association	dataset	threshold value	standardized value
extrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.178299
Childhood osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.095
Epithelioid cell synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
PMC5352183-oncotarget-08-624-s009.xlsx-Table_S20-1_indicates_that_the_gene_is_both_a_TP53-MW_and_a_TP53-MSN_gene_in_the_correponding_cancer_and_0_indicates_not_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
frequently	GeneRIF Biological Term Annotations	1.0	null
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.75905
hsa-miR-3610	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
HPAF-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.582
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M9-01A-23R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Smooth muscle tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.162
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.044
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40655
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-7353-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.322
Renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.239
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.284
hs431	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.149
clinical	GeneRIF Biological Term Annotations	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953347
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
catenin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.337373
Retroperitoneal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3569
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0784
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
Desmoid tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.067
Tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.488
NR1I3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3563
GSE102870_11_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE238116_3_v_2_egr1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187741
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
decitabine_homo sapiens_gpl570_gse30985	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
cutaneous t cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.184424
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.2883
18316601-Table1	GeneSigDB Published Gene Signatures	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.124
Rectum adenocarcinoma_READ_TCGA-EI-6513-01A-21R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Histiocytoid hemangioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182695
KLF10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	117.947
Desmoplastic small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.538
POLR2A	ENCODE Transcription Factor Targets	1.0	null
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05179
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.850845
GSE158458_2_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE191015_1_v_3_gsdmb_human	RummaGEO Gene Perturbation Signatures	-1.0	null
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.304279
heparin_homo sapiens_gpl570_gse12710	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
16293578-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.456
malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.448817
PMC12178384-mmc5.xlsx-Sheet1-Supp_Table_3_Differential_expression_analysis_of_CIC-rearranged_sarcomas_vs_Ewing_sarcomas_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.00541
Liver hepatocellular carcinoma_LIHC_TCGA-BW-A5NQ-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.269
ALPL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41163
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107977
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
Myeloid neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.274
Heart sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.346
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0168
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.0996
GSE123943_2_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
JF-93-EL43_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.527285
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	290.129
Urinary bladder	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.624
plicamycin_homo sapiens_gpl570_gse25127	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	61.1553
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A3CC-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hemangiopericytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.964
High grade glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.014
BACH1	ChEA Transcription Factor Targets	1.0	null
Synovial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.233
Liver hepatocellular carcinoma_LIHC_TCGA-BC-4073-01B-02R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.276
GSE216274,GSE216292_4_v_2_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HOXA10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.1684
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3834
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.47
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.336704
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9338
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064864
KLF4-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
xage1	GeneRIF Biological Term Annotations	1.0	null
Angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.411
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392686
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.692
PMC12178384-mmc4.xlsx-Sheet1-Supp_Table_2_Differential_expression_analysis_of_CIC-rearranged_sarcomas_vs_BCOR-rearranged_sarcomas_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
GSE171837_1_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
HEC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-4708-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.7215
GSE145639_1_v_2_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hsa-miR-527	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.02
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.484
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3273
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04398
PHF8-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Adult fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.456
multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
lymphocytes	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-1271	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.264
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.23503
Epithelioid malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.6744
Brain Lower Grade Glioma_LGG_TCGA-WY-A85C-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SMRT-27268052-CHIP-SEQ-BCELLS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF677	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1879
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A217-01A-11R-A155-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622183
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929043
non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
BACH1-22875853-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3AB-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
Juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.059
ssx3	GeneRIF Biological Term Annotations	1.0	null
GSE193258,GSE193259_9_v_0_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.234
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20823
Bladder	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.156
monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.883111
synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.11
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A6B5-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1382
253J	CCLE Cell Line Gene Mutation Profiles	1.0	null
GSE48812_9_v_5_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
lines	GeneRIF Biological Term Annotations	1.0	null
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67951
hsa-let-7e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Childhood fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.429
earlystage	GeneRIF Biological Term Annotations	1.0	null
Pseudosarcomatous fibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.12
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A3XF-01A-31R-A239-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE178714_5_v_2_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.02068
Intrahepatic Cholangiocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
SOX13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0521
thyroid	GTEx Tissue Gene Expression Profiles	1.0	1.58633
PMC7576810-41419_2020_3099_MOESM9_ESM.xlsx-MS_analysis_EVI1-WT_vs_EVI1-S43-Unnamed_0_MECOM	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HLF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4627
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.700262
ZBED1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.724
nucleus	GO Cellular Component Annotations 2023	1.0	null
Leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.173
SREBF2	JASPAR Predicted Transcription Factor Targets	1.0	null
only	GeneRIF Biological Term Annotations	1.0	null
Fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.942
ESC/E(Z) complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.598
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09637
