association	dataset	threshold value	standardized value
CTCF_H1-hESC_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.440658
Dmrt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	172.856
lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.184424
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Cardiovascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.803
DNA packaging complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.182
XBP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.427
Mesenchymal cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.781
PRC1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.528
GSE171837_3_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2693
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829227
Notochordal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.332
UM-UC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40357
macromolecular complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041729
bone marrow cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.113328
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.566
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
MDA-MB-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
well-differentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.729
Atf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.757
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.347
Synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.686
12747878-Table3	GeneSigDB Published Gene Signatures	1.0	null
Histiocytoid hemangioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
Utricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
Hmga1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	190.884
Dlx5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	112.681
Multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.318
musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.36161
Endometrial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70355
Kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.499
ctnnb1_21565795_adrenocortical_adenomas_lof_mouse_gpl570_gds3912	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.126639
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.602
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.378
Alveolar rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.908
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_2_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044554
A-375 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
CRCGN016_MCF10A.TP53.M_24H:O11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.37729
hsa-let-7g	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	115.213
hsa-miR-4439	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
RCOR1_02_204	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.68397
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.744
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	103.034
Peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.622
Rarg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	378.804
central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.252774
Chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.563
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051195
epidermis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.067612
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
Stat4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	325.254
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Leiomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.179
Central Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
CRCGN017_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.66896
Clear cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.855
b-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.107977
nuclear body	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.192423
nucleoplasm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046224
intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
CRCGN015_MCF10A.TP53.M_24H:J07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.12086
Lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.274
b-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.148347
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	114.855
GLIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.6077
lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.338177
Spindle cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.091
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	111.832
496100458_FWM_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.13487
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.2717
CRCGN014_HEPG2_24H:H24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.03338
PMC9647903-13100_2022_279_MOESM9_ESM.xls-Human_KRAB-ZFPs-Information_of_all_human_KRAB-ZFP_genes_ZKSCAN7	Rummagene Transcription Factor Associations 2026	1.0	null
Creb3l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.7354
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	145.684
Stat5a::Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	230.154
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	178.837
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.65926
hsa-miR-98	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
transcriptional repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.314465
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060714
lung	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.373868
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.452
Npas2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	54.7126
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.07
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05179
Epithelioid inflammatory myofibroblastic sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
Lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.473
MYC_GM12878_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2976
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
Kidney disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.301
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	484.8
hsa-miR-3125	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Malignant fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.881
hsa-miR-3916	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4038
rpmi-8226 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.450271
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	99.5069
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	398.359
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.998236
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6332
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
GSE191015_1_v_3_gsdmb_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Ovarian clear cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
Nobox	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	135.184
Central nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.219
Skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.734
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	158.786
blood	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.226926
CRCGN012_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.06491
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
Parapsoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.167
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76455
EFM-192C	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.83551
GSE210101,GSE210114_5_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.093
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0622
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
CRCGN015_MCF10A.TP53.M_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.06551
monoclonal gammopathy of uncertain significance	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.285444
GSE142210_3_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-3129-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.436802
Pleomorphic lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	339.763
reticulosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.252422
Arnt::Hif1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.4423
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	159.978
tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.182695
internal male genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.40478
GSE154337_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.700262
Respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.471
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49013
Perivascular tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.848
Spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.488
Nucleosomal methylation activator complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9766
Lung non-small cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.253
bile duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.127011
hsa-miR-3175	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.261
bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.578016
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	230.492
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.386
HMGB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11614
17597811-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
GSE212330_1_v_3_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN014_HEPG2_3H:L01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.25425
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.43727
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041478
Pleomorphic rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	114.141
Childhood liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.86
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.55771
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9714
Stat5b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	272.332
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.6317
Nr1h2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	122.787
NFIX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4936
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.307
