association	dataset	threshold value	standardized value
SZ in subgenual cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27431
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05124
NCI-H1793	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16618
Liposarcoma	DisGeNET Gene-Disease Associations	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.016
mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05387
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878063
fetus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
SPI1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Chondroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.711
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89547
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE216988,GSE216989_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9929
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.702
SG in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.08437
MZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.946434
gracile nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.86806
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.12601
PIP5K1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.68956
GSE154936_3_v_2_remdesivir_human	RummaGEO Drug Perturbation Signatures	1.0	null
pontine nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.12601
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.3252
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.353
Renal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9078
Crus I, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.54882
GSE219195_4_v_5_rbm12_human	RummaGEO Gene Perturbation Signatures	-1.0	null
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040465
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
Myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.35
Peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.739
GSE206516,GSE206518_6_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE239688_2_v_5_canagliflozin_human	RummaGEO Drug Perturbation Signatures	1.0	null
supraoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.35927
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39744
Nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
Carcinosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.322
Frond	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
g7	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.227
Non-Metastatic Childhood Soft Tissue Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
colo857	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.494
Bone marrow cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE169205_0_v_1_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
Organ system cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
embryonic fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.335233
lateral orbital frontal cortex (area 12/47)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.964339
Hemangiopericytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.063
Integument	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
mesoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.379123
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.331
GSE242199_2_v_11_ntrk2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01457
occipital pole, left, lateral aspect	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.02883
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.675
small nuclear ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.331342
GSE201309_5_v_7_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Vascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.961
magnocellular division of VA	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.32701
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870799
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24122
layer II of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.27758
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.361
Skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.954
III, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-2.46873
Prostate disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
496100345_FWM_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.72892
GSE135030_8_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01734
496100314_HIP_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.88529
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
Small cell osteogenic sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
Hemangiopericytic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.03
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
neural tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.393064
Liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.068
Bone cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
hsa-miR-518a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Ossifying fibromyxoid tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.438
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE169205_0_v_6_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
GSE235701,GSE261434_2_v_3_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.197
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.747
Neuroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.045
LAMA84	Achilles Cell Line Gene Essentiality Profiles	1.0	1.26489
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01734
GSE242199_9_v_0_ntrk2_human	RummaGEO Gene Perturbation Signatures	1.0	null
pg13	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.639
Malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.852
polymorphic layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29162
disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.559652
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7204
Reproductive system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
inferior olivary complex, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.848057
Pelvis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.159
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cytoplasm	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.763
SP in rostral midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02195
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.229
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.202
lateral parabrachial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.51814
kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.24804
CADOES1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.04088
Retroperitoneal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
fastigial nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.45354
Internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SK-UT-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.704
mesenchyme	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.432225
Adult Classical Hodgkin Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Adult Soft Tissue Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
CA3 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.71529
Ghost	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.024
spinal trigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.866072
Peroneal nerve paralysis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.358
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
hnf1a_16297991_hek293_embryonic_gof_mouse_gpl96_gds1499	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.826607
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
microtubule cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
ae1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.755
CA1 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.62538
GSE80098,GSE80366_0_v_4_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
HDQ-P1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964737
Hodgkin lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.859
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1397
VI, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.827337
Cellular myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.184
Parosteal osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
pontine raphe nucleus	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.863293
496100657_FWM_probable Alzheimer's disease_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	8.90459
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.1518
Childhood Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
Conventional osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.335
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041162
GSE226408_1_v_0_inpp4b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Clear cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.998
Crus I, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.02069
Leiomyosarcoma	DisGeNET Gene-Disease Associations	1.0	null
inner SZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15586
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.8876
Chromatin silencing complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.799
disease of cellular proliferation	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24312
GSE210101,GSE210114_7_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Primary T cells from cord blood	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	2.49652
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
Spindle cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.322