hsa-miR-4797-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.136254
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148347
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.361
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.143687
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3165
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.4
Lung squamous cell carcinoma_LUSC_TCGA-56-8307-01A-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7472-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8053
NCI-H1417	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.173
Sarcomatoid renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.737
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8941
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83551
bile duct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.152182
NCIH211	CCLE Cell Line Gene Mutation Profiles	1.0	null
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.36161
myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355235
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843118
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829227
hsa-miR-98	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GSE212330_1_v_0_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZF-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Central Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.98827
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.193
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.336
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
gage	GeneRIF Biological Term Annotations	1.0	null
MTF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2732
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.803
reticulosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.252422
GSE210101,GSE210114_4_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048026
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7289-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RT-A6YA-01A-12R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.586
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843118
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.2228
GSE97352_1_v_2_dasatinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.295132
Sarcomatoid mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.414
Brain Lower Grade Glioma_LGG_TCGA-S9-A6UB-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Seminoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3722
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A80P-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
E2F1-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70355
Monoclonal Gammopathy Of Undetermined Significance	DisGeNET Gene-Disease Associations	1.0	null
lipofibromatosis-like neural tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.345
GSE224004,GSE224005_0_v_1_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
ssx4	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-134	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.835
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
NCI-H211	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-8191-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310059
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5279
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.373868
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A6R0-01A-12R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE153443_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-7863-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DB-34-QA60_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.244613
Sarcomatoid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A7M6-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68C-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE129241_1_v_0_valproic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
u266	HPA Cell Line Gene Expression Profiles	1.0	0.834519
Pontocerebellar hypoplasia type 13	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
FOXF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8266
Spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.818
HLE	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Sarcoma_SARC_TCGA-DX-A8BH-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.359
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0586
ae3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.577
TCF21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8725
Peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.997
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TC-01A-21R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578016
Bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.693
Adult Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.368
GSE89154_1_v_2_proscillaridin_human	RummaGEO Drug Perturbation Signatures	1.0	null
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43727
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.462
PMC12178384-mmc6.xlsx-Sheet1-Supp_Table_4_Differential_expression_analysis_of_CIC-rearranged_sarcomas_vs_CIC-rearranged-like_sarcomas_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02538
hsa-miR-183	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Brain Lower Grade Glioma_LGG_TCGA-P5-A5EV-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE213410_0_v_3_calcitriol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.705583
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4602
Alveolar soft part sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.607
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.295
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.998236
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2757
GATA3-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041391
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Rhabdomyosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.968
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.38253
rpmi-8226 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
Lung squamous cell carcinoma_LUSC_TCGA-22-1016-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087682
Skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.084
synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.47662
ZNF211	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3955
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2353
Malignant spindle cell melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.101
GSE195663_7_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.774114
MSTO-211H	COSMIC Cell Line Gene Mutation Profiles	1.0	null
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054934
Prostate adenocarcinoma_PRAD_TCGA-KK-A7AQ-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041478
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25138
GSE110268_0_v_3_foxd1_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE77108_0_v_9_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Lung adenocarcinoma_LUAD_TCGA-55-1596-01A-01R-0946-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE212330_1_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
PcG protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.708
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905196
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.388
GSE48812_2_v_5_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6371
Gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.221
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.625
Juxtacortical chondroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
Lung adenocarcinoma_LUAD_TCGA-05-4382-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-R8-A6YH-01A-21R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lassa Fever Virus_4hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.67909
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040751
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Neurilemmoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.43
Adamantinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.141
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.015
Ewing's sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.939
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.965496
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-5624-01A-01R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
Myxofibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.348
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6195
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23655
496100644_HIP_probable Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.3237
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03643
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
Spindle cell synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.753
hsa-miR-199b-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.632343
cholangiocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.606112
hsa-miR-4439	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.546136
GSE48812_9_v_10_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hsa-miR-501-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.144648
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.237
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048777
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
PMC9013128-NIHMS1795992-supplement-4.xlsx-501mel_ARID2_KO_Upregulated-Gene__name_ARID2	Rummagene Transcription Factor Associations 2026	1.0	null
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.727276
