association	dataset	threshold value	standardized value
PRMT1	Pathway Commons Protein-Protein Interactions	1.0	null
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7368
cellular_component	GO Cellular Component Annotations 2015	1.0	null
abnormal response to tactile stimuli	MPO Gene-Phenotype Associations	1.0	null
SP in entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.21749
WSU-NHL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
IGF2BP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE171837_3_v_1_bortezomib_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
DHX36	Pathway Commons Protein-Protein Interactions	1.0	null
form	GeneRIF Biological Term Annotations	1.0	null
auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.05315
Blood plasma	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.067
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.14235
HSPB1	Pathway Commons Protein-Protein Interactions	1.0	null
BC3C	CCLE Cell Line Gene CNV Profiles	1.0	1.46343
Edinger-Westphal nucleus (accessory oculomotor nucleus)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.14983
MAFK_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cochlear degeneration	MPO Gene-Phenotype Associations	1.0	null
NCIH1915	DepMap CRISPR Gene Dependency	1.0	2.23122
medial portion of STH	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.212
Sensorineural hearing loss	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.945
external granular (germinal) layer of upper rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16992
abnormal gait	MGI Mouse Phenotype Associations 2023	1.0	null
PDXK	Pathway Commons Protein-Protein Interactions	1.0	null
Ventral disc	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.889
DU 145	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88229
GTEX-S7SE-0011-R4A-SM-2XCDB	GTEx Tissue Sample Gene Expression Profiles	1.0	0.894905
GTEX-XUJ4-1626-SM-4BONV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.15957
SG in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11507
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5536
HDQP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39059
outer CP in rostral cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.933692
blood platelet	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0827
causes	GeneRIF Biological Term Annotations	1.0	null
isthmic portion of paranigral nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.83636
shows	GeneRIF Biological Term Annotations	1.0	null
Calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.037
GTEX-X5EB-2026-SM-4E3KA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08296
hsa-miR-224	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Purkinje cell layer of CbVCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.18444
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.0166
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0601
GSE181959_3_v_2_dextran_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
IZ in dorsomedial parietal cortex (area 7m)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.839362
496100384_HIP_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.52058
LN-405	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Paraflocculus, molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0238
GLMN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58443
Skin disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.013
pancreas	GTEx Tissue Gene Expression Profiles	-1.0	-0.978064
KRT6B	Pathway Commons Protein-Protein Interactions	1.0	null
Viral labyrinthitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.038
Plantlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.032
posterior midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09783
dorsal cortical nucleus of inferior colliculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09695
Prostate adenocarcinoma_PRAD_TCGA-HC-A631-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3232
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
RBMXL2	Pathway Commons Protein-Protein Interactions	1.0	null
voltage-gated monoatomic cation channel activity	GO Molecular Function Annotations 2025	1.0	null
CLDND1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35724
FOSL1-28411283-MDA231-LM2-4175-HUMAN-BREASTCANCER	ChEA Transcription Factor Targets 2022	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3561
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
CP in rostral hippocampus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.15129
Cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.807
APC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26958
IRGQ	Pathway Commons Protein-Protein Interactions	1.0	null
KRT78	Pathway Commons Protein-Protein Interactions	1.0	null
SCAMP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03016
striatum_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.20543
cone-rod dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
YY2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7256
localization	GO Biological Process Annotations 2015	1.0	null
TXN	Pathway Commons Protein-Protein Interactions	1.0	null
prepositus hypoglossal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.14983
Autosomal recessive nonsyndromic deafness 79	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.2
STIP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE231524,GSE231526_0_v_1_dusp6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
all	GWASdb SNP-Phenotype Associations	1.0	0.048699
SSR4	Pathway Commons Protein-Protein Interactions	1.0	null
Usher syndrome type 1F	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
medial (fastigial) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14801
ATF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9932
NCL	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-3662	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
PTPRU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.38266
abnormal otolithic membrane morphology	MPO Gene-Phenotype Associations	1.0	null
Autosomal recessive nonsyndromic deafness 27	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.638
Prdm5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.4811
blood	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
hsa-miR-4740-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
GSE121198,GSE129782_1_v_0_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
dg2	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.779
external side of plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
lung	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
LN319	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3308
Prostate-hillock-club cell of prostate epithelium	Tabula Sapiens Gene-Cell Associations	1.0	1.50837
F-actin capping protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.991
NFE2L2-22581777-LYMPHOBLASTOID-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
TGM1	Pathway Commons Protein-Protein Interactions	1.0	null
West Nile encephalitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.071
EPRS	Pathway Commons Protein-Protein Interactions	1.0	null
urogenital system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
analgesia	MPO Gene-Phenotype Associations	1.0	null
CSTA	Pathway Commons Protein-Protein Interactions	1.0	null
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7366
hematopoietic cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.009581
Proboscis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.107
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
abnormal cochlear labyrinth morphology	MPO Gene-Phenotype Associations	1.0	null
GTEX-XAJ8-1326-SM-47JYT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.62547
Autosomal recessive nonsyndromic deafness 16	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.227
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.46144
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
ROR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1519
RPS17	Pathway Commons Protein-Protein Interactions	1.0	null
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25836
MZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.858166
PHB2	Pathway Commons Protein-Protein Interactions	1.0	null
Outer hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.093
hippocampus (hippocampal formation)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.26921
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.2657
External female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.214
FAM98A	Pathway Commons Protein-Protein Interactions	1.0	null
CAD	Pathway Commons Protein-Protein Interactions	1.0	null
GSE211215_1_v_0_pemetrexed_human	RummaGEO Drug Perturbation Signatures	1.0	null
Petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.228
Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A3OP-01A-21R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.56843
GSE135030_8_v_1_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
abducens motor nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2498
Vestibular labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.315
RPL7	Pathway Commons Protein-Protein Interactions	1.0	null
dominates	GeneRIF Biological Term Annotations	1.0	null
Usher syndrome type 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.863
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.745
RPL24	Pathway Commons Protein-Protein Interactions	1.0	null
SMAD4-21741376-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SNU738	CCLE Cell Line Gene Expression Profiles	1.0	2.80781
ventral posterior inferior nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.858019
abnormal sensory capabilities/reflexes/nociception	MPO Gene-Phenotype Associations	1.0	null
VZ in dorsolateral prefrontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.53787
lateral intermediate part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.70597
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.13078
GTEX-NPJ7-0011-R2a-SM-2I3GF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.924661
RPL23A	Pathway Commons Protein-Protein Interactions	1.0	null
HYOU1	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal recessive nonsyndromic deafness 76	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.381
DCAF10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32882
SCC4	CCLE Cell Line Gene Expression Profiles	-1.0	-1.69596
GTEX-Q2AI-0626-SM-48TZU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27466
muscle tissue disease	GWASdb SNP-Disease Associations	1.0	0.220767
abnormal nervous system physiology	MPO Gene-Phenotype Associations	1.0	null
dominant	GeneRIF Biological Term Annotations	1.0	null
SETDB1-19884257-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
RPL14	Pathway Commons Protein-Protein Interactions	1.0	null
Sox17	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.2495
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.913662
Sensillum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.459
abnormality of the cardiovascular system	GWASdb SNP-Phenotype Associations	1.0	0.046201
KS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RPS18	Pathway Commons Protein-Protein Interactions	1.0	null
Chloride channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.157
FLO-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
mode of inheritance	HPO Gene-Disease Associations	1.0	null
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
DAN-G	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
colliculus superior	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19405
LAMTOR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.51372
CTSA	Pathway Commons Protein-Protein Interactions	1.0	null
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3217
CAVIN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15127
496100545_HIP_possible Alzheimer's disease_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.21911
frontalcortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.85904
Usher syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.991
SSB	Pathway Commons Protein-Protein Interactions	1.0	null
spinal trigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.11438
ACOT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.63833
autosomal	GeneRIF Biological Term Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WH7G-1926-SM-4LVMM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13648
MZ in rostral midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19764
NCIH1105	CCLE Cell Line Gene Expression Profiles	-1.0	-1.83545
REH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PTPLAD1	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal sensory neuron morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal eye morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal otolith organ morphology	MPO Gene-Phenotype Associations	1.0	null
intermediate mantle of isBM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.1544
PEBP1	Pathway Commons Protein-Protein Interactions	1.0	null
RBM39	Pathway Commons Protein-Protein Interactions	1.0	null
KASUMI1	CCLE Cell Line Gene Expression Profiles	1.0	1.71143
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.10529
SPTAN1	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCA4	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-SNOS-0626-SM-4DM5F	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04243
RPL37A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.13134
GTEX-WFG7-1826-SM-3GIL1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1677
gjb2negative	GeneRIF Biological Term Annotations	1.0	null
PMC9170821-JCMM-26-3183-s001.xlsx-Astro_DAPI_ERG_VaDadj_vs_NC-Gene_ERG	Rummagene Transcription Factor Associations 2026	1.0	null
Primary somatosensory area, mouth, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.028
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.38108
Cluster of actin-based cell projections	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
Autosomal recessive nonsyndromic deafness 29	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.283
stomach	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.170152
ZCCHC24	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35978
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1501
CHTOP	Pathway Commons Protein-Protein Interactions	1.0	null
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.247
Lung squamous cell carcinoma_LUSC_TCGA-56-8304-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal recessive nonsyndromic deafness 24	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.67
m1 part of parabrachialis pigmentosus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21421
TUBB1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-X8HC-0526-SM-4E3JA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01351
SMC1A	Pathway Commons Protein-Protein Interactions	1.0	null
MDAMB361	DepMap CRISPR Gene Dependency	1.0	7.96151
H3K27ac_Panc1_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-326	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
CPD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.4955
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3249
496100365_HIP_probable Alzheimer's disease_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.17384
M14	COSMIC Cell Line Gene Mutation Profiles	1.0	null
inner CP in temporal polar cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.45877
GTEX-POYW-1326-SM-48TCG	GTEx Tissue Sample Gene Expression Profiles	1.0	2.29559
Amino acid metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.118
NUP210	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B8-4619-11A-01R-1758-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Middle midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.043
A388	DepMap CRISPR Gene Dependency	1.0	4.57879
FOSL2::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7407
CEBPB-26923725-CHIP-SEQ-MACROPHAGESS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Lateral cell cortex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.53