18537972-TableS3	GeneSigDB Published Gene Signatures	1.0	null
CRCGN010_HEPG2_24H:D05	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.23422
skin	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.063212
Krueppel-associated box	InterPro Predicted Protein Domain Annotations	1.0	null
Zfp809	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	102.486
hsa-let-7d	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
vertebrate muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07376
Nkx3-2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	205.995
HCC44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81008
SF539	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.03161
hsa-miR-4779	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
CRCGN017_MCF10A.WT.HP_24H:O19	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.36295
Zic1::Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	63.5654
Renal vein	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.848
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	121.14
Ewing's sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.25
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0019
MITF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.11217
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03004
CRCGN014_HEPG2_24H:C01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.53434
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.35003
icSARS CoV_30Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.82863
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	384.253
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.3119
GSE210682_2_v_3_methadone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.210925
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889015
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
muscular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.071371
hsa-miR-1208	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Prdm15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	259.794
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.20823
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10118
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09637
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE102870_7_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HDQ-P1	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
Sarcomatoid renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.743
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4069
Retroperitoneal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
Renal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Ewing's sarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.944
Zfp335	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	144.881
Crx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	59.7002
Myeloid leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.037
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	283.988
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9531
SSXRD motif	InterPro Predicted Protein Domain Annotations	1.0	null
ZBTB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2277
bile duct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.152182
Endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	209.087
Esophageal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.826
ZBTB48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83607
mycosis fungoides	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.226607
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051739
Rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.077
496100460_TCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.60397
CRCGN008_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.77234
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2757
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1708
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.22182
respiratory system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.35743
GSE210101,GSE210114_6_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE223893_2_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.609735
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
pcg protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.393549
hsa-miR-4306	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
GSE158458_2_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.41676
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	217.981
Bone cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.691
High grade glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
Sarcomatoid carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.588
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	112.174
Peripheral Nervous System Diseases	CTD Gene-Disease Associations	1.0	2.88009
Fibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
Male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.053
Krueppel-associated box-related	InterPro Predicted Protein Domain Annotations	1.0	null
SK-MEL-37 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.51
nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054129
Melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.702
CRCGN015_HEPG2_48H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.52797
Olig2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.4041
Childhood osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
GSE193258,GSE193259_9_v_0_osimertinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.707221
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29341
esophageal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.095842
Histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.684
Testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.255
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.356
Malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.107
Extraskeletal myxoid chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.487
squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.289027
Angiosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.082785
Poorly differentiated chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.5
CTCF	ENCODE Transcription Factor Targets	1.0	null
Childhood Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
Chordoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990116
Hypopharynx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.074
Yy1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	89.5096
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.50086
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
PDCD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36035
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02538
esophageal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.159838
viscus	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Heart cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.266
Intestinal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.194
Myxofibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.355
Neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.557
plasma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.258917
nuclear part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04398
NCI-H211	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	265.249
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
CRCGN008_HEPG2_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.0319
connective tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064864
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.366
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	280.07
multiple myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.188596
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	119.453
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8784
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	132.727
Peripheral osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.03
Bladder	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51684
NFIB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.4586
hsa-miR-4731-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
CRCGN013_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.28798
HIF1A	Pathway Commons Protein-Protein Interactions	1.0	null
urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
COR-L311	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
Gastrointestinal stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.416
Malignant spindle cell melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.209
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.40655
RORA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.4167
multiple myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249977
hsa-miR-3678-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
GSE201309_5_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Retroperitoneal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.077
Liposarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.506
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Perineurioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.342
ZEB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4997
Muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.197
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8025
epidermal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07177
Synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.628
No annotation - 15	CM4AI U2OS Cell Map Protein Localization Assemblies	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929043
HPAF-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.586
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3489
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.36
multiple myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.460506
synovial tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.171852
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	101.047
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.68243
GSE210101,GSE210114_7_v_3_urod_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Skeletal muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.085