HCC202	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.911733
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.162
sucrase-isomaltase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.919
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051739
Peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.616
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137633
Ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
Gastrointestinal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.409
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70D-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
each	GeneRIF Biological Term Annotations	1.0	null
Central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
Small cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.715
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
Lung adenocarcinoma_LUAD_TCGA-MN-A4N4-01A-12R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0369
Extraskeletal myxoid chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.481
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
BB-62-SZ35_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.98109
Superior vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.621
breast	GTEx Tissue Gene Expression Profiles	1.0	1.2652
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	193.136
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40357
MCF10F	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.39806
sequences	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-2467-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A1Q0-01A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3118	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081973
hsa-miR-4731-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4688-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A61B-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE210682_2_v_3_methadone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
brain	GeneRIF Biological Term Annotations	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03908
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.184424
Malignant fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.875
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1089
Bladder Urothelial Carcinoma_BLCA_TCGA-MV-A51V-01A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ssx1	GeneRIF Biological Term Annotations	1.0	null
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067612
hsa-let-7i	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
plasma cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161523
bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.338341
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	100.971
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23492
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
Ewing's sarcoma family tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.919
18172295-SuppTable4	GeneSigDB Published Gene Signatures	1.0	null
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25138
BL1685 (BUB3)	NURSA Protein Complexes	1.0	null
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.455284
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.525
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.47
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_3_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-let-7b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Multiple Myeloma	DisGeNET Gene-Disease Associations	1.0	null
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063212
biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.870825
ZNF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.5378
Liver hepatocellular carcinoma_LIHC_TCGA-CC-5264-01A-01R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8789
GSE143406_1_v_0_carfilzomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
Cellular schwannoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
Poorly differentiated chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
Hemangiopericytic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.963
dactinomycin_homo sapiens_gpl7172_gse12459	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
MAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8342
hsa-miR-199a-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.632343
KHOS-240S cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
A-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
PMC2768459-6605275x5.xls-Hoja1-Supplementary_Table_S2_Differentially_expressed_genes_within_the_ESR1-negative_BRCA1_tumors_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
Glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
PMC9050671-41598_2022_10725_MOESM1_ESM.docx-4-NFE2L1_NFE2L1	Rummagene Transcription Factor Associations 2026	1.0	null
circulating	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4306	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
GSE216988,GSE216989_0_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Glomus tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
Myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.063
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
Fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.786
Kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.499
Utricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.568
ZNF492	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.43989
Pulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060714
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.096654
derived	GeneRIF Biological Term Annotations	1.0	null
multiple	GeneRIF Biological Term Annotations	1.0	null
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.127952
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A20F-06A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0515
hsa-let-7c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
PRC1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.523
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LA-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.00414
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
GSE224004,GSE224005_0_v_8_chd4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RT-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Rhabdoid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.798
SK-MEL-37 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.506
Embryonic germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.312
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
BCL6-25482012-CML-JURL-MK1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Mesenchymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.356
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.361
Perivascular tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.842
Childhood Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171852
Musculoskeletal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.615
Parosteal osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.107
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.707221
hsa-miR-3175	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.210925
Embryonal rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.231
Childhood liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190786
Nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.265
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-4696-01A-01R-1277-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
npBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.967
hsa-miR-4697-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Spindle cell rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.269
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.874
esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159838
hsa-miR-4641	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.324458
PMC5949367-Table_1.DOCX-0-RARA_RARA	Rummagene Transcription Factor Associations 2026	1.0	null
Bone sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.679
Infantile myofibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
SP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	112.921
cd4	GeneRIF Biological Term Annotations	1.0	null
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.400826
Familial combined hyperlipidaemia_Blood monocyte_GSE11393	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.93589
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03161
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49317
Neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.55
DD-75-HY40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	9.24846
Mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.81
Kidney Chromophobe_KICH_TCGA-KO-8404-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.07
GSE210101,GSE210114_2_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-VN-A88R-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-SI-A71Q-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4016
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.145381
biliary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141126
hsa-miR-3916	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.718
Bone marrow disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.315
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936744
Synovial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.004
Liposarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05977
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92594
Pheochromocytoma and Paraganglioma_PCPG_TCGA-RW-A68D-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-7302-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