interleukin-12 receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.585
organism form	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Crus II, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.17475
MITF_01_25	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60406
VZ in thalamic region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.48705
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0711
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.365
lateral medullary reticular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.990173
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03271
Inflammatory myofibroblastic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.446
Epithelioid sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.659
GSE130396_0_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
tendon	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.15583
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9296
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.067856
PMC8567035-CTM2-11-e578-s001.xlsx-transcription_misregulation-RUNX1_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
synovial tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2569
bone cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Disease of cellular proliferation	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
medial vestibular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.08895
Extraosseous osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
GSE210101,GSE210114_11_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
Disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.583
22RV1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.10466
Synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.568
outer SZ in posteroinferior (ventral) parietal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.999835
GSE125219,GSE125221_4_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.778
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17569
placenta	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
hESC Derived CD184+ Endoderm Cultured Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.963197
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969542
Dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.632
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.595
imatinib_homo sapiens_gpl96_gds3044	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
outer CP in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00074
GSE162623_0_v_1_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054037
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3206
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29315
plant embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067865
Embryonic structure	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055422
CTCF_LNCaP clone FGC_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.5523
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89684
GSE184087_4_v_1_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
B-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.09
hsa-miR-4667-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
VIIIB, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.02016
Pericardium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.223
GSE201309_5_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059026
integument	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Mandibular ramus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.693
Placenta	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE242290_1_v_2_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054679
GSE202933_1_v_0_ugt2b28_human	RummaGEO Gene Perturbation Signatures	1.0	null
hsa-miR-431	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE206516,GSE206518_2_v_7_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02442
GSE239688_2_v_3_canagliflozin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11581
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.9527
medial ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.58084
hsa-miR-199b-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
PMC4407272-elife06857s001.xls-MITF_partners_CAF-MITF_partners_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
Malignant fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.866
peroneal nerve paralysis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.51501
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.543359
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.9138
FOXA1	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-501-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
GSE184087_0_v_3_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pancreas disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
hsa-miR-4700-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
EWSR1_02_167	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59537
GSE201309_1_v_8_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE184087_2_v_3_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
VIIIB, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.98137
Crus I, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.854479
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6623
Nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.047
layer IIIa of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.41441
GSE206516,GSE206518_2_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
caudal ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.19265
GSE159678_6_v_7_chloroquine_human	RummaGEO Drug Perturbation Signatures	1.0	null
20208059-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
plumule	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069786
GSE130396_8_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
20077526-TableS3	GeneSigDB Published Gene Signatures	1.0	null
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6013
rostral ventral respiratory cell group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03419
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4557
nephroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.244345
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31026
hsa-miR-3125	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Breast fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.21455
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.578
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.37469
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.406
imatinib_homo sapiens_gpl96_gds3048	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.12517
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.312
congenital mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.16906
adult stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.23961
NCIH2171	Achilles Cell Line Gene Essentiality Profiles	1.0	1.3342
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.438
VZ in midlateral extrastriate cortex (area 19)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.866078
outer SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.929611
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Perivascular epithelioid cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
NFYA	JASPAR Predicted Transcription Factor Targets	1.0	null
MALME-3M cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.718
protein complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Cell type cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
iPS-18 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.826092
SK-LMS-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.649
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044357
motor nucleus of trigeminal nerve, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.13148
Extraskeletal myxoid chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.624
decitabine_homo sapiens_gpl570_gse30985	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.596
CA3 field, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.2393
GSE171837_0_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Synovial sarcoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Crus II, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.09854
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	321.372
skeletal muscle cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
MEF2A	JASPAR Predicted Transcription Factor Targets	1.0	null
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.311
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.50196
raphe obscurus nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.843132
Multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.565
GSE210101,GSE210114_5_v_10_urod_human	RummaGEO Gene Perturbation Signatures	1.0	null
SK-MEL-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60146
JHOM1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.76965
urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.194548
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.970271
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	233.059
18537972-TableS3	GeneSigDB Published Gene Signatures	1.0	null
I-II	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.31848
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
Synovial Sarcoma, Biphasic	DisGeNET Gene-Disease Associations	1.0	null
GSE149035_1_v_5_hepacam_human	RummaGEO Gene Perturbation Signatures	1.0	null
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063218
hsa-miR-548c-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22802