Myeloid neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.27
Lhx8	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	140.387
decitabine_homo sapiens_gpl570_gse30985	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
Lymphatic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
Rhabdoid cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.804
Nr5a2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	207.487
Neuroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.39
chlorambucil_homo sapiens_gpl570_gds2970	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
Immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.486
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4173
Adult fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.135
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041865
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MFM-223	COSMIC Cell Line Gene CNV Profiles	1.0	2.15593
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.315
14735469-Table2	GeneSigDB Published Gene Signatures	1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	227.107
hsa-miR-2467-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Esrrg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	159.841
hematopoietic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232881
Nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.623
hsa-miR-512-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	121.477
Squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.22
skin cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079182
Biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.724
Lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.466
CRCGN017_MCF10A.WT.HP_24H:K18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.11559
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.67951
bladder	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CRCGN016_MCF10A.TP53.M_24H:F11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.67649
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.053565
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.417
CRCGN012_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.1489
GSE116810_5_v_1_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.04118
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.040751
Sox6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	147.703
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
hsa-miR-4458	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.190786
hsa-miR-3118	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
esophagus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.304279
sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.324458
Nrf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.4682
t-lymphocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.310059
lymphoid tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.392686
Connective tissue benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.601
Ar	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	274.153
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30517
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.109
Rhabdomyosarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.973
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.117
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	261.592
Gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.212
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7126
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.262
Urinary system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.48
CRCGN017_MCF10A.TP53.M_24H:P21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.60766
Ovary epithelial cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.216
HS-SY-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.408
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1922
SAOS-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.968
Congenital mesoblastic nephroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.516
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
sucrase-isomaltase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.924
NCI-H2347	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25138
Urinary system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.373
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	195.175
18537972-TableS2	GeneSigDB Published Gene Signatures	1.0	null
GSE178714_5_v_2_smad2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49317
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
IM-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.681
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2198
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.503
Childhood fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	246.718
Hic1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.8772
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.61659
lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
Nervous system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.196
CTCF_GM20000_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Small cell sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.721
Fascicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.946
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.25669
RUNX2	JASPAR Predicted Transcription Factor Targets	1.0	null
Adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.23
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
cartilage	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.100377
A-CA-04-2009(H1N1)_3Hour_None_GSE37571	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.24505
GSE182179_5_v_4_kdsr_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.69967
Pseudosarcomatous fibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	48.9725
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23655
hsa-miR-3650	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	85.8064
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.467
Melanotic neuroectodermal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
CEBPB_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	345.027
Leukemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.241
GSE70935_2_v_0_cyfip1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hsa-miR-586	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.543
hs431	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.154
peripheral nervous system neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.094049
GSE223893_11_v_9_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Tendon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.493
skeletal muscle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.13085
CIC-rearranged sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
nervous system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.274021
cholangiocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163994
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4529
skeletal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.083162
cholangiocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.606112
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE245270_2_v_3_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN016_MCF10A.TP53.M_24H:C10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.49351
iPS-18 Cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.09411
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
Gli1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	100.922
tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.187741
Neurofibroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.152
GBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.878
ZNF770	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9753
Nfatc1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	269.671
Spi1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	414.657
u266	HPA Cell Line Gene Expression Profiles	1.0	0.89863
CRCGN010_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.44673
Chondroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.015
Fibrous histiocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.64
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.375
Rhabdomyosarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.822
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.528
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	144.044
Myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.069
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	236.534
Adamantinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3711
Connective tissue cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.837
Hemangiopericytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.97
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0515
skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048777
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4632
Spindle cell rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
GSE102870_11_v_0_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Vascular cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.784
melanoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081973
SW-872 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.532
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3652
XBP1	Pathway Commons Protein-Protein Interactions	1.0	null
Neuroblastoma	DisGeNET Gene-Disease Associations	1.0	null
bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.338341
bone marrow cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.137633
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	159.208
hsa-miR-3150a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.11
imatinib_homo sapiens_gpl96_gds3043	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Desmoplastic small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.544
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Tfcp2l1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	64.5225
hsa-miR-4644	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Juxtacortical chondroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.132
Smooth muscle tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.168
