association	dataset	threshold value	standardized value
488395315_TCx_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.61992
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.6776
496100377_PCx_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.48323
TCFL5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1615
HES7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6913
GLIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.509
PLAG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	235.944
GSE139455_7_v_3_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sec62/Sec63 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.763
PMC11754605-41467_2025_56327_MOESM3_ESM.xlsx-R157K_vs_MSX1-Gene_id_MSX1	Rummagene Transcription Factor Associations 2026	1.0	null
Gastrointestinal system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.359
Acute myeloid leukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
496100481_PCx_no dementia_no TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.09474
GSE138863_2_v_0_disulfiram_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC11754605-41467_2025_56327_MOESM3_ESM.xlsx-R157K_vs_MSX1-Gene_name_MSX1	Rummagene Transcription Factor Associations 2026	1.0	null
WE-48-PP43_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.649672
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC-2935 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.776
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8939
HAP-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.244
Endoplasmic reticulum Sec complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.76
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1064
Sec61 translocon complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.697
ERF::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4025
Respiratory system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ZNF281	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	377.071
ZNF669	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.655
Grey cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.722
Mitochondrion	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
PMC10319804-41467_2023_38747_MOESM10_ESM.xlsx-cARID1A_KD_genes_down-gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GSE157282_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
CTCFL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	92.3369
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.196
HCC-15	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.434
ZNF320	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	408.673
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5052
EMC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.63
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5781
RCAF complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.677
PMC11772884-41421_2024_747_MOESM6_ESM.xlsx-8_DEGs_RUNX1-OE_vs_control-Gene_Symbol_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ZNF816	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3742
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
SP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	313.661
ZNF148	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	129.258
GSE111247_11_v_9_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
GSE163282_12_v_8_aspirin_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE195559_6_v_4_notch1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GLIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.4579
GSE149621_3_v_1_olaparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
CAF-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.1
496100334_PCx_probable Alzheimer's disease_no TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.90664
Integral component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.332
Leukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Oligosaccharyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.259
496100436_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.36554
496100639_TCx_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.77208
496100660_FWM_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.32532
ETV4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8866
TFAP4::ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.8831
Myeloid leukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Integral component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.318
GSE143782_6_v_5_calcitriol_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.258
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_DBP_ALL-SYMBOL_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
PMC10082806-42003_2023_4756_MOESM4_ESM.xlsx-AML2_RelvsTum_DMRs_anno-annot_symbol_RUNX3	Rummagene Transcription Factor Associations 2026	1.0	null
Cementum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.827
Mucinous stomach adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
Perineuronal net	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.844
PMC7029036-41598_2020_59469_MOESM2_ESM.xlsx-NR4A1_and_DHE_p_0_05_1_5FC-Gene_NR4A1	Rummagene Transcription Factor Associations 2026	1.0	null
BA-56-QV45_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.485183
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.3139
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.278
GET complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.655
GSE138863_2_v_1_disulfiram_human	RummaGEO Drug Perturbation Signatures	1.0	null
EF-74-KW12_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.227439
GSE111881_0_v_1_znf768_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1886
PLAGL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.3466
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3409
ZIC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.53
Acute promyelocytic leukemia cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Adrenal gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HEY2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4555
ZNF701	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	125.264
ZBED4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	139.865
GSE166783_1_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
Mitochondrial ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.236
GSE174701_5_v_8_maml3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE171352_2_v_3_glucagon_human	RummaGEO Drug Perturbation Signatures	1.0	null
HEY1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5603
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4805
GSE95077_5_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.4583
Skin	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.917
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	151.357
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.302
KLF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	204.317
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.936
GSE111247_11_v_13_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100486_PCx_no dementia_no TBI_86_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.30409
GSE111247_11_v_3_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H209 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.347
HES5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3032
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.8481
PMC7029036-41598_2020_59469_MOESM2_ESM.xlsx-NR4A1_vs_GFP_adj_pval_0_05-Gene_NR4A1	Rummagene Transcription Factor Associations 2026	1.0	null
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
KLF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.5231
GSE226770_1_v_6_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.2197
GSE224547_1_v_0_cftr_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC9753996-jci-132-160767-s182.xlsx-EBF1_associated-A1BG_EBF1	Rummagene Transcription Factor Associations 2026	1.0	null
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7136
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
Hip joint	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.866
Colorectal adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.488
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.819
SMAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5516
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8267
GSE193993_4_v_3_sstr2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Colon adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
PAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6299
PMC9992472-41467_2023_36735_MOESM7_ESM.xlsx-SOX11_ChIP_in_IMR-32-Unnamed_12_SOX11	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_3_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6394
KLF10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	306.613
GSE111247_11_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Mpf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.807
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.90828
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	71.6574
KLF14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	239.798
496100318_PCx_probable Alzheimer's disease_TBI_100+_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.59686
Cell type benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.221
GSE139455_7_v_6_stat3_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE111247_11_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Lung	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.041