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040996
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059161
GSE155972_0_v_1_setdb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Acute leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.218
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043505
Congenital fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.345
HS-SY-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.602
Kidney sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.11331
GSE210101,GSE210114_2_v_10_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNUC1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.39417
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052102
GSE242290_1_v_6_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
SG in inferolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.44195
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE201309_1_v_6_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
indusium griseum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.826023
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.994
DKKL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93193
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051209
V, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.1195
dorsal motor nucleus of the vagus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.99712
abducens nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.56298
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.398
Notochordal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.24
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60179
Epithelioid inflammatory myofibroblastic sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
Cytotoxic T-lymphocyte cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
outer SZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.00315
microtubule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15726
Alveolar rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.832
GSE212330_1_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
periaqueductal gray substance, ventral portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.51539
Adult cystic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.77
Cardiovascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.976
IX, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.06031
ventral medial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.36331
GSE238116_1_v_0_egr1_human	RummaGEO Gene Perturbation Signatures	1.0	null
VIIIA, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.37951
motor nucleus of trigeminal nerve, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.08199
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041324
macromolecular complex	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Childhood Soft Tissue Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.052159
GSE210101,GSE210114_0_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.583
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.644
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Palatine uvula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.588
supraoptic nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.867961
Mediastinal mesenchymal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.218
Synovial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.48
Hepatobiliary disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.371
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9075
A253	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
Central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.25
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17569
Mixed cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
Malignant triton tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.364
lateral nucleus of pulvinar	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.932157
Desmoplastic Small Round Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2096
ZBED2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2344
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969542
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2632
Heart cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.924348
Melanotic neurilemmoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.228
Neuroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.346
Poorly differentiated chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.16
16574658-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
hsa-miR-1271	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Hyaline inclusion	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.057
laterorostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.14283
Male reproductive organ cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
hsa-miR-4697-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Acute myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.249
RFX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3312
PMC10789969-crt-2023-577-Supplementary-Table-S2.pdf-26-SMAD3_SMAD3	Rummagene Transcription Factor Associations 2026	1.0	null
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.05
Cancer	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.885501
GSE130396_7_v_6_braf_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.047158
Mandibular condyle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.572
Synovial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.282
Chronic myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
GSE74251_2_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Central Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Juxtacortical chondroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.287
Head and neck cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.023
BCOR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.545
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.981089
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.427
Musculoskeletal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.366
rostral migratory stream	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.59992
Acute lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
Male reproductive system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
hsa-miR-548v	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
gamma-delta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.547
childhood kidney neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.04588
medial superior olive	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09609
anterior orbital gyrus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.86492
Bone osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.329
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
Cellular neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.204
NIPBL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70421
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.395
caudal division of IPC (area 39)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.07211
Perivascular tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.98
Liver carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
GSE238116_3_v_2_egr1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
fibroblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059834
59m	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.37
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10372
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.4113
CTCF	ENCODE Transcription Factor Targets	1.0	null
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.527928
Gastric leiomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.257
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5027
CA4 field, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.59311
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.970271
Synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.511
Desmoplastic small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.875
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67007
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.451
Rhabdoid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.499
blastema	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.820666
sarcoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.159
polysensory temporal cortex (area 22p)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35223
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.747
Bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.724
igr37	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.015
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.933454
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054698
premotor cortex (area 6)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.57301
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.042521
Sarcomatoid carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.776
GSE224294_3_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
deep layers of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.37822
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11581
lateral mammillary nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.895122
PMC10952034-mmc2.xlsx-Table_S1-Table_S1_Pooled_shRNA_screen_analysis_to_identify_genes_selectively_required_for_the_proliferation_of_MYC_overexpressing_cells_Related_to_Figure_1_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
Retroperitoneal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
Monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.816
Integrin alpha1-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.517
GSE240439_1_v_2_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Superior vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.761
IV, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.926898
embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.248905
Childhood fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.343
BCAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27404
TMEM190	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.31277
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.71906
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.225622
Meningioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.546
caudal subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.05982
CA2 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.19119
WDR73	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26411
Ichthyosis	DisGeNET Gene-Disease Associations	1.0	null
Renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.428
Skin	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE210101,GSE210114_6_v_10_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
klf4_17017123_rko_gof_human_gpl96_gds1942	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.797491
Childhood Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.572
Adult Hodgkin Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.398
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
excretory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052382
Spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.419
area postrema	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.57645
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.870799
GSE207514,GSE207515_0_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.395
VI, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.18479
143B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.24492
Hepatobiliary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
Sarcoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
16397242-Table1	GeneSigDB Published Gene Signatures	1.0	null
Peripheral osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
outer CP in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.41191
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964737
hsa-miR-1282	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.553
Nephroblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
skin	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Parapsoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.074
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.1294
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60146
Osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.57
hypoglossal nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.902927
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hsa-miR-4253	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.474
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.47979
VIIB, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.49483
Gastrointestinal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
hypoglossal nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.12712
outer SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.07244
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	211.357
SPI1	ENCODE Transcription Factor Targets	1.0	null
Autonomic nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.045
ZNF324	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9196
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.970271
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.11581
NUGC-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.73
Spindle cell rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Adult Desmoplastic Small Round Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
Angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.631
Spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.681
Childhood Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.094
Small cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.944
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.308
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
FOXD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.0
Recurrent Tumor	DisGeNET Gene-Phenotype Associations	1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_3_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.885501
seed	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064937
GSE206502_2_v_1_igf2bp1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
PMC9647903-13100_2022_279_MOESM9_ESM.xls-Human_KRAB-ZFPs-Information_of_all_human_KRAB-ZFP_genes_ZKSCAN7	Rummagene Transcription Factor Associations 2026	1.0	null
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043959
High grade glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.106
germ layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.32132
ZBTB37	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.04218
hsa-miR-4641	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE218378_1_v_0_pbx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
cartilage	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
lateral ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.27764
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00126
SU8686	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.02543
Peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.472
GSE152699,GSE152723_3_v_2_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE145639_1_v_2_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01457
GSE135030_3_v_1_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
gracile nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.943144
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35251
GSE199543,GSE239447_0_v_4_ezh2_human	RummaGEO Gene Perturbation Signatures	1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3498
Adult Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
CA1 field, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.8185
outer SZ in superolateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.25697
IGROV1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.98515
PMC11979751-table_s2_markers_elad055.xlsx-Melanoma_state_immune_markers-AP1_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
Sarcomatoid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.522
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6973
PMC9013128-NIHMS1795992-supplement-4.xlsx-501mel_ARID2_KO_Upregulated-Gene__name_ARID2	Rummagene Transcription Factor Associations 2026	1.0	null
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24122
Colorectal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
Musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.798
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.438
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.549
Lymphoid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.285
Hodgkin Disease	DisGeNET Gene-Disease Associations	1.0	null
1HAEo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.813
Kidney cortex disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.078
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8542
hsa-miR-502-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.49
Mesenchymal chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.115
Spindle cell synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.687
Renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.423
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.824
cytoplasmic part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0711
Muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.146
GSE145790_0_v_1_bruceantin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Alveolar soft part sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.255
GSE135030_8_v_2_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Pericardium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.03
Childhood Hodgkin Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.01
layer II of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.947272
GSE212330_1_v_0_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.22435
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
hsa-miR-199a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.4914
Dedifferentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.804
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.30748
GSE184087_2_v_1_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05672
SP in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.835511
cancer	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.476
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.97
cuneate nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.836566
GSE96777,GSE96778_1_v_0_zbtb4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.025
bone	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
GSE149035_2_v_5_hepacam_human	RummaGEO Gene Perturbation Signatures	1.0	null
skeletal system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.425
WEHI-3B cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.559
Epithelioid malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.061
Metastatic Prostate Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.053
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Childhood Desmoplastic Small Round Cell Tumor	DisGeNET Gene-Disease Associations	1.0	null
Malignant Peripheral Nerve Sheath Tumor	DisGeNET Gene-Disease Associations	1.0	null