passive transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
Autosomal recessive nonsyndromic hearing loss	ClinVar Gene-Phenotype Associations 2025	1.0	null
HCC70	DepMap CRISPR Gene Dependency	1.0	2.53088
ATG3	Pathway Commons Protein-Protein Interactions	1.0	null
abnormality of the immune system	GWASdb SNP-Phenotype Associations	1.0	0.055504
GTEX-XPT6-2026-SM-4B64V	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11756
bone marrow	HPA Tissue Gene Expression Profiles	-1.0	-1.33208
Autosomal recessive nonsyndromic deafness 110	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.932
dorsolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.28874
Inferior olivary complex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.50871
GTEX-RVPU-0011-R9A-SM-3NM8E	GTEx Tissue Sample Gene Expression Profiles	1.0	1.15112
KLHL36	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0619
TIMM8A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.03
GTEX-QVUS-0011-R9A-SM-3GIJA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29968
Subthalamic nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04924
r7 part of parapyramidal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.49643
KRT9	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S33H-1126-SM-2XCB6	GTEx Tissue Sample Gene Expression Profiles	1.0	0.901962
PATU8902	DepMap CRISPR Gene Dependency	1.0	2.43609
abnormality of the abdominal organs	GWASdb SNP-Phenotype Associations	1.0	0.086484
496100584_HIP_probable Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.47923
ZCCHC11	Pathway Commons Protein-Protein Interactions	1.0	null
body wall	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.152208
Auditory cortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.644
GSE137702_2_v_1_selinexor_human	RummaGEO Drug Perturbation Signatures	-1.0	null
External plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.776
divalent inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1606
tcf3_21972416_linnegflt3poscd127posly6dneg_bone_marrow_lof_mouse_gpl1261_gse27402	GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations	1.0	0.055081
Utricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.56
496100574_HIP_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.15178
H2BC15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.07314
organelle part	GO Cellular Component Annotations 2015	1.0	null
SJSA1	CCLE Cell Line Gene Expression Profiles	1.0	1.58674
Branch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.615
PMC7064337-elife-51373-supp1.xlsx-MTF2_targets_shCTR-List_of_2011_genes_marked_by_MTF2_ChIPseq_in_control_conditions_shCTR_MTF2	Rummagene Transcription Factor Associations 2026	1.0	null
SG in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.01916
CAPZB	Pathway Commons Protein-Protein Interactions	1.0	null
TMEM18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2177
GTEX-SNOS-0526-SM-4DM54	GTEx Tissue Sample Gene Expression Profiles	1.0	1.02276
GTEX-REY6-0126-SM-48FDT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.68636
NCIH1568	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
r7 part of paragigantocellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.37666
layer 3 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14706
Recessive Sensorineural Hearing Loss	DisGeNET Gene-Disease Associations	1.0	null
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3148
GSE148692,GSE148695_2_v_0_satb2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Sarcoma_SARC_TCGA-DX-A6Z0-01A-13R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT3	Pathway Commons Protein-Protein Interactions	1.0	null
Sertoli cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.492
DAP3	Pathway Commons Protein-Protein Interactions	1.0	null
PATU8988S	CCLE Cell Line Gene Expression Profiles	-1.0	-1.81144
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CAL-39	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5094
ANAPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44408
RBM28	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TM-A84L-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
icSARS CoV_12Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.38324
SNU216	CCLE Cell Line Gene CNV Profiles	1.0	1.407
Msgn1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5203
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2M7-06A-11R-A18U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
external side of plasma membrane	GO Cellular Component Annotations 2015	1.0	null
Paraflocculus, granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22196
DSG1	Pathway Commons Protein-Protein Interactions	1.0	null
Deiters cell degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2938-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.143682
cochlear outer hair cell degeneration	MPO Gene-Phenotype Associations	1.0	null
GSE213650_3_v_1_everolimus_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-ENSEMBL_ID_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
PPIA	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S341-1326-SM-4AD72	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06712
abnormality of the endocrine system	GWASdb SNP-Phenotype Associations	1.0	0.087558
interpeduncular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	3.34509
JAK2_activemutant_72_GSE21842	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.82432
adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.073274
GSE133329_2_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A0YN-01A-21R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-5R-AA1D-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal otolith morphology	MPO Gene-Phenotype Associations	1.0	null
abnormality of blood and blood-forming tissues	GWASdb SNP-Phenotype Associations	1.0	0.086304
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.948
african	GeneRIF Biological Term Annotations	1.0	null
hematological neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.15614
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06337
SLC25A5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15692
HMCB	CCLE Cell Line Gene Expression Profiles	1.0	1.36135
NDUFA5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21691
Inner hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.008
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0304
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.62524
SQSTM1	Pathway Commons Protein-Protein Interactions	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2981-03B-01T-0748-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
YAPC	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831889
GTEX-R55C-1426-SM-48FED	GTEx Tissue Sample Gene Expression Profiles	1.0	1.37669
GSE119978,GSE180930_2_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
SUIT2	CCLE Cell Line Gene Expression Profiles	1.0	1.35429
loss	GeneRIF Biological Term Annotations	1.0	null
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.03372
TP53	ChEA Transcription Factor Targets	1.0	null
Nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
CLTC	Pathway Commons Protein-Protein Interactions	1.0	null
CAL-51	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HUNS1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37526
GTEX-QDVN-1026-SM-48TZA	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18002
LRRN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96718
NUP88	Pathway Commons Protein-Protein Interactions	1.0	null
GSE234340_9_v_2_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GNPTG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39128
In situ melanoma of skin_Epidermis_GSE4587	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.7011
posteroventral (inferior) parietal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.47309
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8317-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.756
Autosomal recessive nonsyndromic deafness 35	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.015
Autosomal dominant nonsyndromic deafness 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.707
PFN1	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPA3	Pathway Commons Protein-Protein Interactions	1.0	null
epithelial cell development	GO Biological Process Annotations 2015	1.0	null
MTARC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27882
KNS42	CCLE Cell Line Gene CNV Profiles	1.0	1.80736
Postsubiculum, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.02628
Cochlear duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.375
ATP5F1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03247
r7 part of rostral ventromedial reticular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.39808
abnormal organ of corti morphology	MPO Gene-Phenotype Associations	1.0	null
JNK_KO_GDS3001_531_mouse_liver	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
BCL2L2-PABPN1	Pathway Commons Protein-Protein Interactions	1.0	null
ChIP_PRDM14_21183938	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Female pudendum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.217
C18orf32	Pathway Commons Protein-Protein Interactions	1.0	null
amygdaloid complex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.35337
caused	GeneRIF Biological Term Annotations	1.0	null
m2 part of nucleus parabrachialis pigmentosus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.40298
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.141747
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.27
MAFF	ENCODE Transcription Factor Targets	1.0	null
CUL3	Pathway Commons Protein-Protein Interactions	1.0	null
NUF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40826
intermediate stratum of APal	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12713
PMC6683136-41598_2019_47363_MOESM4_ESM.xlsx-GENE_SET-Positive_correlation_of_ZEB1_and_other_genes_ZEB1	Rummagene Transcription Factor Associations 2026	1.0	null
toxic megacolon	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.07698
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98844
HSPA6	Pathway Commons Protein-Protein Interactions	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6618
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
NOP2	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-QDT8-0011-R4A-SM-32PKM	GTEx Tissue Sample Gene Expression Profiles	1.0	0.967185
GTEX-QCQG-0626-SM-48U21	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39327
GTEX-V955-1926-SM-4KL1L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.52477
EIF4EBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25659
connective tissue disease	GWASdb SNP-Disease Associations	1.0	0.110006
PMC10794847-mmc6.xlsx-PIAS1_KD_up-Table_S5_Genes_differentially_expressed_with_PIAS1_knockdown_in_keratinocytes_cultured_in_the_differentiation_condition_Related_to_Figure_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.95776
pancreas	HPA Tissue Gene Expression Profiles	-1.0	-1.33208
arteriosclerosis	GWASdb SNP-Phenotype Associations	1.0	0.25982
C2BBE1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.07934
CKAP4	Pathway Commons Protein-Protein Interactions	1.0	null
PABPC1	Pathway Commons Protein-Protein Interactions	1.0	null
primary auditory cortex (core)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.65496
Joubert syndrome 23	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.485
H3K9ac_A549_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-RB-A7B8-01A-12R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Marshall syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.045
Basolateral amygdalar nucleus, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34643
GTEX-XYKS-1526-SM-4BRUP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11157
RFC2	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A85H-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-BT-A2LA-11A-11R-A18C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE148695,GSE167281_2_v_1_satb2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-R55E-0011-R8A-SM-2TC66	GTEx Tissue Sample Gene Expression Profiles	1.0	0.927586
GTEX-T2IS-0011-R6A-SM-32QP2	GTEx Tissue Sample Gene Expression Profiles	1.0	0.944611
GTEX-XMD1-0011-R10A-SM-4AT4A	GTEx Tissue Sample Gene Expression Profiles	1.0	0.830932
TCF21-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE111247_2_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MFM-223	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE84922,GSE84924_0_v_1_sall4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
NAP1L1	Pathway Commons Protein-Protein Interactions	1.0	null
primary auditory cortex (core)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.41513
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2042
RPL15	Pathway Commons Protein-Protein Interactions	1.0	null
GSE125219,GSE125221_3_v_0_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
Rootlet	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.255
Nucleus y	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1694
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05393
HNRNPM	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S7SF-1426-SM-4AT5A	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06722
Retrosplenial area, ventral part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.59109
abnormal reflex	MPO Gene-Phenotype Associations	1.0	null
GTEX-UJHI-0826-SM-4IHLM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.15153
Presynaptic cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.556
PMC10515843-media-1.xlsx-Table_7_Diff_loop_genes_E_v_S-Supplementary_Table_7_Genes_that_involve_significant_differential_looping_in_pediatric_primary_B_cell_CTCF_peaks_compared_to_GM12878_CTCF_peaks_CTCF	Rummagene Transcription Factor Associations 2026	1.0	null
POLR2A	ENCODE Transcription Factor Targets	1.0	null
SSX2IP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75748
RCC-ER	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7611-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU81	DepMap CRISPR Gene Dependency	1.0	4.77911
Autosomal dominant nonsyndromic deafness 15	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.956
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z6-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KYSE270	CCLE Cell Line Gene Expression Profiles	-1.0	-1.71093
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8785
REST	ChEA Transcription Factor Targets	1.0	null
Autosomal recessive nonsyndromic deafness 103	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.048
large	GeneRIF Biological Term Annotations	1.0	null
Lung adenocarcinoma_LUAD_TCGA-95-A4VK-01A-11R-A262-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-NA-A4R1-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A6W2-01A-21R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RNPC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02499
IALM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39627
Upper tip-link density	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.294
HLFA	CCLE Cell Line Gene Expression Profiles	-1.0	-2.74955
inner CP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07149
TP53-23651856-MEFS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
stratum lacunosum-moleculare of caudal CA1	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.16788
GUCY2F	Pathway Commons Protein-Protein Interactions	1.0	null
adult stem cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.042717
RPP14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.72106
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LA-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT24	Pathway Commons Protein-Protein Interactions	1.0	null
Taenia tecta, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30695
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9535
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.3691
microvillus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.405971