GSE169205_4_v_7_sirt5_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZBTB7A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4701
AML-12 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.291
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6803
Blood cancer cell	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Perisynaptic extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.84
PMC10769395-media-8.xlsx-S8E_ETS1_ETS1-ChIP_down-Unnamed_6_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE129241_4_v_2_valproic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE166783_4_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
Intestinal benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.365
PMC7468443-Data_Sheet_2.xlsx-DEG_6h_LPS-Unnamed_7_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Cytosolic large ribosomal subunit	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.946
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.067
496100581_TCx_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.28107
GSE158182_4_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100485_PCx_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.01431
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_CTCF-Unnamed_3_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-CCRF-CEM_EV_vs_ectopic_TET2_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
Intrinsic component of organelle membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.309
HES2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2218
KLF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	172.12
GSE185872_0_v_2_methotrexate_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.8855
PMC6823153-NIHMS1535502-supplement-3.xlsx-LSD1_SupplData1-Supplementary_Data_1_Potential_common_target_genes_of_LSD1_and_GATA3_GATA3	Rummagene Transcription Factor Associations 2026	1.0	null
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.1678
BC-25-VR48_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.494332
GSE172016_2_v_1_paclitaxel_human	RummaGEO Drug Perturbation Signatures	1.0	null
Embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.7968
GSE111247_0_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
ETV5::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.0948
496100636_FWM_probable Alzheimer's disease_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23461
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	168.564
A-427 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.481
SP9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	82.7682
Organellar ribosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.227
Appendicular lean mass	GWAS Catalog SNP-Phenotype Associations 2025	1.0	2.5
Intrinsic component of endoplasmic reticulum membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.331
synapse-associated extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.839
GSE195568_3_v_4_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.32893
Motion sickness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.244
GSE195568_2_v_4_palbociclib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	301.977
PMC10769395-media-8.xlsx-S8E_ETS1_ETS1-ChIP_down-Ebegboni_et_al_Supplemental_Table_S8E_Genes_decreased_following_the_ectopic_expression_of_ETS1_and_bound_by_ETS1_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
KLF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.6852
GSE158182_5_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	1.0	null
HES1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.8183
496100355_HIP_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.45666
496100384_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.77676
GSE185744,GSE185747_0_v_1_sox9_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Photoreceptor proximal connecting cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.609
ZNF610	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.8093
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
JD-44-KF86_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.322158
NTERA-2 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.675
Small cell lung cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.928
ZIC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.061
ZNF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.1249
Gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
SP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	223.916
KC-48-OO62_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.57154
Nuclear exosome targeting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.085
GSE166783_3_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
Craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.771
ZIC5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.8383
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_4_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE143782_7_v_11_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF740	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	148.552
496100307_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18071
496100427_FWM_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.4703
Exodeoxyribonuclease V complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.565
PMC9745835-supp_079195.122_Supplemental_Table_1.xlsx-ADAR-KD-Gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.387
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ARNT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0357
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3397
PMC10769395-media-8.xlsx-S8E_ETS1_ETS1-ChIP_down-Unnamed_1_ETS1	Rummagene Transcription Factor Associations 2026	1.0	null
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
GSE174701_1_v_2_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
GTEx Breast 20-29 vs 60-69	GTEx Tissue-Specific Aging Signatures	-1.0	-3.72076
Viscus	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
TFDP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9213
Embryonal carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
Hereditary nonpolyposis colorectal cancer type 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.594
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.45448
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	108.609
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	182.154
Craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.007
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8572
GSE173232_1_v_0_sf3b1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE140965_2_v_3_mybpc3_human	RummaGEO Gene Perturbation Signatures	1.0	null
LA-42-ER00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.248262
Acidocalcisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.522
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_DBP_ALL-GENE_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H69 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.153
Box C/D RNP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.574
PAT complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.064
HULC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.796
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	187.423
CTCF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	272.566
ZNF530	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.4359
E2F6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.8477
PMC9992472-41467_2023_36735_MOESM7_ESM.xlsx-SOX11_ChIP_in_IMR-32-Unnamed_13_SOX11	Rummagene Transcription Factor Associations 2026	1.0	null
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.9209
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3188
PMC11385366-Table2.xlsx-DBP-Overlapped_Gene_DBP	Rummagene Transcription Factor Associations 2026	1.0	null
GSE82032_3_v_2_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
el2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.509
GSE111247_11_v_6_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
PRDM9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	304.715
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.9846
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.1242
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	125.689
GSE128099,GSE128159_3_v_2_gemcitabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PATZ1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	434.037
496100500_PCx_probable Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.57463
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_CTCF-Unnamed_2_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.275
SK-HEP-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.877
496100517_TCx_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.05411
Integument	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_2_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
KLF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	249.673
Multimerin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.039
TIM22 mitochondrial import inner membrane insertion complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.828
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.01315
GSE116930,GSE116935_3_v_0_hes7_human	RummaGEO Gene Perturbation Signatures	1.0	null
Organ system benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.003
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8104