepMap CRISPR Gene Dependency	1.0	2.24349
PRSS3	Pathway Commons Protein-Protein Interactions	1.0	null
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3814
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6647
HslUV protease complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.288
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100395_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.88323
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06352
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4345
Kinetoplastid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.89
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
HPX	Pathway Commons Protein-Protein Interactions	1.0	null
KRT10	Pathway Commons Protein-Protein Interactions	1.0	null
496100374_HIP_possible Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.56202
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30428
PCDH1	Pathway Commons Protein-Protein Interactions	1.0	null
FGA	Pathway Commons Protein-Protein Interactions	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.671
proton-transporting ATP synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.954
HCC461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
hsa-miR-548ac	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Seed coat	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.899
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3357
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0477
hsa-miR-548aa	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
ZNF460	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	104.095
QTRTD1	Pathway Commons Protein-Protein Interactions	1.0	null
Trypanosomoid form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.647
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.2517
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0346
Mitochondrial mRNA editing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.348
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.9767
RYR2	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF135	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.115
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.2848
496100614_PCx_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.07717
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
HOP-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828356
PMC11551467-pnas.2414963121.sapp.pdf-10-ZNF76_ZNF76	Rummagene Transcription Factor Associations 2026	1.0	null
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8989
CTAGE5	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	139.259
non-syndromic X-linked intellectual disability 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.99
TLN2	Pathway Commons Protein-Protein Interactions	1.0	null
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878314
AHSG	Pathway Commons Protein-Protein Interactions	1.0	null
HMC18	DepMap CRISPR Gene Dependency	1.0	2.1229
Dhori Virus_24Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.19818
4647 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.597
APOA4	Pathway Commons Protein-Protein Interactions	1.0	null
T98G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
CAMTA1	Pathway Commons Protein-Protein Interactions	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.3676
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
Wop	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.221
SARS-CoV_24Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.32752
DCD	Pathway Commons Protein-Protein Interactions	1.0	null
LDB3	Pathway Commons Protein-Protein Interactions	1.0	null
Metacyclic form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.726
HCC1419	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.52011
DMD	Pathway Commons Protein-Protein Interactions	1.0	null
Proventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.519
HCC461	DepMap CRISPR Gene Dependency	1.0	2.22073
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
TRAPPC11	Pathway Commons Protein-Protein Interactions	1.0	null
PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_1_DLX4	Rummagene Transcription Factor Associations 2026	1.0	null
Ciliary pocket membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.889
SC-30169 (NR0B2)	NURSA Protein Complexes	1.0	null
A375SKINCJ2	DepMap CRISPR Gene Dependency	1.0	2.13975
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.1301
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1575
IGDCC4	Pathway Commons Protein-Protein Interactions	1.0	null
EXOC6	Pathway Commons Protein-Protein Interactions	1.0	null
GSE146612_2_v_0_amiodarone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
F5	DepMap CRISPR Gene Dependency	1.0	2.15666
NPHS1	Pathway Commons Protein-Protein Interactions	1.0	null
PLAG1	Pathway Commons Protein-Protein Interactions	1.0	null
CLCA2	Pathway Commons Protein-Protein Interactions	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878314
Cervical dystonia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.55
Lassa Fever Virus_4hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.26924
hsa-miR-544	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
SBF transcription complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.578
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.3734
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6541
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.1148
Tapetum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.53
NCIH2009	DepMap CRISPR Gene Dependency	1.0	2.21322
APOC1	Pathway Commons Protein-Protein Interactions	1.0	null
Vegetative stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
PMC4387713-supp_gad.255984.114_Table_S3.xlsx-S3B-Up_Dpy30_KD-Unnamed_1_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GRAP2	Pathway Commons Protein-Protein Interactions	1.0	null
Tentacle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.358
skin	GTEx Tissue Gene Expression Profiles	-1.0	-2.10021
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9711
COLO 792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66176
ITGB5	Pathway Commons Protein-Protein Interactions	1.0	null
ERMES complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.124
NCIH2126	DepMap CRISPR Gene Dependency	1.0	2.16574
Megasporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.824
chr9_61182342_G_T_b38	GTEx eQTL 2025	1.0	1.3724
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.136
496100397_PCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.36597
SLC1A5	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H2347	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.88598
U251MG	DepMap CRISPR Gene Dependency	1.0	2.25237
P31FUJ	DepMap CRISPR Gene Dependency	1.0	2.03605
Spinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.336
496100364_TCx_possible Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.72245
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
PLA2G4F	Pathway Commons Protein-Protein Interactions	1.0	null
496100342_PCx_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.42723
cellular developmental process	GO Biological Process Annotations 2015	1.0	null
Bilobe structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.266
male gamete generation	GO Biological Process Annotations 2015	1.0	null
DMRTA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7181
496100402_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.14934
F7	Pathway Commons Protein-Protein Interactions	1.0	null
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE129153_0_v_1_forskolin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hsa-miR-376c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Methyl accepting chemotaxis protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.564
TEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7336
OR3A2	Pathway Commons Protein-Protein Interactions	1.0	null
KLK3	Pathway Commons Protein-Protein Interactions	1.0	null
Fascioliasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.491
SGOL2	Pathway Commons Protein-Protein Interactions	1.0	null
PPBP	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-4684-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50996
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.612