cancer	GWASdb SNP-Disease Associations	1.0	0.101114
Primary somatosensory area, mouth, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26489
GTEX-X4XY-1726-SM-46MVO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.54574
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.227
GTEX-U8XE-0726-SM-3DB8O	GTEx Tissue Sample Gene Expression Profiles	1.0	0.965104
STRAP	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-ZF-AA4X-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mantle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.959
HSPA5	Pathway Commons Protein-Protein Interactions	1.0	null
india	GeneRIF Biological Term Annotations	1.0	null
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046756
GTEX-R3RS-1326-SM-48FE7	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17371
SG in dysgranular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.4532
HIST1H2BL	Pathway Commons Protein-Protein Interactions	1.0	null
OCIM2	DepMap CRISPR Gene Dependency	1.0	3.07295
medial (main) part of Med	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35619
Blood	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.067
Night blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.357
Connexin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.214
Nodulus (X)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01318
SMARCA4	ChEA Transcription Factor Targets	1.0	null
response to stimulus	GO Biological Process Annotations 2015	1.0	null
abnormal head movements	MPO Gene-Phenotype Associations	1.0	null
abnormal stria vascularis morphology	MGI Mouse Phenotype Associations 2023	1.0	null
OST4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42239
ATG7	Pathway Commons Protein-Protein Interactions	1.0	null
HSP90AA2	Pathway Commons Protein-Protein Interactions	1.0	null
HEP3B217	CCLE Cell Line Gene CNV Profiles	-1.0	-1.73389
RANBP6	Pathway Commons Protein-Protein Interactions	1.0	null
JUND-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.047
NBR1	Pathway Commons Protein-Protein Interactions	1.0	null
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7361
Nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.623
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14211
NEK9	Pathway Commons Protein-Protein Interactions	1.0	null
GSE112761,GSE112767_1_v_5_ddx6_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TFAP2C-20629094-MCF7-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
vascular disease	GWASdb SNP-Disease Associations	1.0	0.144459
r1 part of vestibular sensory column	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07273
GSE234340_3_v_2_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
W chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.616
Meniere's disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.859
ELK1::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5092
superficial mantle of isBM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.17754
layer II of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.6622
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
KHSRP	Pathway Commons Protein-Protein Interactions	1.0	null
hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.03375
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0124
NFE2L2	ChEA Transcription Factor Targets	1.0	null
arteriosclerotic cardiovascular disease	GWASdb SNP-Disease Associations	1.0	0.441867
PMC6113333-41598_2018_31192_MOESM11_ESM.xlsx-Sheet1-H1_NFIC_NFIC	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-U3ZM-1626-SM-4DXSK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.34132
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5727
FOSB::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9369
mediodorsal nucleus of thalamus_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.838946
GSE131425_2_v_0_arg2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Synaptic ribbon	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.619
GTEX-RWS6-0826-SM-47JXF	GTEx Tissue Sample Gene Expression Profiles	1.0	2.57143
absent pinna reflex	MPO Gene-Phenotype Associations	1.0	null
Lef1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.0768
Fundus dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
NCAPD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38134
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1675
GTF3C3	Pathway Commons Protein-Protein Interactions	1.0	null
Anterior cingulate area, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04673
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6678
Spinal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.179
detection of stimulus	GO Biological Process Annotations 2015	1.0	null
GTEX-XXEK-0326-SM-4BRVV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13578
Auditory system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Midbrain	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.835
GTEX-T8EM-0126-SM-4DM5R	GTEx Tissue Sample Gene Expression Profiles	1.0	0.970864
integral component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.406555
LOVO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PACS1	Pathway Commons Protein-Protein Interactions	1.0	null
ZDHHC13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20901
SOX2_Deficiency_GDS4853_320_human_AZ-521 gastric cancer (GC) cell line - 12 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.8574
Actin filament	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.647
periventricular stratum of Str	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15338
UBA52	Pathway Commons Protein-Protein Interactions	1.0	null
SETDB1	ChEA Transcription Factor Targets	1.0	null
GSE94814_1_v_0_reck_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE232631_5_v_1_brca2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
POLR2A_K562_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Magnocellular reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.06487
GTEX-SNMC-0526-SM-4DM69	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08674
SOX2_Deficiency_GDS4853_319_human_AZ-521 gastric cancer (GC) cell line - 8 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ILF3	Pathway Commons Protein-Protein Interactions	1.0	null
FOXA1-27270436-CHIP-SEQ-PROSTATE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NAP1L4	Pathway Commons Protein-Protein Interactions	1.0	null
HSPA1L	Pathway Commons Protein-Protein Interactions	1.0	null
LB996-RCC	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5962
RAE1	Pathway Commons Protein-Protein Interactions	1.0	null
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4417
Cortical cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.899
GTEX-T5JC-0011-R9A-SM-32PLV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14158
abnormal sensory ganglion morphology	MPO Gene-Phenotype Associations	1.0	null
BACH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.11069
NCI-H378	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC8212786-DataSheet_4.xlsx-CESC-ZBED3_ZBED3	Rummagene Transcription Factor Associations 2026	1.0	null
ethnically	GeneRIF Biological Term Annotations	1.0	null
SOX2_Deficiency_GDS4853_321_human_AZ-521 gastric cancer (GC) cell line - 18 Hours	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Autosomal dominant nonsyndromic deafness 18	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
CCT3	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-XPT6-1626-SM-4B655	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23662
SRSF5	Pathway Commons Protein-Protein Interactions	1.0	null
AR-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
Enlarged vestibular aqueduct	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.384
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7386
Ezh2_Deficiency_GDS4309_364_mouse_Hearts	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A4NF-01A-11R-A27V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-P4PP-0626-SM-3NM9X	GTEx Tissue Sample Gene Expression Profiles	1.0	2.1292
Leydig cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.473
GSE197197,GSE212981_1_v_0_carm1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
pontine nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.36512
SOX17	JASPAR Predicted Transcription Factor Targets	1.0	null
hsa-miR-636	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
epithelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065332
IZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.07736
MYB-26560356-CHIP-SEQ-TH2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE234340_10_v_2_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05731
ALB	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-VUSG-1226-SM-4KKZF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.55309
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GSE239844_8_v_0_crizotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MDH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65275
Anteromedial visual area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28657
atherosclerosis	GWASdb SNP-Disease Associations	1.0	0.692747
prostate_4c	HPA Tissue Sample Gene Expression Profiles	1.0	0.883194
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-196-ZNF658_ZNF658	Rummagene Transcription Factor Associations 2026	1.0	null
STAT3-24763339-IMN-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
TMC	InterPro Predicted Protein Domain Annotations	1.0	null
Colon - Transverse	GTEx Tissue Gene Expression Profiles 2023	1.0	2.41192
PANX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75807
Liver hepatocellular carcinoma_LIHC_TCGA-ZS-A9CF-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
U2OS	CCLE Cell Line Gene Expression Profiles	-1.0	-2.95434
MITF	ChEA Transcription Factor Targets	1.0	null
iran	GeneRIF Biological Term Annotations	1.0	null
Inner ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.963
periventricular stratum of r4Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31725
bone marrow cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Ski complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.049
GTEX-T6MN-0011-R5A-SM-32QPD	GTEx Tissue Sample Gene Expression Profiles	1.0	0.862763
IMPDH2	Pathway Commons Protein-Protein Interactions	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LI-01A-11R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.07885
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.245
KRT80	Pathway Commons Protein-Protein Interactions	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7457
organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
NUDT1	Pathway Commons Protein-Protein Interactions	1.0	null
TFG	Pathway Commons Protein-Protein Interactions	1.0	null
BRCA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24036
CDC5L	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S341-0526-SM-4AD5U	GTEx Tissue Sample Gene Expression Profiles	1.0	1.2295
RPL30	Pathway Commons Protein-Protein Interactions	1.0	null
Perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.275
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30096
GSE218060_7_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
exon	GeneRIF Biological Term Annotations	1.0	null
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0794
GTEX-XMK1-0926-SM-4B66X	GTEx Tissue Sample Gene Expression Profiles	1.0	0.936491
GSE155162,GSE155169_1_v_0_buparlisib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
posteroventral (inferior) parietal cortex_21 yrs_F_13057	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.10919
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-2.31111
RPL27	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-U3ZM-0526-SM-4DXTB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.84893
abnormal cranial ganglia morphology	MPO Gene-Phenotype Associations	1.0	null
Accessory outer segment	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.083
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.274835
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.703
Field CA2, stratum lacunosum-moleculare	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.40111
RPS7	Pathway Commons Protein-Protein Interactions	1.0	null
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3516
abnormal nervous system morphology	MPO Gene-Phenotype Associations	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
NURR1	MotifMap Predicted Transcription Factor Targets	1.0	null
DBN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.07748
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
intracellular part	GO Cellular Component Annotations 2015	1.0	null
Hnf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.4115
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23083
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	1.07254
SMAD4-21741376-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
KRT33B	Pathway Commons Protein-Protein Interactions	1.0	null
TGM3	Pathway Commons Protein-Protein Interactions	1.0	null
inorganic ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
site	GeneRIF Biological Term Annotations	1.0	null
KON	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC8881251-18_2022_4183_MOESM2_ESM.xlsx-ERM_vs_P1-DEGs_ERM_versus_P1_organoids_ETV5	Rummagene Transcription Factor Associations 2026	1.0	null
EPS15L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11606
RBM34	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B0-5712-01A-11R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pendred Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.538
mantle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.314046
A3KAW	CCLE Cell Line Gene Expression Profiles	1.0	1.62704
gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048433
HNF4A	ChEA Transcription Factor Targets	1.0	null
icSARS CoV_24Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.34175
rostral ventrolateral reticular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62135
Primary somatosensory area, unassigned, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08644
abnormal hearing physiology	MGI Mouse Phenotype Associations 2023	1.0	null
TCF3/E2A-22897851-JUKARTE6-1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PMC9643473-Table1.xls-MAF_0_005-Gene_refGeneWithVer_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
BEND3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.58923
Lung squamous cell carcinoma_LUSC_TCGA-85-7844-01A-11R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE112860_5_v_7_prdm16_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Primary somatosensory area, mouth, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12407
GlobusPallidus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.859095
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A63U-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.29626
Oliva	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.848
Y-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.197
NCIH2085	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48162
Ellis-Van Creveld syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.202
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
XRCC5	Pathway Commons Protein-Protein Interactions	1.0	null
principal sensory nucleus of trigeminal nerve	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.13737
GTEX-TML8-1526-SM-4DXUX	GTEx Tissue Sample Gene Expression Profiles	1.0	2.69866
GSE121866_0_v_2_six4_human	RummaGEO Gene Perturbation Signatures	1.0	null
brain	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Nucleus of the lateral lemniscus, horizontal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20372
single-organism localization	GO Biological Process Annotations 2015	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2906
adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.085618
superficial stratum of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01198
autosomal recessive inheritance	HPO Gene-Disease Associations	1.0	null
MZ in midcingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.940654