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Pleuropulmonary blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.039
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	129.659
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843118
GSE70935_3_v_5_cyfip1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Synovial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.238
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	171.444
CRCGN014_HEPG2_24H:A20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.62916
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.05977
cutaneous t cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.184424
Pelvis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.168
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.153
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.451428
Spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.823
Isl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.7646
ut1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
esBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.068
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039504
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Blastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
Dlx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	94.9316
Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	201.082
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.1241
Desmoid tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.074
hsa-miR-134	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Pontocerebellar hypoplasia type 13	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.092
GSE245270_1_v_3_isoproterenol_human	RummaGEO Drug Perturbation Signatures	1.0	null
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.110214
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.343
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0907
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.965496
HS 936.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.929043
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.99952
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
Prdm4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	239.68
GSE235701,GSE261434_0_v_1_enasidenib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Uterine disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.192
Heart sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.352
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	309.501
Intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.15
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2653
hsa-miR-183	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936744
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.705583
GSE123943_2_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3138
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
leukocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.267102
Bhlha15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	108.057
SRF	JASPAR Predicted Transcription Factor Targets	1.0	null
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.08771
hsa-miR-4797-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.136254
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.185
RSC-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.661
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.054934
psoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.144648
CBFB_01_43	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.3953
lung cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.400826
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.23492
TFAP2C	JASPAR Predicted Transcription Factor Targets	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
u-266 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.527928
POLR2A	ENCODE Transcription Factor Targets	1.0	null
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23655
20208059-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
Renal cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.234
Foxn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6275
20436685-ST4-1	GeneSigDB Published Gene Signatures	1.0	null
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
Epithelioid cell synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.104
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	321.415
ZNF692	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96087
hematopoietic system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.286736
plicamycin_homo sapiens_gpl570_gse25127	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	149.569
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622183
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.51331
Wt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	185.233
integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048026
Fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.784
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	209.924
GSE74251_2_v_1_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Spermatocytoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.185
Synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.458
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.904424
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.1362
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE201309_4_v_3_matrine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CRCGN016_MCF10A.TP53.M_24H:O15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.59288
Nr1h4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	109.425
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01508	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.94455
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.235964
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.05477
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	68.5234
17597811-SuppTable7	GeneSigDB Published Gene Signatures	1.0	null
GSE116810_5_v_3_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H3122	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.23503
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
hsa-miR-2276	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
bile duct cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.163994
Mafg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	221.64
Neurod2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	197.804
melanoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.483604
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	189.424
Rfx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	139.642
Parosteal osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.113
CRCGN015_MCF10A_48H:D08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.073
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.461
PMC8242083-41467_2021_24064_MOESM4_ESM.txt--HSF1_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5312
Stat6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	273.418
42-MG-BA	COSMIC Cell Line Gene CNV Profiles	-1.0	-2.99615
Ewing sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.033
Ppara	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	127.585
Dermatofibrosarcoma protuberans	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.63
Atf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	129.938
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.136
myc_17159920_cancer_cell_lines_lof_human_gpl570_gds2526	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	-1.0	-0.485219
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	156.72
meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.387794
Urinary bladder	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Coffin-Siris syndrome 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
Sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.734
Endometrial stromal sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.117
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	222.591
SSX	InterPro Predicted Protein Domain Annotations	1.0	null
NFIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.1698
GSK3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40894
Melanoma	DisGeNET Gene-Disease Associations	1.0	null
hsa-miR-4700-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	148.082
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	282.444
CRCGN016_MCF10A.TP53.M_24H:I11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.61133
Superior vena cava	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Bone marrow cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.291
Synovial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.009
Lymphatic system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.486
estradiol_homo sapiens_gpl570_gds3283	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Sarcoma with BCOR genetic alterations	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
non-Hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.131
Dedifferentiated chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.008
hsa-miR-4667-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
15257931-SuppTableA	GeneSigDB Published Gene Signatures	1.0	null
estradiol_homo sapiens_gpl14550_gse35034	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
hsa-let-7f	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
KHOS-240S cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.232
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5883
CRCGN017_MCF10A.TP53.M_24H:K18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.41226
CRCGN015_MCF10A_48H:G06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.20145
POLR2A_GM12878_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Malignant mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.027
Bone cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.72
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.3797
synovial sarcoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.47662
Leukocyte disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
Infantile myofibromatosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
GOLGB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.12307
RFX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9965