AGA	Pathway Commons Protein-Protein Interactions	1.0	null
interacts	GeneRIF Biological Term Annotations	1.0	null
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
Trypanosomiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20759
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
Translation repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.03
KRT5	Pathway Commons Protein-Protein Interactions	1.0	null
GFAP	Pathway Commons Protein-Protein Interactions	1.0	null
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7623
RAF1_overexpression_220_GSE42964	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.48801
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
GSE162015_1_v_0_nfkb1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8229
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975443
496100585_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.29759
ICC9	DepMap CRISPR Gene Dependency	1.0	2.41455
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.7461
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828356
APOA1	Pathway Commons Protein-Protein Interactions	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28891
CROT	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF232	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H441	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88836
KIAA1551	Pathway Commons Protein-Protein Interactions	1.0	null
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1923
non-syndromic X-linked intellectual disability	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
single-organism process	GO Biological Process Annotations 2015	1.0	null
Protozoan form	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.477
ERI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.61342
POU2F2	ENCODE Transcription Factor Targets	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
Attachment organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.997
male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3652
BT-20	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.947528
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.135
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4722
OVCA 420	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975443
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
RKN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36196
496100663_TCx_no dementia_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03977
CST3	Pathway Commons Protein-Protein Interactions	1.0	null
GSE147876,GSE147877_2_v_5_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TTR	Pathway Commons Protein-Protein Interactions	1.0	null
Mitochondrial respiratory chain complex III	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.747
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2622
PEG3	Pathway Commons Protein-Protein Interactions	1.0	null
RAF1_activemutant_219_GSE42964	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	2.13599
hif2a_16565084_mcf7_lof_human_gpl2507_gds2761	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.229963
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
ZNF292	Pathway Commons Protein-Protein Interactions	1.0	null
DERL1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE193351_1_v_0_ruxolitinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hsa-miR-3190	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Peritrophic membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.752
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5195
likely	GeneRIF Biological Term Annotations	1.0	null
Metacercaria	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.614
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4712
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50996
GSE169152_3_v_2_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE206226_2_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ST13	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL1::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0278
hsa-miR-4747-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
brl1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.942
PANC1	DepMap CRISPR Gene Dependency	1.0	2.12089
Lassa Fever Virus_24hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.61331
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.971408
GRK5	Pathway Commons Protein-Protein Interactions	1.0	null
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61274
CFD	Pathway Commons Protein-Protein Interactions	1.0	null
ITIH1	Pathway Commons Protein-Protein Interactions	1.0	null
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	95.0704
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4645
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8352
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.55199
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.76612
GSE169205_3_v_2_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
OR2T6	Pathway Commons Protein-Protein Interactions	1.0	null
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	87.4394
OBSL1	Pathway Commons Protein-Protein Interactions	1.0	null
IRF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6711
betaactin	GeneRIF Biological Term Annotations	1.0	null
59M	DepMap CRISPR Gene Dependency	1.0	2.12726
PALB2	Pathway Commons Protein-Protein Interactions	1.0	null
ITGA2	Pathway Commons Protein-Protein Interactions	1.0	null
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
GJC2	Pathway Commons Protein-Protein Interactions	1.0	null
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5356
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68747
Kmp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.757
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	114.179
BARHL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0531
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1551
Parasitic protozoa infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.057
Opisthorchiasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.711
CA922	DepMap CRISPR Gene Dependency	1.0	2.0585
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
496100579_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.25334
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
CACNA1I	Pathway Commons Protein-Protein Interactions	1.0	null
VAESBJ	DepMap CRISPR Gene Dependency	1.0	2.22051
Neuronal ceroid lipofuscinosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
Ciliary necklace	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.693
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.972887
cell differentiation	GO Biological Process Annotations 2015	1.0	null
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
A427	DepMap CRISPR Gene Dependency	1.0	2.07146
CORL105	DepMap CRISPR Gene Dependency	1.0	2.22109
COLO 829	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.69135
PHC3	Pathway Commons Protein-Protein Interactions	1.0	null
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1497
BL1012 (ZHX1)	NURSA Protein Complexes	1.0	null
Frontoparietal cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
prostate	GTEx Tissue Gene Expression Profiles	1.0	1.20379
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.878314
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
CDCP1	Pathway Commons Protein-Protein Interactions	1.0	null
APOE	Pathway Commons Protein-Protein Interactions	1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0243
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
LAT	Pathway Commons Protein-Protein Interactions	1.0	null
MYL4	Pathway Commons Protein-Protein Interactions	1.0	null
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11166
TOV-112D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3794
NCIH441	DepMap CRISPR Gene Dependency	1.0	2.0761
hsa-miR-548z	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
Spinal cord ependymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.564
GSE169152_5_v_0_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
doxorubicin_homo sapiens_gpl10558_gse42531	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.846104
non-syndromic X-linked intellectual disability 91	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.108