FAM32A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42092
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of the ear	HPO Gene-Disease Associations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CZ-5985-11A-01R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TRA2A	Pathway Commons Protein-Protein Interactions	1.0	null
Hearing Loss	HuGE Navigator Gene-Phenotype Associations	1.0	null
lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.110509
r10 part of the inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.29517
PHF8	ENCODE Transcription Factor Targets	1.0	null
U266B1	CCLE Cell Line Gene Expression Profiles	1.0	1.58415
Middle ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.09
GTEX-OXRN-1726-SM-3NM9B	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21189
mammalian phenotype	MPO Gene-Phenotype Associations	1.0	null
GTEX-U3ZH-1526-SM-4DXV1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06659
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-gene_id_y_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9344
GSE124410_6_v_4_stk40_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HNRNPUL1	Pathway Commons Protein-Protein Interactions	1.0	null
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2868
Kidney Chromophobe_KICH_TCGA-KL-8329-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Creb5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.3042
Gap junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.638
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.416
estradiol_mus musculus_gpl4134_gse23241	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Primary somatosensory area, unassigned, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34344
SNRPE	Pathway Commons Protein-Protein Interactions	1.0	null
Retrosplenial area, ventral part, layer 5	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.26409
253J	DepMap CRISPR Gene Dependency	1.0	3.66902
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3763
BICR18	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53066
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
PMC7435699-mmc5.xls-Gene_lists-MITF_ChIP_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-OOBJ-2126-SM-3NB1N	GTEx Tissue Sample Gene Expression Profiles	1.0	1.36171
HSPA4	Pathway Commons Protein-Protein Interactions	1.0	null
GSE213410_2_v_3_calcitriol_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE196117_1_v_8_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Fibrochondrogenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.123
primary motor-sensory cortex (samples)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.03631
Bladder Urothelial Carcinoma_BLCA_TCGA-GV-A3QK-01B-11R-A23N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
abnormal ear physiology	MPO Gene-Phenotype Associations	1.0	null
COPS5	Pathway Commons Protein-Protein Interactions	1.0	null
GSE217363_5_v_1_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
stereocilium bundle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.8245
SMARCB1	Pathway Commons Protein-Protein Interactions	1.0	null
SRSF1	Pathway Commons Protein-Protein Interactions	1.0	null
NCI-H820	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14129
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.134
HIPK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00212
Primary somatosensory area, lower limb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.20372
HCC1011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963473
outer SZ in posterior parahippocampal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.40407
PMC11839186-CPR-58-e13756-s004.pdf-71-THAP3_THAP3	Rummagene Transcription Factor Associations 2026	1.0	null
Adrenocortical carcinoma_ACC_TCGA-P6-A5OG-01A-22R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT75	Pathway Commons Protein-Protein Interactions	1.0	null
MORC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2483
MAP1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39267
impaired hearing	MPO Gene-Phenotype Associations	1.0	null
SNRPB	Pathway Commons Protein-Protein Interactions	1.0	null
atherosclerosis	GWASdb SNP-Phenotype Associations	1.0	0.294858
Optic nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.056
NCI-H146	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table7_gnomAD_AMR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
medial subhabenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.72022
FOXS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0535
GSE206093,GSE206094_1_v_3_isl1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PDIA6	Pathway Commons Protein-Protein Interactions	1.0	null
vestibular reflex	GO Biological Process Annotations 2025	1.0	null
UBE2C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33165
vestibular reflex	GO Biological Process Annotations 2015	1.0	null
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.88028
HSPA7	Pathway Commons Protein-Protein Interactions	1.0	null
superficial layers of caudal presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.58421
LARP6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45171
anteroventral nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.28215
DDX17	Pathway Commons Protein-Protein Interactions	1.0	null
ARHGDIB_Transfection_GDS4455_551_human_UM-UC-3 bladder carcinoma cells	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
RPL21	Pathway Commons Protein-Protein Interactions	1.0	null
anatomical structure development	GO Biological Process Annotations 2015	1.0	null
intermediate stratum of r7BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30744
PPP1CC	Pathway Commons Protein-Protein Interactions	1.0	null
icSARS CoV_30Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.38637
PYGL	Pathway Commons Protein-Protein Interactions	1.0	null
pyramidal layer of caudal subiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.03251
GTEX-S4UY-0526-SM-3K2AN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4683
Endolymphatic hydrops	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.913
RPS11	Pathway Commons Protein-Protein Interactions	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6H5-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cell cortex region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.548
Vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.183
GTEX-RM2N-0726-SM-48FD5	GTEx Tissue Sample Gene Expression Profiles	1.0	1.35974
Satellite glial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
GSE233049_2_v_0_atf3_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE48812_9_v_5_sulforaphane_human	RummaGEO Drug Perturbation Signatures	1.0	null
Unconventional myosin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.808
Brain Lower Grade Glioma_LGG_TCGA-DB-A4XC-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE113817_2_v_1_bach1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A7IP-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NEU3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52088
nucleus of the stria terminalis, medial division, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.51229
GTEX-UPIC-1026-SM-4IHLT	GTEx Tissue Sample Gene Expression Profiles	1.0	2.53647
abnormality of the vertebral column	GWASdb SNP-Phenotype Associations	1.0	0.717572
RPL6	Pathway Commons Protein-Protein Interactions	1.0	null
actin-based cell projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
colonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.142712
GTEX-UTHO-2726-SM-4JBH9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.01737
Autosomal dominant nonsyndromic deafness 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.946
Brain Lower Grade Glioma_LGG_TCGA-DB-5276-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intracellular part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PMC10243915-uxad037_suppl_supplementary_table_s1a.pdf-526-POU2F1_POU2F1	Rummagene Transcription Factor Associations 2026	1.0	null
Deafness, Autosomal Recessive 7	CTD Gene-Disease Associations	1.0	2.88009
ACTBL2	Pathway Commons Protein-Protein Interactions	1.0	null
hsa-miR-3169	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
PMC3419980-leu201249x2.xls-RUNX1-ETO_siRE_ChIPSeq_peaks_ge-gene_name_RUNX1	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-520h	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
YWHAE	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal dominant nonsyndromic deafness 16	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.402
habenula (old epithalamus)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.00974
WDR62	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34788
NUGC2	CCLE Cell Line Gene CNV Profiles	1.0	1.41525
NUGC4	CCLE Cell Line Gene CNV Profiles	1.0	2.28623
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5890-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.096
ventral part of PHyB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22477
intracellular	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
abnormality of the middle ear	HPO Gene-Disease Associations	1.0	null
GSE158320,GSE183351_2_v_1_lin28b_human	RummaGEO Gene Perturbation Signatures	1.0	null
ATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0517
boundaries	GeneRIF Biological Term Annotations	1.0	null
GSE216043_11_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
cochlear inner hair cell degeneration	MPO Gene-Phenotype Associations	1.0	null
GTEX-RVPV-0526-SM-47JYL	GTEx Tissue Sample Gene Expression Profiles	1.0	0.92671
monoatomic cation channel activity	GO Molecular Function Annotations 2025	1.0	null
r9 part of the inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.94616
SUM102PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.75476
SNRNP27	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-QDT8-0011-R1A-SM-32PKS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.930707
Lipoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.232
GSE111247_14_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8423434-mmc7.xlsx-SOX2_HENSM-Genes_n_2733_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal gait	MPO Gene-Phenotype Associations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-HM-A6W2-06A-22R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
layer 1 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.23327
superficial stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75573
PTBP1	Pathway Commons Protein-Protein Interactions	1.0	null
Vestibular sensory epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.987
Central linear nucleus raphe	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.33023
GSE230263,GSE230265_3_v_1_runx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNRNPR	Pathway Commons Protein-Protein Interactions	1.0	null
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.303
PMC7889611-41467_2021_21346_MOESM10_ESM.xlsx-High_TSA_score_correlations-Supplementary_Data_6_Genes_with_expression_that_positively_correlate_with_a_high_TSA_score_in_AIRE_and_corneocyte-like_mTECs_AIRE	Rummagene Transcription Factor Associations 2026	1.0	null
TNRC6B	Pathway Commons Protein-Protein Interactions	1.0	null
MIER2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.94109
EIF2B5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.42913
Lung squamous cell carcinoma_LUSC_TCGA-18-3416-01A-01R-0980-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Primary somatosensory area, nose, layer 6a	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08964
GTEX-U3ZN-1726-SM-4DXUQ	GTEx Tissue Sample Gene Expression Profiles	1.0	2.2228
GTEX-OHPN-0011-R2A-SM-2I5FB	GTEx Tissue Sample Gene Expression Profiles	1.0	0.831441
CLK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36637
H1FX	Pathway Commons Protein-Protein Interactions	1.0	null
GSE137144_2_v_0_nlrp3_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KP-1N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
least	GeneRIF Biological Term Annotations	1.0	null
VZ in hypothalamic portion	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.35318
Acute Myeloid Leukemia_LAML_TCGA-AB-2851-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Saccule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.923
GTEX-S95S-1126-SM-4B64E	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18388
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.066254
chemdependency	GAD High Level Gene-Disease Associations	1.0	0.293278
ZCCHC17	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22928
ZNF628	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5306
NFKB1	Pathway Commons Protein-Protein Interactions	1.0	null
NOP53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.5078
intermediate stratum of r1Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.03814
NFIB-24661679-E16.5 LUNG-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-7351-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC9084694-RMB2-21-e12464-s005.xlsx-GV_MI_MII_GV-up-GeneName_MITF	Rummagene Transcription Factor Associations 2026	1.0	null
PATU8988S	CCLE Cell Line Gene CNV Profiles	-1.0	-1.85682
HIST1H2AB	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S7SF-2026-SM-3K2AS	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16068
genetic	GeneRIF Biological Term Annotations	1.0	null
GTEX-T6MO-0526-SM-4DM6R	GTEx Tissue Sample Gene Expression Profiles	1.0	2.0446
CTCF_skin fibroblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Stereocilium bundle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.385
GTEX-QVUS-0626-SM-447CC	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23091
U2AF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91895
RBBP5_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.655024
CEBPB-26923725-CHIP-SEQ-HEMOGENIC-ENDOTHELIUM-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-NFK9-2226-SM-3MJGP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.970405
Brain Lower Grade Glioma_LGG_TCGA-S9-A6WN-01A-12R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Usher syndrome type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.685
GSE167474_1_v_3_naa40_human	RummaGEO Gene Perturbation Signatures	-1.0	null
hair-cell stereocilium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.814
Autosomal recessive nonsyndromic deafness 49	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.315
Brain Lower Grade Glioma_LGG_TCGA-HW-A5KL-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.831889
medial habenular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.31179
individuals	GeneRIF Biological Term Annotations	1.0	null
CCDC124	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73342
SF3B5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13223
Autosomal dominant nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.425
esophageal cancer	GWASdb SNP-Disease Associations	1.0	1.31297
NCI-H1648	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HT1197	CCLE Cell Line Gene Expression Profiles	1.0	1.37736
response to external stimulus	GO Biological Process Annotations 2015	1.0	null
epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.058057
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.9305
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5112
phenotypic abnormality	GWASdb SNP-Phenotype Associations	1.0	0.434117
EEF1G	Pathway Commons Protein-Protein Interactions	1.0	null
CDK7_knockdown_138_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.89858
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5894-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_kidney_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-XQ3S-2726-SM-4BOP2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.22659
GTEX-V1D1-2126-SM-4JBH4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21232
AAK1	Pathway Commons Protein-Protein Interactions	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Foxf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.2076
BIRC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08462