pcg protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.393549
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2464
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8974
Clear cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.849
Sarcoma with BCOR genetic alterations	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.513
PATZ1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	179.458
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4737-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
well-differentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.723
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.289027
RAF1_overexpression_220_GSE42964	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.59875
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.286736
Dedifferentiated chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.002
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
Synovium neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.243
Pleuropulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
GSE205163,GSE205164_3_v_4_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Malignant mesenchymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
Huntington's Disease_Lymphocyte_GSE8762	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.27107
hsa-miR-3678-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Lung squamous cell carcinoma_LUSC_TCGA-33-4582-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
HS578T	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.24292
Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235964
mature b-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135184
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1575
PRDM9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	164.75
Nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.19
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
Ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.48
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046102
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051195
Brain Lower Grade Glioma_LGG_TCGA-HT-7606-01A-11R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35743
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29341
hsa-miR-4458	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.15363
GSE171837_3_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
existence	GeneRIF Biological Term Annotations	1.0	null
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
hsa-miR-4700-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.855
urinary bladder	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A10Y-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.723
hsa-miR-574-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8583
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04118
Dedifferentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.901
PMC6520398-41467_2019_10148_MOESM11_ESM.xls-FigS1a-TP53_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041275
Bladder Urothelial Carcinoma_BLCA_TCGA-E5-A4TZ-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A49A-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE48812_2_v_10_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Peripheral osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.024
hsa-miR-586	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49013
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046224
plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258917
GSE244710_1_v_2_srsf1_human	RummaGEO Gene Perturbation Signatures	1.0	null
11965276-Table1	GeneSigDB Published Gene Signatures	1.0	null
ssx2	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-4779	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1931
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1093
MDAMB415	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.938535
GSE156923_2_v_1_rbmx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7049
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889015
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6059
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.609332
hsa-miR-3125	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.049
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.395
FOXG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9355
ARTN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01491
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
JPH2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.26684
Endometrial stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.293
extrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16298
hsa-miR-502-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.677
NBSUSSR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RF-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE102870_7_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.889
Endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.163
RD-ES cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.816
Lung squamous cell carcinoma_LUSC_TCGA-77-6845-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung adenocarcinoma_LUAD_TCGA-69-8255-01A-11R-2287-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.47803
Childhood kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.784
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039504
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6116
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
GSE145639_1_v_6_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	112.05
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A193-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BCOR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.777
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4278
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.732
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
DE-62-FI29_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.286029
SW-872 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
myeloma	GeneRIF Biological Term Annotations	1.0	null
GSE123943_4_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZR75B	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.817571
ZNF438	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21356
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10118
Epithelioid inflammatory myofibroblastic sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.269
CEBPB	ENCODE Transcription Factor Targets	1.0	null
urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
Retroperitoneal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.01
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
Peritoneal mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.547
MYC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23655
NFIL3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2384
multiple myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
Brain Lower Grade Glioma_LGG_TCGA-QH-A6XA-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NFYA	JASPAR Predicted Transcription Factor Targets	1.0	null
Muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.195
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE160304,GSE163392_7_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC9647903-13100_2022_279_MOESM9_ESM.xls-Human_KRAB-ZFPs-Information_of_all_human_KRAB-ZFP_genes_ZKSCAN7	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE133516_5_v_2_kat7_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sarcoma_SARC_TCGA-DX-A3M1-01A-11R-A22K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041729
Liposarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.395
Adrenocortical carcinoma_ACC_TCGA-OR-A5K2-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2857-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-let-7f	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Coffin-Siris syndrome 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30517
NFYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.353
bladder	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TE-671 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.567
Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A42P-01A-11R-A23W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4801	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094049
FOXK2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4618
Spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.309
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4741
FOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1618
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.609735
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.169
lung	GeneRIF Biological Term Annotations	1.0	null
Monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.595
Endometrial stromal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.316
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
UACC893	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.78038
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.766
Pelvis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.187
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4878
nucleus	GO Cellular Component Annotations 2025	1.0	null
hsa-let-7d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15172
Brain Lower Grade Glioma_LGG_TCGA-P5-A781-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5297
SOX12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3844
hsa-miR-1282	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