B-cell acute lymphoblastic leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
496100547_HIP_no dementia_no TBI_82_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.70148
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.363
GSE239688_4_v_3_canagliflozin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE239688_4_v_0_canagliflozin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cellular congenital mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.64038
leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.070737
hsa-miR-2467-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.158
Hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.562
Male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.221
TC-32 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.569
layer III of rostral entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.53816
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.29899
Ameloblastoma	DisGeNET Gene-Disease Associations	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.822
Glioblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
Ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
Flexor tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
Myc-CaP cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.853
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.891
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8533
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.272997
peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.180084
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051367
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838253
POLR2A_H54_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SG in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.895348
VIIB, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.45514
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.620226
IGR39	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.03954
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.281423
GSE135030_8_v_5_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
TRAMP-C1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.509
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71829
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8064
Childhood Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
GSE184087_0_v_1_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE160304,GSE163392_2_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.516
Iliopsoas muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.862
upper limb region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.40437
Monoclonal Gammopathy Of Undetermined Significance	DisGeNET Gene-Disease Associations	1.0	null
Cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Integral component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.136
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2582
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
well-differentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
seedling	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067865
Heart sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.465
496100671_HIP_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.58758
Bone marrow disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.553
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24122
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.059895
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Leukocyte disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.491
GSE160304,GSE163392_4_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
nod2_21335489_hek293_lof_human_gpl570_gds4416	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.152506
SG in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.09072
MGE-Lateral region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.39271
skeletal muscle cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
layer III of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.921688
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.663
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051486
myoblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6461
hsa-miR-939	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Testicular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
COLO704	Achilles Cell Line Gene Essentiality Profiles	1.0	1.27412
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.504
GSE135030_3_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.481
GSE135030_3_v_10_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
condensed chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.191456
Liver cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.371
GSE178292_0_v_3_melphalan_human	RummaGEO Drug Perturbation Signatures	1.0	null
Mesenchymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.095
VIIB, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.853153
ae3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.343
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35251
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Liposarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.505
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833067
GSE169205_3_v_5_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
lateral intermediate part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.00801
Neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
ut1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.515
Reproductive organ cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
HCC1187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83443
JUN	JASPAR Predicted Transcription Factor Targets	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.568775
G-402 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.744
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
VI, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.29102
mammillary body, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.831146
cytoskeletal part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.297
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE171837_3_v_1_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-3916	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Hepatocellular carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
hsa-miR-527	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Mediastinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.286
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2569
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.322
CA4 field, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.55263
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Embryonal rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
V	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.94182
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24122
gonad	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE206516,GSE206518_1_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hsa-miR-3678-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Vacuolar transporter chaperone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.711
GSE130396_7_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HCC2218	Achilles Cell Line Gene Essentiality Profiles	1.0	1.04446
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.286381
GSE242290_1_v_11_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.599
Childhood malignant schwannoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.45
SK-MEL-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00477
T-lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.902
hsa-miR-128	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
hsa-miR-1208	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Metastasis From Malignant Tumor Of Prostate	DisGeNET Gene-Disease Associations	1.0	null
GSE145639_1_v_6_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Bone angioendothelial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
Esophageal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
Erythroleukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE148657_3_v_0_cd44_human	RummaGEO Gene Perturbation Signatures	1.0	null
GATA2	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-4257	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE235701,GSE261434_2_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cytoplasmic microtubule	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE98898_7_v_1_hoxa1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Malignant Tumor Of Colon	DisGeNET Gene-Disease Associations	1.0	null
Ewing sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.938
transcriptional repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.275936
GSE169205_3_v_8_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
Glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.914
esBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.606
GSE235701,GSE261434_0_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.443
COR-L311	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.969542
GSE169356_0_v_1_ivermectin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE206516,GSE206518_6_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.426
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.667
GSE159678_4_v_7_chloroquine_human	RummaGEO Drug Perturbation Signatures	1.0	null
tendon sheath	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE221327_5_v_0_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.502