DMRTB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06582
posteroventral (inferior) parietal cortex_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.825586
PMC8987207-DataSheet_1.xls-TF_targets_Fig_2A-E2A_Pre-Pro-B-Cells_ChIP-seq_TCF3	Rummagene Transcription Factor Associations 2026	1.0	null
cardiovascular system disease	GWASdb SNP-Disease Associations	1.0	0.101688
A427	COSMIC Cell Line Gene Mutation Profiles	1.0	null
calcium channel activity	GO Molecular Function Annotations 2015	1.0	null
FOXA1-25329375-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Sensory Perception	Reactome Pathways 2024	1.0	null
GTEX-VJYA-1426-SM-4KL1Y	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21735
vestibular saccular macula degeneration	MPO Gene-Phenotype Associations	1.0	null
Cochlear hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.212
RRP1	Pathway Commons Protein-Protein Interactions	1.0	null
layer 6 of PrS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01436
Otosclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.478
Vestibulocochlear nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.703
Autosomal recessive nonsyndromic deafness 32	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
inferior olive, dorsal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-2.34735
transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
integument phenotype	MPO Gene-Phenotype Associations	1.0	null
Paragigantocellular reticular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08212
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.941636
megacolon	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.248203
fasciola cinerea	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.068
MAP1B	Pathway Commons Protein-Protein Interactions	1.0	null
Neuron projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
causing	GeneRIF Biological Term Annotations	1.0	null
Stolon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.654
NOC3L	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPU	Pathway Commons Protein-Protein Interactions	1.0	null
S100A9	Pathway Commons Protein-Protein Interactions	1.0	null
deafness-dystonia-optic neuronopathy syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
Stickler syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.267
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3L_Peaks_2SA-YAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-33-4583-01A-01R-1443-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of PaS (cortical plate/marginal zone)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08158
DAZAP1	Pathway Commons Protein-Protein Interactions	1.0	null
Taste bud	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.983
single-multicellular organism process	GO Biological Process Annotations 2015	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
Sensory system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Sarcoma_SARC_TCGA-DX-A6BG-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal dominant nonsyndromic deafness 36	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.796
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.364
DAOY	CCLE Cell Line Gene Expression Profiles	1.0	1.41405
side of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.007697
parathyroid gland	HPA Tissue Protein Expression Profiles	1.0	1.07254
8505C	DepMap CRISPR Gene Dependency	1.0	2.13922
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6134-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA1-33576154-HUMAN-LUNG-PROSTATECANCER	ChEA Transcription Factor Targets 2022	1.0	null
overnutrition	GWASdb SNP-Disease Associations	1.0	0.470165
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.19601
Sensory processing of sound by outer hair cells of the cochlea	Reactome Pathways 2024	1.0	null
r7 part of the posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.68532
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_14_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
BHT101	CCLE Cell Line Gene Expression Profiles	-1.0	-1.77257
EZH2_skeletal muscle myoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
head	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
cochlear inner hair cell degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
intermediate stratum of CbH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.12014
Lung squamous cell carcinoma_LUSC_TCGA-56-8305-01A-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
caudal ganglionic eminence_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.36393
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.005
Orbital area, lateral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13196
CKB	Pathway Commons Protein-Protein Interactions	1.0	null
PMC12245139-Supplementary_material-Suppl.2-s2.xlsx-Table_S4_AR_transmission-Unnamed_4_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Digenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.349
Autosomal dominant nonsyndromic deafness 13	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.581
TUFM	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal cochlear sensory epithelium morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal neuron physiology	MPO Gene-Phenotype Associations	1.0	null
IGSF8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27814
HSP90B1	Pathway Commons Protein-Protein Interactions	1.0	null
MYBBP1A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE193258,GSE193259_5_v_14_osimertinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Cell cortex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.833
GTEX-N7MS-0126-SM-3TW8O	GTEx Tissue Sample Gene Expression Profiles	1.0	1.5327
Pyramus (VIII)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.60031
cerebellar cortex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.31124
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.9705
isthmic basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.52477
inner SZ in medial temporal-occipital cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.08303
bone marrow	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.23362
Usher syndrome type 3B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.106
PMC11385078-jciinsight-9-172336-s272.xlsx-1DEseq2_Report_AA_BL_vs_EA_BL-Unnamed_1_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3X2-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE119978,GSE180930_3_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-QH-A870-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Stomach Smooth Muscle	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	1.37873
Brain - Cortex	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.589086
abnormal behavior	MPO Gene-Phenotype Associations	1.0	null
HNRNPA2B1	Pathway Commons Protein-Protein Interactions	1.0	null
PRPF38B	Pathway Commons Protein-Protein Interactions	1.0	null
arterial stenosis	GWASdb SNP-Phenotype Associations	1.0	0.23333
disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
PMC12774775-mmc2.xlsx-PAR_RARG_merge_q5_Narrow_subKO-Gene_Symbol_RARG	Rummagene Transcription Factor Associations 2026	1.0	null
GSE210662_2_v_1_znf165_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2182
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.332
deafness, autosomal dominant 36	OMIM Gene-Disease Associations	1.0	null
divalent inorganic cation transport	GO Biological Process Annotations 2015	1.0	null
Declive (VI), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.10323
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table6_gnomAD_EUR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-XBEW-1326-SM-4AT63	GTEx Tissue Sample Gene Expression Profiles	1.0	1.82897
CAL 27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02774
NCIH1373	DepMap CRISPR Gene Dependency	1.0	2.78875
endocrine gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Inferior colliculus, dorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.4651
Bone development disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.47817
cd8.Tcell	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.881601
dna	GeneRIF Biological Term Annotations	1.0	null
description	GeneRIF Biological Term Annotations	1.0	null
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	98.727
SU.86.86	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03502
NFYA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.8806
GIGYF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45557
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.738
Vestibular hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.001
Lung adenocarcinoma_LUAD_TCGA-78-7536-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mechanosensitive monoatomic ion channel activity	GO Molecular Function Annotations 2025	1.0	null
Myosin III complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.747
SP in caudal perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.7111
r5 part of posteroventral cochlear nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04274
TSR3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03502
AGL	Pathway Commons Protein-Protein Interactions	1.0	null
increased body weight	GWASdb SNP-Phenotype Associations	1.0	0.847125
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91683
HNRNPH3	Pathway Commons Protein-Protein Interactions	1.0	null
GER cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.75
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.1149
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3449
MAFK_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
TUBA1C	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal vestibular saccular macula morphology	MPO Gene-Phenotype Associations	1.0	null
GTEX-U3ZN-1226-SM-4DXUD	GTEx Tissue Sample Gene Expression Profiles	1.0	2.09754
RKO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NMCG1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.33367
GTEX-XV7Q-1126-SM-4BRVS	GTEx Tissue Sample Gene Expression Profiles	1.0	1.53741
PDIA3	Pathway Commons Protein-Protein Interactions	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N6-A4VF-01A-31R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ARSI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23145
abnormality of the coronary arteries	GWASdb SNP-Phenotype Associations	1.0	0.294858
monoatomic ion gated channel activity	GO Molecular Function Annotations 2023	1.0	null
HSPA4L	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7440-11A-01R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GATA2-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GTEX-WFG8-1826-SM-4LVM4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.10859
Vestibular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.388
GTEX-RM2N-1326-SM-48FCW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.50489
Progressive Sensorineural Hearing Impairment	DisGeNET Gene-Disease Associations	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-XN-A8T5-01A-12R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
organ of Corti degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8638-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Posterior midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
GTEX-T6MN-2026-SM-4DM7L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.79585
HSP90AA1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE234043_3_v_1_abcb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-421_ChIP-Seq_H3K9me1_2_AR_differential_expression_upon_KDM3A_or_AR_knockdown_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-R53T-1126-SM-48FD4	GTEx Tissue Sample Gene Expression Profiles	1.0	2.06282
KRT16	Pathway Commons Protein-Protein Interactions	1.0	null
Superior central nucleus raphe, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47173
GSE184087_4_v_5_tert_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Cerebellar nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.39055
SYNCRIP	Pathway Commons Protein-Protein Interactions	1.0	null
CEBPD-21427703-3T3-L1-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-6690-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPL35A	Pathway Commons Protein-Protein Interactions	1.0	null
K2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-P4PQ-0626-SM-3NMCU	GTEx Tissue Sample Gene Expression Profiles	1.0	1.4921
detection of mechanical stimulus involved in sensory perception	GO Biological Process Annotations 2023	1.0	null
SG in posterior frontal cortex (motor cortex)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.20577
abnormal ear morphology	MPO Gene-Phenotype Associations	1.0	null
IGR39	CCLE Cell Line Gene CNV Profiles	1.0	1.70227
NFIB-24661679-LUNG-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
abnormal vestibular labyrinth morphology	MPO Gene-Phenotype Associations	1.0	null
superficial stratum of r3BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14862
SERPINH1	Pathway Commons Protein-Protein Interactions	1.0	null
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2734
intermediate stratum of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11624
Perturb_3664_KD_RBM27_SRP243927	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
DPF2	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPA0	Pathway Commons Protein-Protein Interactions	1.0	null
ADIPOR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.71149
Prostate-club cell of prostate epithelium	Tabula Sapiens Gene-Cell Associations	1.0	5.73226
Disease of anatomical entity	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
Lingula (I), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3803
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.379
GTEX-VJYA-1326-SM-3GIJC	GTEx Tissue Sample Gene Expression Profiles	1.0	0.832338
RUNX1-30185409-HPC-MOUSE-BONEMARROW-LEUKEMIA	ChEA Transcription Factor Targets 2022	1.0	null
all	GeneRIF Biological Term Annotations	1.0	null
Auditory vesicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.393
GSTP1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-WHSE-0011-R4A-SM-3P5ZN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.25586
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
hsa-miR-1909	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
detection of mechanical stimulus involved in sensory perception of sound	GO Biological Process Annotations 2015	1.0	null
GTEX-UPIC-1126-SM-4IHLO	GTEx Tissue Sample Gene Expression Profiles	1.0	1.07368
Deafness	DisGeNET Gene-Disease Associations	1.0	null
HNRNPH2	Pathway Commons Protein-Protein Interactions	1.0	null
VMRC-LCD	COSMIC Cell Line Gene Mutation Profiles	1.0	null
consanguineous	GeneRIF Biological Term Annotations	1.0	null
detection of abiotic stimulus	GO Biological Process Annotations 2015	1.0	null
Autosomal dominant nonsyndromic deafness 78	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.835
layer III of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.54648
DSG4	Pathway Commons Protein-Protein Interactions	1.0	null
GSE234340_1_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
ANAPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13218
monocyte chemoattractant protein 1 (66-77) [Supplementary Concept]	dbGAP Gene-Trait Associations	1.0	0.143435
superficial stratum of r1BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37672
Waardenburg syndrome type 2A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
MTPN	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-RN64-1026-SM-48FDX	GTEx Tissue Sample Gene Expression Profiles	1.0	0.959799
Sarcoma_SARC_TCGA-JV-A5VE-01A-11R-A29R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Arid3b	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.4081
Usher syndrome type 1J	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.796
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-6030-11A-01R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PRKDC	Pathway Commons Protein-Protein Interactions	1.0	null
FUBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57992
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.3666