ZNF257	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.1297
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.049
esBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.064
CEBPB_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.05477
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05132
Dhori Virus_12Hour_20090954_GSE17400	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.38834
Pleomorphic lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.173
myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.165014
hsa-let-7g	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973601
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.333
Prostate adenocarcinoma_PRAD_TCGA-VN-A88M-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081419
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.095842
multiple myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.188596
Pleomorphic rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
Urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.482
SAOS-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.963
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07376
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905196
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990116
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
Mediastinal mesenchymal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.304
Lassa Fever Virus_24hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.43886
GSE48812_9_v_1_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.25
Chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.575
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990116
LAN-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.71
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	116.175
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.826942
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
hsa-miR-3129-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.436802
Muscle benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278603
GSE70935_3_v_5_cyfip1_human	RummaGEO Gene Perturbation Signatures	1.0	null
nBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.059
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.677
lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
Congenital fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.431
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.25798
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5445
Lung squamous cell carcinoma_LUSC_TCGA-56-8625-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060776
GSE207728,GSE207808_2_v_1_c646_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE102870_7_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054129
BLM cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.054
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.373
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
sezary's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.542767
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HS-SY-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.403
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MC-06A-12R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE133516_0_v_2_kat7_human	RummaGEO Gene Perturbation Signatures	1.0	null
parapsoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.950769
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.857
GSE205163,GSE205164_3_v_6_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.249
Meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.162
Inflammatory myofibroblastic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.619
Prostate adenocarcinoma_PRAD_TCGA-EJ-5494-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Notochordal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
GSE205163,GSE205164_3_v_7_znf808_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.432
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-431	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3J3-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CC-62-XM29_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.390887
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.309
Neuroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.383
GSE160304,GSE163392_2_v_3_zswim8_human	RummaGEO Gene Perturbation Signatures	1.0	null
Esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.822
SOX10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5479
Alveolar rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.902
SWI/SNF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.352
Groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.777
Glucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.794
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.33998
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22182
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.376
KLF5	JASPAR Predicted Transcription Factor Targets	1.0	null
u-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.527928
GSE236486_1_v_0_arnt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE48812_2_v_1_sulforaphane_human	RummaGEO Drug Perturbation Signatures	-1.0	null
u26684	HPA Cell Line Gene Expression Profiles	1.0	1.50349
Bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
Cellular myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.751
nuclear body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.192423
18172295-SuppTable1	GeneSigDB Published Gene Signatures	1.0	null
GSE77108_0_v_7_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.431
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.496
Synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.538
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6332
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071371
Kidney sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81008
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03935
Bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.721
Cardiovascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.797
AB-92-GP61_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.591825
Spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.483
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RQ-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40478
Nucleosomal methylation activator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.637
Renal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.843
Adrenocortical carcinoma_ACC_TCGA-OR-A5JK-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BRAF_knockdown_193_GSE5481	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.82484
GSE152699,GSE152723_3_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03004
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.077
SWI/SNF superfamily-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.154
MYC	ENCODE Transcription Factor Targets	1.0	null
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0048
bile duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163994
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.274021
meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387794
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.468
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829227
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056155
ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.147
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378143
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053565
Parapsoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.16
Testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.264
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.46
myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.172657
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338177
monoclonal gammopathy of uncertain significance	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.285444
Ewing sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.034
esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
Uterine Carcinosarcoma_UCS_TCGA-N5-A59F-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044554
SP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	129.753
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7524
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.4564
imr5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.629
magea3	GeneRIF Biological Term Annotations	1.0	null
1HAEo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.912
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904424
Leukocyte disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.215
496100443_HIP_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	14.2056
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.84
GSE195663_0_v_3_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5644
MELAS - Mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes_Muscle - Striated (Skeletal) (MMHCC)_GSE1462	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.48346
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51684
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079182
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9099
Heart cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
Sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.735
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.455
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.773569
Adrenocortical carcinoma_ACC_TCGA-OR-A5LD-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.267
Male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.061
synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.11
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_2_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A707-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-QA-A7B7-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE130401_4_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Lung adenocarcinoma_LUAD_TCGA-75-5147-01A-01R-1628-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pleomorphic liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.647
Sarcoma_SARC_TCGA-Z4-A9VC-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Connective tissue benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.595
transcriptional repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.314465
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2691
Lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.299
Bone angioendothelial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.391
Brain Lower Grade Glioma_LGG_TCGA-S9-A6U6-01A-12R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EWSR1-negative small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
Liver hepatocellular carcinoma_LIHC_TCGA-CC-A7IK-01A-12R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GS-A9TV-01A-11R-A38C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.095
Malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.101
Epithelioid sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.809
hsa-miR-518a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
A-VN-1203-2004(H5N1)_Day7-10^2pfu_22074594_GSE33263	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.2782
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.4
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.657
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3426
hsa-miR-4500	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
hsa-miR-185	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
Ovarian clear cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.023
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.51331
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.872
Prostatic Neoplasms	CTD Gene-Disease Associations	1.0	1.16833
E2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2978
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9274
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.336
urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ut1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.614
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.76315
Chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.285
melanoma	GeneRIF Biological Term Annotations	1.0	null
stage	GeneRIF Biological Term Annotations	1.0	null
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226926
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.90399
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
GSE77108_0_v_1_saha_human	RummaGEO Drug Perturbation Signatures	-1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0086
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100377
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0251
brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42191
Childhood Synovial Sarcoma	DisGeNET Gene-Disease Associations	1.0	null
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.393
ZNF766	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.114
GSE171837_0_v_3_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.252774
E2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.3979
PMC7305081-10120_2020_1045_MOESM1_ESM.xlsx-Tab2-Mutation-MAF_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7677-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.6448
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.110214
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929043
hsa-miR-2276	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.483604
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07177
Brain Lower Grade Glioma_LGG_TCGA-FG-A4MT-02A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41N-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-RS-A6TO-01A-32R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.489
mycosis fungoides	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226607
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
Skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.735
Fibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
Synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.681
MEF2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4739
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51833
Prostate adenocarcinoma_PRAD_TCGA-YL-A8S8-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050887
Fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.634
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
DNA packaging complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.177
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
hsa-miR-4667-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
SOX14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1811
Respiratory Sounds	CTD Gene-Disease Associations	1.0	1.05015
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13085
Knee	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.261
Rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.818
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936744
14993899-TableS1	GeneSigDB Published Gene Signatures	1.0	null
19074828-TableS4	GeneSigDB Published Gene Signatures	1.0	null
Tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.564
CTCF	ENCODE Transcription Factor Targets	1.0	null
Neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.146
EM-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BT20	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.619331
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.113328
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
GSE181517_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41676
Chondroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041865
GSE214931_1_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE85565_1_v_0_tcf21_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1HV-06A-21R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.65207
Vascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.777
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.61659
CIC-rearranged sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
GSE245270_1_v_3_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
Perineurioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.336
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220766
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042023
icSARS CoV_72Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-3.49162
Protein phosphatase type 1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.676
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39888
Synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.623
Peripheral Nervous System Diseases	CTD Gene-Disease Associations	1.0	2.88009
synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190251
Blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.057
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.3825
bile duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127011
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.269
PMC7068927-12885_2020_6709_MOESM1_ESM.docx-2-SOX17_SOX17	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-1208	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
hsa-miR-512-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
hsa-let-7a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Mesenchymal chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.605
cholangiocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163994
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9894
Osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.36
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.6304
Spindle cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.085
hsa-miR-4644	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
SUM1315MO2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.930154
specific	GeneRIF Biological Term Annotations	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.204
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.25
hsa-miR-3650	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Congenital mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.51
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03741
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.202
Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.245
Pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.485
Lung squamous cell carcinoma_LUSC_TCGA-66-2781-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Transcriptional misregulation in cancer	KEGG Pathways 2026	1.0	null
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.356
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079614
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232881
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.63719
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082785
nonsmall	GeneRIF Biological Term Annotations	1.0	null
Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Melanotic neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
BACH1-22875853-CHIP-PCR-HELA-AND-SCP4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8244
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083162
GSE130401_6_v_3_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE70935_2_v_0_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.9784