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.287803
Crus II, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.936131
GSE201309_1_v_0_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SWI/SNF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.551
Mel888 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.747
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1892
Aggressive Cancer	DisGeNET Gene-Phenotype Associations	1.0	null
plicamycin_homo sapiens_gpl570_gse25127	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MHC class I peptide loading complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.179
SK-MEL-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.688
Skin cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
Synovium neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.157
GSE115364_0_v_1_idh3a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
rt1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.6799
EL-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.019
H9 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.34064
Pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
outer CP in lateral temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.16598
outer CP in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10551
IV	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.975762
Navicular bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.043585
Testicular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.205
GSE210101,GSE210114_2_v_9_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CTCF_pancreas_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
outer CP in frontal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.905451
internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
outer CP in midlateral extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.45713
Skeletal muscle cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
VCAP	Achilles Cell Line Gene Essentiality Profiles	1.0	1.80382
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.01457
kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.279724
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
Connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.832
ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081348
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.885501
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.626
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.543
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.625
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45045
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041086
central medullary reticular group, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.931319
GRHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7561
outer CP in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.910108
SREBF2	JASPAR Predicted Transcription Factor Targets	1.0	null
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9089
Transcriptional misregulation in cancer	KEGG Pathways 2026	1.0	null
head and face region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.86189
zona incerta, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.39393
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.85603
Psammomatous meningioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.736
Perineurium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.53
GSE135400_1_v_0_kdm1b_human	RummaGEO Gene Perturbation Signatures	1.0	null
hypocotyl	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069198
SOX12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8339
synovial sarcoma cell	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
B-lymphoblastic leukemia/lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.112
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.352291
globose nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.17662
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050369
Leukemia	DisGeNET Gene-Disease Associations	1.0	null
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.863456
hsa-miR-4668-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
external granular (germinal) layer of lower rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.01519
VI	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.06428
emboliform nucleus, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.40799
42-MG-BA	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
shoot	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.062432
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.412
Endodermal sinus tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.404
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
Hodgkin's lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
Malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.197
Organism form	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
superficial layers of caudal presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.71387
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.858316
GSE201309_1_v_2_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.168
skeletal muscle	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
parabigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.19908
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.422
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.263
GSE210101,GSE210114_0_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Hepatic artery	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.684
GSE242199_2_v_5_ntrk2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Dysgerminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4478
X	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.889569
Kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.625
layer VI of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04851
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
BEX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88849
Smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.093
urinary system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.241746
Groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.747
CORL23	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.10384
VIIB, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.12286
biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.1312
fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.74174
Neurilemmoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
Multiple Chronic Conditions	DisGeNET Gene-Disease Associations	1.0	null
Bladder disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.004
Embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.085
Prostate cancer	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.571
Seminoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.087
connective tissue	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
IX, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.42223
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.981198
Dysplastic Nevus	DisGeNET Gene-Disease Associations	1.0	null
HS683	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.12307
GSE173282_1_v_0_marchf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.624
colo800	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.02
PMC11979751-table_s2_markers_elad055.xlsx-Melanoma_state_markers-AP1_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
GSE169205_3_v_2_sirt5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE112365_0_v_1_sirt1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
KU-812 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
mammillary body, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.831745
VZ in septal region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.93786
Tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.485
OV56	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.838253
testis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3235
VIIIA, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.00659
11861364-Table2a	GeneSigDB Published Gene Signatures	1.0	null
Steroid Sulfatase Deficiency Disease	DisGeNET Gene-Disease Associations	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.833067
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.43422
Primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.022
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
VZ in caudal hippocampal proper	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-3.41306
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.471
Tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.542
GSE236486_1_v_0_arnt_human	RummaGEO Gene Perturbation Signatures	1.0	null
alpha-beta T cell receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.816
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8671
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.206766
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
choroid plexus of the fourth ventricle	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.95439
Fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.864
GSE184399_0_v_3_cnot1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Childhood kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.486
LGE-VZ border region	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.36832
Adult Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
hdlm2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.273
Carcinoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CBX3_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE239688_4_v_1_canagliflozin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_2_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
CBX3	ENCODE Transcription Factor Targets	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.362239
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0711
Melorheostosis, Isolated	DisGeNET Gene-Disease Associations	1.0	null
OCIAML5	Achilles Cell Line Gene Essentiality Profiles	1.0	2.49477
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051547
Nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9764
U-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5336
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
dorsal lateral geniculate nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.941976
monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.81374
Spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.788
rostral division of OFCi (area 11)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.856942
dorsal cochlear nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07083
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
outer CP in ventromedial extrastriate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35975
Biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.745
KP2	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.48226
GSE239688_2_v_1_canagliflozin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.17254
Pleomorphic liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.527
Nasopharyngeal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
SG in posterior frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.877216
Myxofibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.35
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.932686
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7475
NCI-H650	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.363
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40932
Malignant astrocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.088
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.309
cytoskeleton	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045384
KLF5	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-574-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
SG in primary somatosensory cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.946194
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.604
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8262
15489324-TableS2	GeneSigDB Published Gene Signatures	1.0	null
NCI-H650	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.0246
vertebrate muscular system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.29
neural plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.153174
Integumentary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.076
Mixed germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
Blood cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5675
496100586_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.52386
Classical Hodgkin'S Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045805
Psammoma body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.736
hsa-miR-3650	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.529
Congenital mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.48003
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.44
Myosin X complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.502
GSE201309_1_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6097
Cytotoxic T-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.722
GSE80098,GSE80366_0_v_5_progesterone_human	RummaGEO Drug Perturbation Signatures	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.366
Sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.597
496100303_HIP_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.96853
Thyroid Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Bone sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.755
lower limb region of M1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.2103
IV, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.20169
F36P	Achilles Cell Line Gene Essentiality Profiles	1.0	1.35124
VIIAf	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.41731
anterior hypothalamic area, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.979994
VIIIA, left, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.1062
CALU1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.52103
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041491
IX, right, paravermis	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.79682
paraventricular nucleus of the hypothalamus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.879544
CA2 field, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.6994
cingulum bundle, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.35122
DGCR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51886
GSE210101,GSE210114_6_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Multiple Myeloma	DisGeNET Gene-Disease Associations	1.0	null
GSE160304,GSE163392_7_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
Myeloid neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.542
IZ in midcingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09717
mesenchymal stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.528323
PMC10243915-uxad037_suppl_supplementary_table_s1b-table_s3b.pdf-402-TERF1_TERF1	Rummagene Transcription Factor Associations 2026	1.0	null
Rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.951
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6532
hsa-miR-586	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Connective tissue benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.382
Synovial Sarcoma Non-Metastatic	DisGeNET Gene-Disease Associations	1.0	null
Lung sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.921
hsa-miR-4263	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KP4	Achilles Cell Line Gene Essentiality Profiles	1.0	1.03675
Adamantinoma	DisGeNET Gene-Disease Associations	1.0	null
Disease of cellular proliferation	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.54
Cellular schwannoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.264
B-lymphoblastoid cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.652
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05313
muscular system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
496100659_PCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.07007
GSE171837_3_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.382
Intrinsic component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.136
GSE240439_1_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
III, left, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-1.85765
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.34
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.293
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Adult fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
GSE207514,GSE207515_1_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.473
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.574217
Sarcomatoid mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
synovium	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
midbrain reticular formation, left	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.832992
GSE237053_1_v_0_comt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Car cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.605
synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.12517
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	179.171
Urinary bladder cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.025
graft-versus-host disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.015
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5583
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Cardiac tamponade	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.929
POLR2A	ENCODE Transcription Factor Targets	1.0	null
Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
Mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.894
Chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.199
urinary tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.235748
facial motor nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	0.947901
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.383
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.91268
GSE169356_0_v_3_ivermectin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.972613
hsa-miR-3175	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Prostate carcinoma	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.718
Leukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Crus II, right, lateral hemisphere	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	-1.0	-0.876282
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
emboliform nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.51534
KNS60	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.1879
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.594
fastigial nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	2.00663
Malignant spindle cell melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
medial habenular nucleus, right	Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles	1.0	1.04666
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041214
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039984
glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.550901