SRSF10	Pathway Commons Protein-Protein Interactions	1.0	null
GSE178714_1_v_2_smad2_human	RummaGEO Gene Perturbation Signatures	1.0	null
KRT77	Pathway Commons Protein-Protein Interactions	1.0	null
DLL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.09572
Sarcoma_SARC_TCGA-MB-A8JK-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
intermediate (interpositus) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01912
GTEX-WOFM-1326-SM-3MJFR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.34598
neurodegeneration	MPO Gene-Phenotype Associations	1.0	null
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.215
primary auditory cortex (core)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08817
PMC12775252-18_2025_5991_MOESM3_ESM.xlsx-Sheet1-Supplementary_Table_2_Up-_and_down-regulated_genes_in_TCF7L2-depleted_EVT_compared_to_control_EVT_TCF7L2	Rummagene Transcription Factor Associations 2026	1.0	null
HSD17B10	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-92-8063-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Waardenburg syndrome type 4A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.255
white matter of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.35027
central amygdaloid nucleus, medial part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12813
east	GeneRIF Biological Term Annotations	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.0246
GAMG	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MCM7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05066
hsa-miR-3680	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
SNU685	CCLE Cell Line Gene CNV Profiles	-1.0	-1.89073
megakaryoblast	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
auditory system disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
Autoimmune disease of skin and connective tissue	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
Tectum mesencephali	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.868
superficial stratum of r7BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	3.49643
caudal linear (raphe) nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.21026
TIA1	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF217-24962896-MCF7-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
TFK1	DepMap CRISPR Gene Dependency	1.0	3.1668
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.3377
optic fiber layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14
calcium ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
GSE224969,GSE224971_3_v_5_chtop_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Johnston's organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.71
KDM5B	ENCODE Transcription Factor Targets	1.0	null
Psoriasis	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
GTEX-NPJ7-0011-R9a-SM-2TC5R	GTEx Tissue Sample Gene Expression Profiles	1.0	0.868039
autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060518
metal ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
GSE158182_3_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NFYA	JASPAR Predicted Transcription Factor Targets	1.0	null
DCTN5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04243
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4091
SLC19A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21737
Perturb_14495_KO_Tcfl5_SRP322934	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	2.26526
NCI-H630	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Deafness	HuGE Navigator Gene-Phenotype Associations	1.0	null
abnormal hearing physiology	MPO Gene-Phenotype Associations	1.0	null
supporting cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.405176
RFC1	Pathway Commons Protein-Protein Interactions	1.0	null
Leber congenital amaurosis 10	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.648
Lateral habenula	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3187
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.145
Dehydrated hereditary stomatocytosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.236
primary auditory cortex (core)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27249
mantle zone of r1BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.48467
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
Alport syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.296
DANG	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
GSE206516,GSE206518_0_v_4_ptdss2_human	RummaGEO Gene Perturbation Signatures	1.0	null
SEC23B	Pathway Commons Protein-Protein Interactions	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041292
GTEX-PWO3-0011-R6A-SM-2I5F3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.894106
gastric cancer cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.216325
GOSR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05725
founder	GeneRIF Biological Term Annotations	1.0	null
multicellular organismal process	GO Biological Process Annotations 2015	1.0	null
MAFK_IMR-90_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Usher syndrome type 1C	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.483
SLC39A13_Deficiency_GDS3485_570_mouse_Chondrocytes	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
GSE233049_1_v_0_atf3_human	RummaGEO Gene Perturbation Signatures	1.0	null
lateral part of the isB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.26635
EFF-1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.591
PPARG	JASPAR Predicted Transcription Factor Targets	1.0	null
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39225
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	111.746
carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.074401
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
SMAD3	ChEA Transcription Factor Targets	1.0	null
abnormal anterior eye segment morphology	MPO Gene-Phenotype Associations	1.0	null
GATA3-24758297-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-P4QT-0626-SM-3NMCP	GTEx Tissue Sample Gene Expression Profiles	1.0	2.0945
cochlear nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.02235
GAPDH	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal dominant nonsyndromic deafness 65	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.695
hsa-miR-548g	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
CHAGOK1	CCLE Cell Line Gene Expression Profiles	1.0	1.60831
Autosomal recessive nonsyndromic deafness 8	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.951
Autosomal recessive nonsyndromic deafness 42	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.515
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
medial septal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.835596
ERF::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.0592
Supporting cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.239
SLC39A10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42142
Retrosplenial area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.15265
upper (rostral) rhombic lip_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.844614
TP53RK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03689
Autosomal recessive nonsyndromic deafness 1A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.032
KRT31	Pathway Commons Protein-Protein Interactions	1.0	null
JDP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6402
SATB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2033
periventricular stratum of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.9383
PSPC1	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal deiters cell morphology	MPO Gene-Phenotype Associations	1.0	null
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.59894
ventrolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02576
Bladder Urothelial Carcinoma_BLCA_TCGA-BL-A13J-01A-11R-A10U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-XK95-1026-SM-4GIDV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1851
aminoglycoside-induced deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.609
abnormal voluntary movement	MPO Gene-Phenotype Associations	1.0	null
Rare genetic deafness	ClinVar Gene-Phenotype Associations 2025	1.0	null
urinary bladder	HPA Tissue Gene Expression Profiles	1.0	1.58165
cone-rod dystrophy 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.137
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Baraitser-Winter syndrome 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
north	GeneRIF Biological Term Annotations	1.0	null
GTEX-S4Q7-1226-SM-4AD5I	GTEx Tissue Sample Gene Expression Profiles	1.0	1.1216
superficial stratum of r7Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.68532
Rubella	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.079
U-698-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84147
PMC11632615-lqae162_supplemental_file.pdf-9-SNAI2_SNAI2	Rummagene Transcription Factor Associations 2026	1.0	null
RPS15A	Pathway Commons Protein-Protein Interactions	1.0	null
deafness, autosomal recessive 7	OMIM Gene-Disease Associations	1.0	null
morphological abnormality of the gastrointestinal tract	GWASdb SNP-Phenotype Associations	1.0	0.184438
GTEX-NL4W-0011-R10A-SM-2I3DY	GTEx Tissue Sample Gene Expression Profiles	1.0	0.87426
DOK7	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-Q2AH-1526-SM-48TZG	GTEx Tissue Sample Gene Expression Profiles	1.0	1.19843
HNRNPA1	Pathway Commons Protein-Protein Interactions	1.0	null
GFAP	Pathway Commons Protein-Protein Interactions	1.0	null
YKT6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61958
CCT7	Pathway Commons Protein-Protein Interactions	1.0	null
SBC5	CCLE Cell Line Gene Expression Profiles	1.0	2.25723
blood	GTEx Tissue Gene Expression Profiles	-1.0	-0.922462
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69706
PAX3	ChEA Transcription Factor Targets	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.910946
cochlear ganglion degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
cerebellar nuclei of CbV	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.14528
near	GeneRIF Biological Term Annotations	1.0	null
GSE158715_2_v_4_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
IFI27L2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2453
Retrosplenial area, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.031
intermediate stratum of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.16264
OLIG2	ChEA Transcription Factor Targets	1.0	null
HNRNPDL	Pathway Commons Protein-Protein Interactions	1.0	null
TCF7	ChEA Transcription Factor Targets	1.0	null
cosegregating	GeneRIF Biological Term Annotations	1.0	null
LGALS3BP	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal recessive nonsyndromic deafness 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.824
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3417
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5971-01A-11R-1686-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
r3 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.14606
hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
L428	CCLE Cell Line Gene CNV Profiles	1.0	1.49646
Sarcoma_SARC_TCGA-FX-A3RE-01A-11R-A22K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7473-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE199541_2_v_4_mbd2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-PX3G-3026-SM-48TZR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00747
GSE133329_0_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
SP in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.06683
abnormalities of the peripheral arteries	GWASdb SNP-Phenotype Associations	1.0	0.23333
AGO1	Pathway Commons Protein-Protein Interactions	1.0	null
RPL19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07444
RPL11	Pathway Commons Protein-Protein Interactions	1.0	null
PUF60	Pathway Commons Protein-Protein Interactions	1.0	null
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.92089
BBLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.52657
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.613742
superficial stratum of THyB-I	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06535
LUC7L2	Pathway Commons Protein-Protein Interactions	1.0	null
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.498
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048082
Taenia tecta, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.55178
KYSE-520	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.28662
intermediate stratum of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.61939
cytoplasm	LOCATE Predicted Protein Localization Annotations	1.0	null
families	GeneRIF Biological Term Annotations	1.0	null
EEF1B2	Pathway Commons Protein-Protein Interactions	1.0	null
cerebellar nuclei of CbH	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08926
SRSF2	Pathway Commons Protein-Protein Interactions	1.0	null
stereocilium bundle tip	GO Cellular Component Annotations 2015	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-66-2785-01A-01R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE145639_1_v_6_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TSR2	Pathway Commons Protein-Protein Interactions	1.0	null
monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046826
GTEX-OXRL-2126-SM-3NM98	GTEx Tissue Sample Gene Expression Profiles	1.0	1.33085
GTEX-OOBK-2126-SM-3LK5T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.27191
Kidney Chromophobe_KICH_TCGA-KL-8332-11A-01R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NKX6-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.616
CCBL2	Pathway Commons Protein-Protein Interactions	1.0	null
Gustatory areas, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.10461
Vestibular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.315
Lung	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.654
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A3-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perrault syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.101
Stereocilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.399
UMUC6	DepMap CRISPR Gene Dependency	1.0	2.51219
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MN-60	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TSR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04603
cell projection part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.046909
RCBTB1	Pathway Commons Protein-Protein Interactions	1.0	null
Sensorineural Hearing Loss (Disorder)	DisGeNET Gene-Disease Associations	1.0	null
PRDX6	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal hair cell mechanoelectric transduction	MGI Mouse Phenotype Associations 2023	1.0	null
Muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.347
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0471
Secondary motor area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.53388
GSE147876,GSE147877_2_v_10_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GTEX-NPJ8-1626-SM-2HMIY	GTEx Tissue Sample Gene Expression Profiles	1.0	0.941652
CAL27	CCLE Cell Line Gene CNV Profiles	1.0	1.61566
MIF	Pathway Commons Protein-Protein Interactions	1.0	null
Agranular insular area, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00435
Acute Myeloid Leukemia_LAML_TCGA-AB-2976-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of r7BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.3748
establishment of localization	GO Biological Process Annotations 2015	1.0	null
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-K2-ATF3_peaks_Context1_2-Gene_Name_ATF3	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-QDT8-0011-R5A-SM-32PKN	GTEx Tissue Sample Gene Expression Profiles	1.0	0.831592
Sensory cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.121
ventricular (matrix) zone of pons	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.15166
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4112
Secondary motor area, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.97615
CA46	CCLE Cell Line Gene CNV Profiles	-1.0	-2.0495
Hearing Loss	DisGeNET Gene-Phenotype Associations	1.0	null