Epithelioid sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.815
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2465
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.973601
BCOR complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.729
GSE89154_1_v_2_proscillaridin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.843
Cellular schwannoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
ae3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.582
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	169.799
Lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
18338247-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Gli2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	118.017
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0784
Bone disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.158
Intrahepatic Cholangiocarcinoma	DisGeNET Gene-Disease Associations	1.0	null
Zbtb2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	75.0
myeloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.165014
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9277
CRCGN017_MCF10A.WT.HP_24H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.76845
Mediastinal mesenchymal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.311
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.937
20077526-TableS3	GeneSigDB Published Gene Signatures	1.0	null
GSE171837_0_v_3_bortezomib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.754
skeletal muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.087682
Peritoneal mesothelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.551
CRCGN016_MCF10A.TP53.M_24H:H09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.41424
Dedifferentiated liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.907
Bach1::Mafk	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	278.605
Inflammatory myofibroblastic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
Embryonic germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.6
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041275
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.829227
GSE133516_0_v_2_kat7_human	RummaGEO Gene Perturbation Signatures	1.0	null
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.878309
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.990116
Arid5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	133.502
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2639
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.978796
Spindle cell synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.759
Liposarcoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
Primary hematopoietic stem cells	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	2.13956
STAT5_01_239	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60198
17597811-SuppTable9	GeneSigDB Published Gene Signatures	1.0	null
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905196
hsa-miR-527	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
mature t-cell and nk-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.143687
Musculoskeletal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.805
Mesenchymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.363
Hmx2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	228.585
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046102
Synovium neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.249
Lhx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.522
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.096654
Bone angioendothelial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.398
deafness-intellectual disability, Martin-Probst type syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953347
BLM cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.059
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	156.607
Cholangiocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03935
Vdr	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	102.367
protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042023
hsa-miR-4500	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
1HAEo cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.917
Sox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	180.693
Stat5a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	233.961
Twist2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.5946
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.474
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	86.25
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03741
Hand1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	49.1902
Six3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	76.0919
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.843118
Fetal Heart	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-0.874348
biphasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.870825
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05132
CRCGN013_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.58001
Nfatc2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	307.647
Osteosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.366
Congenital fibrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.437
non-hodgkin lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.127952
mature b-cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.135184
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.36041
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.278
hsa-miR-518a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
hsa-let-7a	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Hemangiopericytic tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.969
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.582
Bone sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.675
HCC1954	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03643
Juvenile	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.064
Groin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	37.6713
GSE210682_2_v_1_methadone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CRCGN014_HEPG2_3H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.2918
hsa-let-7i	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
lipofibromatosis-like neural tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.352
Cellular myxoid liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.758
Thap11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	192.862
UBTF_02_198	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60407
sezary's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.542767
Liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.055
hsa-miR-4697-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.92594
MYC	ENCODE Transcription Factor Targets	1.0	null
testis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.65207
cSARS Bat SRBD_72Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.66424
Neurilemmoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.436
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	158.727
19893615-Table3	GeneSigDB Published Gene Signatures	1.0	null
Smooth muscle cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.179
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.877
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9297
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905196
GSE232558_0_v_2_fbxl12_human	RummaGEO Gene Perturbation Signatures	-1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.081419
hsa-miR-574-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
Prdm14	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	95.8235
15489324-TableS2	GeneSigDB Published Gene Signatures	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9274
GSE207514,GSE207515_1_v_3_acetylcysteine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
urinary bladder	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
CREB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3725
hsa-miR-501-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Knee	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.265
GSE171837_1_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Brain cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.111
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.987249
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	120.255
respiratory system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.378143
melanocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.079614
plasma cell neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.161523
hsa-miR-431	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
hsa-miR-1271	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
PAX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5177
Lhx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	58.3509
hsa-miR-502-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Epithelioid malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.495
Pleomorphic liposarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.653
CRCGN015_MCF10A.TP53.M_24H:C24	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.05509
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056155
synovium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.190251
Endometrial stromal tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.094
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.39
Synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.458
hsa-let-7c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.068
Arntl	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	69.6063
Uterine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07917
melanoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.546136
myeloma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.355235
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.29456
Nr2e1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	167.398
PcG protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.712
SREBF2	JASPAR Predicted Transcription Factor Targets	1.0	null
SWI/SNF superfamily-type complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.159
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