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7019
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.51134
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.1367
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06352
CABLES1	Pathway Commons Protein-Protein Interactions	1.0	null
KCNMA1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE125219,GSE125221_5_v_2_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15687
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
SORBS3	Pathway Commons Protein-Protein Interactions	1.0	null
THRAP3	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	114.551
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975443
hsa-miR-548d-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.8467
KRT6B	Pathway Commons Protein-Protein Interactions	1.0	null
Supratentorial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.05
multicellular organismal reproductive process	GO Biological Process Annotations 2015	1.0	null
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7407
MIA PACA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06495
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.39853
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.948985
496100661_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.46259
NCI-H1623	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.975443
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
APOC2	Pathway Commons Protein-Protein Interactions	1.0	null
MDAMB468	DepMap CRISPR Gene Dependency	1.0	2.08593
GSE169205_3_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ATM	Pathway Commons Protein-Protein Interactions	1.0	null
Plant ovule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.824
UPCISCC026	DepMap CRISPR Gene Dependency	1.0	2.34997
KRT13	Pathway Commons Protein-Protein Interactions	1.0	null
GATA2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
COLO-818	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828356
SKRC31	DepMap CRISPR Gene Dependency	1.0	2.0599
Amyotrophic lateral sclerosis type 5	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.8978
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.739
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6145
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
NCIH2087	DepMap CRISPR Gene Dependency	1.0	2.13628
Domain of unknown function DUF4599	InterPro Predicted Protein Domain Annotations	1.0	null
membrane part	GO Cellular Component Annotations 2015	1.0	null
SCN5A	Pathway Commons Protein-Protein Interactions	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
KP4	DepMap CRISPR Gene Dependency	1.0	2.34274
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.15292
Subpellicular microtubule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.514
SLA2	Pathway Commons Protein-Protein Interactions	1.0	null
RANBP2	Pathway Commons Protein-Protein Interactions	1.0	null
Adult spinal cord ependymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.037
Storage vacuole	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.502
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.538
ALB	Pathway Commons Protein-Protein Interactions	1.0	null
Nematocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.964
PRSS1	Pathway Commons Protein-Protein Interactions	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9584
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3618
Miracidium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.287
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.6687
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.48
Cerebrum cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
HCC1599	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
GSE195559_8_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC11979751-table_s2_markers_elad055.xlsx-Melanoma_state_immune_markers-AP1_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
reproductive process	GO Biological Process Annotations 2015	1.0	null
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6378
IGHG1	Pathway Commons Protein-Protein Interactions	1.0	null
Bb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
Paraflagellar rod	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.969
Dihydrolipoyl dehydrogenase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.561
RLF	Pathway Commons Protein-Protein Interactions	1.0	null
Glycosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.353
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.165
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Tricarboxylic acid cycle enzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.42
Intraparietal sulcus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.701
developmental process	GO Biological Process Annotations 2015	1.0	null
AMPD3	Pathway Commons Protein-Protein Interactions	1.0	null
KRT1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE195559_8_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
KRT16	Pathway Commons Protein-Protein Interactions	1.0	null
DDB1	Pathway Commons Protein-Protein Interactions	1.0	null
Gastrodermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.881
NCIH1703	DepMap CRISPR Gene Dependency	1.0	2.06771
Antipodal site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.388
PDE4B	Pathway Commons Protein-Protein Interactions	1.0	null
single organism reproductive process	GO Biological Process Annotations 2015	1.0	null
hsa-miR-4652-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.71001
FAM156B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02947
GSE232558_0_v_2_fbxl12_human	RummaGEO Gene Perturbation Signatures	1.0	null
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.656
SUDHL4	DepMap CRISPR Gene Dependency	1.0	2.44155
GSE169152_5_v_4_ibrutinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OR8D2	Pathway Commons Protein-Protein Interactions	1.0	null
CRB1	Pathway Commons Protein-Protein Interactions	1.0	null
496100667_TCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.37632
HS-SULTAN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7714
KIAA0232	Pathway Commons Protein-Protein Interactions	1.0	null
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NUGC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04176
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6393
biological_process	GO Biological Process Annotations 2015	1.0	null
GSE186647,GSE217288_2_v_4_hnrnpc_human	RummaGEO Gene Perturbation Signatures	-1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06582
ALB	Hub Proteins Protein-Protein Interactions	1.0	null
Brain ependymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.577
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE169152_3_v_1_ibrutinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cytosolic proteasome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.035
HP	Pathway Commons Protein-Protein Interactions	1.0	null
wc1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.775
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0036
496100594_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.88704
cellular process	GO Biological Process Annotations 2015	1.0	null
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4398
Radial spoke head	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.634
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7769
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828356
DBP	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9939
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16484
cellular_component	GO Cellular Component Annotations 2015	1.0	null
NCI-H1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828356
KRT6A	Pathway Commons Protein-Protein Interactions	1.0	null
HCC2302	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.88972
functions	GeneRIF Biological Term Annotations	1.0	null
COV434	DepMap CRISPR Gene Dependency	1.0	2.08296
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8691
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16484
Mitochondrial small ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.814
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8772
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	0.928931
GI1	DepMap CRISPR Gene Dependency	1.0	2.32642