Wes	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.939
Autosomal recessive nonsyndromic deafness 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.579
Spanning component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.38
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5968
cell part	GO Cellular Component Annotations 2015	1.0	null
Sickle cell disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.155
EFO27	CCLE Cell Line Gene CNV Profiles	1.0	1.42312
amygdaloid complex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.19834
Stereocilium	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
ETV2::FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4512
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1698
GTEX-OIZH-2126-SM-3NB1P	GTEx Tissue Sample Gene Expression Profiles	1.0	1.43076
PMC6080909-JEM_20171312_TableS1.xlsx-miR-196_predicted-Table_S1_miR-196a_b_predicted_targets_by_PITA_PicTar_TargetScan_and_DIANA_prediction_algorithms_ZFP1	Rummagene Transcription Factor Associations 2026	1.0	null
Retrosplenial area, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.37285
SG in granular insular cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.46187
Autoimmune disease of musculoskeletal system	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
GSE158834_10_v_6_palmitic acid_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC4051124-1471-2164-15-256-S15.XLSX-WES_IPD-RBCK1_1-Target_RBCK1	Rummagene Transcription Factor Associations 2026	1.0	null
periventricular stratum of SeDg	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32224
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4211
midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.234016
HCS2	DepMap CRISPR Gene Dependency	1.0	4.01989
HICS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.647
FTSJ3	Pathway Commons Protein-Protein Interactions	1.0	null
different	GeneRIF Biological Term Annotations	1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3478
carcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065969
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9643
KEAP1	Pathway Commons Protein-Protein Interactions	1.0	null
nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	2.34788
NAT14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33229
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Nodular Sclerosis Classical Hodgkin Lymphoma	DisGeNET Gene-Disease Associations	1.0	null
spinalcordupper	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.8408
REST-21632747-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
asian	GeneRIF Biological Term Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CW-5589-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2439
DYNC1LI1	Pathway Commons Protein-Protein Interactions	1.0	null
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	1.90926
GTEX-QVUS-0011-R3A-SM-3GAFD	GTEx Tissue Sample Gene Expression Profiles	1.0	0.827126
tissues, cell types and enzyme sources	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
abnormal involuntary movement	MPO Gene-Phenotype Associations	1.0	null
inner ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.5216
GTEX-RWSA-2426-SM-47JXR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11121
abnormal cochlear outer hair cell morphology	MPO Gene-Phenotype Associations	1.0	null
male reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6962-11A-01R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Tyrosinemia type I	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.571
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.200328
Usher syndrome type 1D	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.008
Corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.046
Ribbon synapse	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.198
Usher syndrome type 2D	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.494
HSP90AB1	Pathway Commons Protein-Protein Interactions	1.0	null
496100392_HIP_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.98483
LANCL1	Pathway Commons Protein-Protein Interactions	1.0	null
arteriosclerosis	GWASdb SNP-Disease Associations	1.0	0.374267
SF767	CCLE Cell Line Gene CNV Profiles	1.0	1.64036
Brain Lower Grade Glioma_LGG_TCGA-CS-5395-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8EG-01A-11R-A36F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76697
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
MATR3	Pathway Commons Protein-Protein Interactions	1.0	null
SNRPE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09127
calcium ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
intermediate stratum of r1BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.87739
18614019-TableS4c	GeneSigDB Published Gene Signatures	1.0	null
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6208
KDM5B_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-S33H-0126-SM-4AD62	GTEx Tissue Sample Gene Expression Profiles	1.0	1.05249
NRL_Deficiency_GDS1693_238_mouse_Photoreceptors cells of retinas at P10	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6526
Microvillus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.847
MCCC2	Pathway Commons Protein-Protein Interactions	1.0	null
JUP	Pathway Commons Protein-Protein Interactions	1.0	null
Cognitive disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
GSE88819_1_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC11031166-SAG-2302-87_0_Appendix_1_SG_IHDS_(569_genes)_Final_List.xlsx-AP1-Genes_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-P4QS-2126-SM-3NMCF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.45738
Parasympathetic ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.573
GSE229580_2_v_3_creb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ETV3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.164
Frontal pole, cerebral cortex	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.27217
abnormal spinal reflex	MPO Gene-Phenotype Associations	1.0	null
EXOSC3	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
NDUFA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03592
HCC1569	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
Nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.121
PLEKHG2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27044
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.61038
PHF8_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Tobacco Use Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
SPDEF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6573
OCI-LY-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91683
Testicular cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.617
GSE216043_3_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GTEX-T8EM-0526-SM-4DM64	GTEx Tissue Sample Gene Expression Profiles	1.0	1.26298
GTEX-QEG5-1426-SM-447AS	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11712
abnormal locomotor behavior	MPO Gene-Phenotype Associations	1.0	null
H2AFZ_fibroblast of dermis_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
P4HB	Pathway Commons Protein-Protein Interactions	1.0	null
ion transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
TRIM21	Pathway Commons Protein-Protein Interactions	1.0	null
f95	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.717
PMC4149371-pone.0105180.s010.xls-SOX2-GENE_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.70858
SOX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5239
superficial stratum of r10BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.27356
immune	GAD High Level Gene-Disease Associations	1.0	0.293278
Ornithine carbamoyltransferase deficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
GSE211262,GSE211263_3_v_1_pbrm1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SNAP29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27355
GSE125219,GSE125221_4_v_0_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SW1990	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45389
RPL19	Pathway Commons Protein-Protein Interactions	1.0	null
SRSF3	Pathway Commons Protein-Protein Interactions	1.0	null
HEC265	DepMap CRISPR Gene Dependency	1.0	3.09363
Cranial ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.82
ETV2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5779
SW 1990	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.18122
FOXO3-23340844-DLD1-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PPP3CB	Pathway Commons Protein-Protein Interactions	1.0	null
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04873
abnormality of leukocytes	GWASdb SNP-Phenotype Associations	1.0	0.092178
GSE216043_7_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Spondyloepiphyseal dysplasia congenita	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.248
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
ACTB	Pathway Commons Protein-Protein Interactions	1.0	null
Calyx of Held	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.851
Lower tip-link density	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.129
Hepatic Cirrhosis_Liver_GSE6764	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-2.80297
Blindness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.777
RASL12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41432
layer 4 of CCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23325
primary auditory cortex (core)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27746
neuron degeneration	MPO Gene-Phenotype Associations	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table2_ChinaMAP_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
amygdaloid complex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.904844
KRT71	Pathway Commons Protein-Protein Interactions	1.0	null
GSE129153_0_v_1_forskolin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ventral medial nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.87203
rostral subdivision of medial nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.25151
RPLP0	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7593-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
layer 2 of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.31041
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A1HY-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PABPN1	Pathway Commons Protein-Protein Interactions	1.0	null
cochlear ganglion degeneration	MPO Gene-Phenotype Associations	1.0	null
GPC6	Pathway Commons Protein-Protein Interactions	1.0	null
EEF1A1	Pathway Commons Protein-Protein Interactions	1.0	null
PDE10A_KO_GDS4542_291_mouse_striatum	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
G3BP2	Pathway Commons Protein-Protein Interactions	1.0	null
SNU878	CCLE Cell Line Gene Expression Profiles	1.0	1.98016
non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16935
GSE211262,GSE211263_0_v_1_pbrm1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Foxo1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.4556
Kidney renal clear cell carcinoma_KIRC_TCGA-CW-5587-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
neurological system process	GO Biological Process Annotations 2015	1.0	null
Autosomal recessive nonsyndromic deafness 86	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.775
hodgkin's lymphoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.488169
Parapyramidal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.88269
addition	GeneRIF Biological Term Annotations	1.0	null
Neurilemmoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.145
Sertoli cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.769
Choanomastigote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.188
Perturb_6165_KO_Tet2/Tet3_SRP060364	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	5.94927
Infralimbic area, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2814
GTEX-S33H-0826-SM-4AD5Y	GTEx Tissue Sample Gene Expression Profiles	1.0	0.895952
NCI-H250	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-U8XE-1726-SM-4E3IF	GTEx Tissue Sample Gene Expression Profiles	1.0	1.30828
Skin disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
layer 2 of CCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50657
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
DOK1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-N7MS-1626-SM-3LK5F	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11685
r1 part of superior vestibular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0394
PMC11511846-42003_2024_7078_MOESM3_ESM.xlsx-ST18-Unnamed_19_ST18	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-5302-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
coronary artery disease	GWASdb SNP-Disease Associations	1.0	0.692747
Phenylketonuria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
GTEX-QDT8-0011-R3A-SM-32PKR	GTEx Tissue Sample Gene Expression Profiles	1.0	0.853853
Sensorineural Hearing Loss, Bilateral	DisGeNET Gene-Disease Associations	1.0	null
Autosomal recessive nonsyndromic deafness 6	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.398
LRRC15	Pathway Commons Protein-Protein Interactions	1.0	null
TOP1	Pathway Commons Protein-Protein Interactions	1.0	null
Deafness, autosomal recessive 7	ClinVar Gene-Phenotype Associations	1.0	null
NFIC::TLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5625
KO52	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46378
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.041235
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.01864
Mesothelioma_MESO_TCGA-MQ-A4LP-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Septate junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.685
Pheochromocytoma and Paraganglioma_PCPG_TCGA-P8-A5KC-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Seminiferous tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.437
Sox5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.8065
GTEX-T8EM-1826-SM-4DM7F	GTEx Tissue Sample Gene Expression Profiles	1.0	0.939383
Autosomal recessive nonsyndromic deafness 39	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.447
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.109
Respiratory system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.654
abnormal lens morphology	MPO Gene-Phenotype Associations	1.0	null
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8764
TC32	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60634
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03415
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3358-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-V1D1-1026-SM-4JBHE	GTEx Tissue Sample Gene Expression Profiles	1.0	2.31292
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6528
GTEX-T5JC-0011-R4A-SM-32PLT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.831457
testis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
posterior tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.57394
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.975911
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
HCC1569	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.592707
GTEX-X585-1226-SM-46MW7	GTEx Tissue Sample Gene Expression Profiles	1.0	0.985635
epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.064905
PLIN5_OE_GSE44192_482_mouse_heart	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Thymus	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	0.824767
deep layers of caudal entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.30273
GTEX-XMK1-1326-SM-4B65Q	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17549
Lateral dorsal nucleus of thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.5052
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041274
hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.066475
GSE118077_1_v_2_sprr5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CDX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5138
Nervous system disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Perturb_3935_KO_TFAP2A_SRP273704	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GTEX-QMR6-0011-R10A-SM-32PKO	GTEx Tissue Sample Gene Expression Profiles	1.0	0.892906