hsa-miR-199b-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.670641
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.36
Glucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.799
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.328
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.850845
GSE142210_9_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-3610	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NR4A2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0315
Rhox11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2775
klf4_17017123_rko_gof_human_gpl96_gds1942	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	1.48602
Brahma complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.728
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.295132
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.03908
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01549	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.3976
malignant peripheral nerve sheath tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.448817
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	127.414
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Ewing's sarcoma family tumor cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.924
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Glandular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.233
Zic2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	65.5442
CRCGN015_MCF10A_48H:H23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03434
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1304
CRCGN015_HEPG2_48H:J10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.2201
Mesenchymal chondrosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.611
Alveolar soft part sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.614
nBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.064
skeletal muscle cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.609332
Nerve sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.27
Nkx3-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	73.9926
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.263
hsa-let-7b	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Kidney sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.42
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15172
biliary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.141126
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.396
Mlxip	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.0
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.979602
PMC3470785-NIHMS377161-supplement-14.pdf-109-PDX1_PDX1	Rummagene Transcription Factor Associations 2026	1.0	null
Colorectal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.196
CRCGN014_HEPG2_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.95118
bone marrow	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.278603
LZTR1	Pathway Commons Protein-Protein Interactions	1.0	null
Tendon sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.568
KLF5	JASPAR Predicted Transcription Factor Targets	1.0	null
Urinary tract	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CRCGN015_MCF10A_48H:A16	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.03946
catenin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.337373
17597811-SuppTable3	GeneSigDB Published Gene Signatures	1.0	null
Gfi1b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	137.671
lymphoid cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.336704
hsa-let-7e	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
GSE110268_0_v_3_foxd1_human	RummaGEO Gene Perturbation Signatures	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.00414
myeloma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.172657
GSE133516_5_v_2_kat7_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE169356_0_v_1_ivermectin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
extrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.178299
hsa-miR-4801	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1755
Childhood kidney cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.79
CRCGN010_HEPG2_24H:D11	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.27715
Smad4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.708
non-small cell lung carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.220766
EWSR1-negative small round cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
NR1H4::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8048
u26684	HPA Cell Line Gene Expression Profiles	1.0	1.60497
Gata3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	113.713
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.187415
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.40625
Pleura	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.489
extrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16298
NFYA	JASPAR Predicted Transcription Factor Targets	1.0	null
TE-671 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.572
Peripheral nerve sheath neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.003
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5266
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.33998
Musculoskeletal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.621
peripheral t-cell lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.145381
HUP-T4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25138
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.826942
No annotation - 4	CM4AI U2OS Cell Map Protein Localization Assemblies	1.0	null
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.5321
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.5445
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	109.814
monophasic synovial sarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.883111
parapsoriasis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.950769
karpas707	HPA Cell Line Gene Expression Profiles	1.0	0.973436
SNU-182	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09114
brain cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.42191
Ewing's family tumor cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.243
Meningioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.138
RD-ES cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.821
GSE229914_2_v_3_keap1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	188.73
hsa-miR-185	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
hsa-miR-4641	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
GSE102870_7_v_9_nr1h4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.367
intracellular organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041391
CRCGN014_HEPG2_3H:J13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.07323
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.774114
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	370.095
npBAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.972
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.00541
hsa-miR-4708-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Zfp961	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.3082
ESC/E(Z) complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.603
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.51833
Arnt	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.3
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
LAN-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.715
synovium cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.11
Bcl11b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	111.624
Jun	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	159.08
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.0996
CRCGN013_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.75551
Nkx2-1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	103.515
GSE123943_4_v_0_sox1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sarcomatoid mesothelioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.42
mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060776
16397242-Table1	GeneSigDB Published Gene Signatures	1.0	null
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1838
Transcriptional misregulation in cancer	KEGG Pathways 2026	1.0	null
Hoxa11	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	94.3372
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.424
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	281.283
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-8cell_CTCF-Unnamed_3_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
SWI/SNF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.357
NFIC	JASPAR Predicted Transcription Factor Targets	1.0	null
ATPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.152
PAX9	Pathway Commons Protein-Protein Interactions	1.0	null
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.936744
CEBPB	ENCODE Transcription Factor Targets	1.0	null
spindle cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.455284
Muscle benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
POLR2AphosphoS2_K562_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Large intestine cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.195
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	186.782
GSE212330_1_v_0_azacitidine_human	RummaGEO Drug Perturbation Signatures	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050887
Glomus tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
Npas4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.6645
Tcf12	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	78.5012
hsa-miR-199a-3p	TargetScan Predicted Conserved microRNA Targets	1.0	0.670641
hsa-miR-3136-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
Bone marrow disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.304
Tbx6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	92.4748
Embryonal rhabdomyosarcoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.237
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.857266
Malignant mesenchymoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.311
Zic3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	62.3333
imr5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.634