Declive (VI), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.23746
ZNF217	ChEA Transcription Factor Targets	1.0	null
SW 948	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09181
PRELID1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.08686
RPL36	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-TKQ1-0326-SM-4DXSM	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28748
Lingula (I)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.36372
FOXA1-27270436-VCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
duodenum	HPA Tissue Protein Expression Profiles	1.0	1.07254
Myosin XV complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.877
Brain Lower Grade Glioma_LGG_TCGA-DU-7012-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WBP2	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S7SE-0011-R6A-SM-2XCD9	GTEx Tissue Sample Gene Expression Profiles	1.0	0.924629
Autosomal recessive nonsyndromic deafness 1B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.145
DNAJA1	Pathway Commons Protein-Protein Interactions	1.0	null
intracellular organelle part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
HNRNPAB	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-OHPM-2126-SM-3LK75	GTEx Tissue Sample Gene Expression Profiles	1.0	1.22097
SP in dorsomedial frontal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.09406
Filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.721
gonad	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
ELK1::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.114
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0329
behavior/neurological phenotype	MPO Gene-Phenotype Associations	1.0	null
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8F_Het1A-GATA6_2d_5x_closed-Gene_Name_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041988
atog	GeneRIF Biological Term Annotations	1.0	null
exons	GeneRIF Biological Term Annotations	1.0	null
IGR37	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59622
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JX-A5QV-01A-22R-A28H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Visceral hump	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.699
Cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.404
TBCD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15795
ASH2L-23239880-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03415
PCM6	CCLE Cell Line Gene Expression Profiles	1.0	2.00782
Perturb_15978_KO_Tsga8_SRP254760	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.97407
GSE167886_3_v_1_chd7_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Nonsyndromic deafness	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.068712
germ plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.341151
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.5095
SNRNP70	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of r5Co	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.04329
FOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.108
RPTN	Pathway Commons Protein-Protein Interactions	1.0	null
CALR	Pathway Commons Protein-Protein Interactions	1.0	null
Primary immunodeficiency disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
monocyte chemoattractant protein 1 (66-77)	GAD Gene-Disease Associations	1.0	null
gated channel activity	GO Molecular Function Annotations 2015	1.0	null
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-K2-ATF3_peaks_Context1_2-Nearest_Ensembl_ATF3	Rummagene Transcription Factor Associations 2026	1.0	null
retina	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.840135
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.87212
GTEX-WFON-2026-SM-4LVMW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.34917
AGO2	Pathway Commons Protein-Protein Interactions	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-ZS-A9CF-02A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Z chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.73
ZNF287	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0252
GPI	Pathway Commons Protein-Protein Interactions	1.0	null
Intellectual disability	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
GSE128634,GSE128636_2_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
AP-2rep	MotifMap Predicted Transcription Factor Targets	1.0	null
hsa-miR-494	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
intracellular organelle part	GO Cellular Component Annotations 2015	1.0	null
PRPF6	Pathway Commons Protein-Protein Interactions	1.0	null
ELF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.068
KARS	Pathway Commons Protein-Protein Interactions	1.0	null
GSE125219,GSE125221_3_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
Central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GTEX-UPK5-1226-SM-4IHL8	GTEx Tissue Sample Gene Expression Profiles	1.0	2.10855
bed nucleus of the stria terminalis, medioseptal division	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32224
Midbrain raphe nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37073
founders	GeneRIF Biological Term Annotations	1.0	null
heterozygous	GeneRIF Biological Term Annotations	1.0	null
intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GSE216043_7_v_6_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H1755	COSMIC Cell Line Gene Mutation Profiles	1.0	null
genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.045577
HUO9	DepMap CRISPR Gene Dependency	1.0	5.94492
Inner ear vestibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.796
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5772
Immune system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
GSE189336_1_v_0_nitric oxide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GABARAPL2	Pathway Commons Protein-Protein Interactions	1.0	null
Asi complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.177
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	64.9476
mantle zone of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.19131
spiral organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.01612
rectum	HPA Tissue Protein Expression Profiles	1.0	1.07254
PITX1-30713093-EPITHELIAL-HUMAN-TONGUE-SCC	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915696
NZOV9	DepMap CRISPR Gene Dependency	1.0	2.38067
Tietz syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.098
cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.07034
U2AF2	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal vestibular saccule morphology	MPO Gene-Phenotype Associations	1.0	null
ONECUT3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.1341
Musculoskeletal system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
Lung squamous cell carcinoma_LUSC_TCGA-98-A53J-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TCF4-23295773-U87-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
primary visual cortex (striate cortex, area V1/17)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05556
METTL3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.251
rostral part of entorhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.47101
YBX3	Pathway Commons Protein-Protein Interactions	1.0	null
myeloid progenitor cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.042717
rostral presubiculum	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.78761
Alx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.7214
lateral hypothalamic area, tuberal part	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.941189
VCAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38141
integument	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055895
KRT5	Pathway Commons Protein-Protein Interactions	1.0	null
Brain stem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.093
Body wall muscle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.064
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.65
A1207	CCLE Cell Line Gene CNV Profiles	1.0	1.49041
recessive	GeneRIF Biological Term Annotations	1.0	null
gut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.180689
Head	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
side of membrane	GO Cellular Component Annotations 2015	1.0	null
H3K4me1_megakaryocyte_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CW-6090-11A-01R-1672-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A3OQ-11A-21R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
superficial stratum of r6BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.34054
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.18725
family	GeneRIF Biological Term Annotations	1.0	null
GTEX-U3ZH-0926-SM-4DXU4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.15545
TMC-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.127
GTEX-Q2AG-0011-R2A-SM-2HMIT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.00494
RAB3A_Mutation - D77G point mutation_GDS2482_702_mouse_Cortex	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
other	GAD High Level Gene-Disease Associations	1.0	0.293278
Nasal squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.929
BRD9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10527
Autosomal recessive nonsyndromic deafness 4	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.567
ASNSD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18284
primary motor cortex (area M1, area 4)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.907267
neoplasm of the gastrointestinal tract	GWASdb SNP-Phenotype Associations	1.0	0.212191
inner	GeneRIF Biological Term Annotations	1.0	null
dorsal part of alar p2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.01152
MZ in ventromedial extrastriate cortex (VP)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.28518
hsa-miR-3132	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
IZ in caudal midinferior temporal cortex (area TF)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.04486
organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.4271
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GO-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Beta thalassemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.208
cochlear outer hair cell degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
CHARGE syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
Pyramus (VIII), molecular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.70517
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30874
Adrenocortical carcinoma_ACC_TCGA-OR-A5LS-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE205729,GSE205731_2_v_3_tazemetostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
RPS3	Pathway Commons Protein-Protein Interactions	1.0	null
Perturb_3439_KD_Ythdf2_SRP269726	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-3.33046
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.933
Spiral organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.384
respiratory system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
EEF2	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-58-8393-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hearing abnormality	HPO Gene-Disease Associations	1.0	null
ERG_01_17	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.04289
RCH-ACV	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NANOG-16153702-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Response to cognitive-behavioural therapy in anxiety disorder	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.539794
PCMT1	Pathway Commons Protein-Protein Interactions	1.0	null
amygdaloid complex_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.949707
Perturb_3646_KO_HDAC1_ERP115567	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	20.0
ELP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96832
BL-41	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Muscle - Skeletal	GTEx Tissue Gene Expression Profiles 2023	1.0	2.13182
SP in primary visual cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.04031
ChIP_SOX17_20123909	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JG-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
C14orf166	Pathway Commons Protein-Protein Interactions	1.0	null
disease of anatomical entity	GWASdb SNP-Disease Associations	1.0	0.046376
abnormal sensory neuron physiology	MPO Gene-Phenotype Associations	1.0	null
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.471
ME1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35829
disease of cellular proliferation	GWASdb SNP-Disease Associations	1.0	0.098771
voltage-gated monoatomic cation channel activity	GO Molecular Function Annotations 2023	1.0	null
mantle zone of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.76809
Leaflet of membrane bilayer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.975
GBAS	Pathway Commons Protein-Protein Interactions	1.0	null
Integumentary system disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
SMAD3-21741376-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5359-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.98844
GSE128634,GSE128636_1_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
immune system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060439
TIAL1	Pathway Commons Protein-Protein Interactions	1.0	null
Retinal rod	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.632
CARM1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-SNMC-1026-SM-4DM7K	GTEx Tissue Sample Gene Expression Profiles	1.0	1.29056
Frontal pole, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56942
GTEX-R55E-0726-SM-48FCZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.30244
GSE216043_11_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
icSARA deltaORF6_7Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.06638
EPRS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40617
deiters cell degeneration	MPO Gene-Phenotype Associations	1.0	null
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8363
GSE208096_1_v_0_progesterone_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
stereocilium bundle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5882-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.11
cellular developmental process	GO Biological Process Annotations 2015	1.0	null
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1838
LC1SQ	DepMap CRISPR Gene Dependency	1.0	2.70173
Swim bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.706
Labyrinthine zone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.064
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.436
superficial dorsofrontal area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.59787
MZ in rostral perirhinal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.02671
mediodorsal nucleus of thalamus_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.0676
ATP5B	Pathway Commons Protein-Protein Interactions	1.0	null
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.99415
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EK-A2PI-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-XUJ4-1026-SM-4BOPB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.51801
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
RPL22	Pathway Commons Protein-Protein Interactions	1.0	null
Spiral organ cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
outer CP in (rostral) midinferior temporal cortex (area 36)	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.942376
organ of corti degeneration	MPO Gene-Phenotype Associations	1.0	null
SARS-CoV MA15_Day7-PFU-10^5_None_GSE33266	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.00369
Tricellular tight junction	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.521
subgranular zone of rostral dentate gyrus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.87394
intermediate stratum of isBI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20596
GSE124410_6_v_0_stk40_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SCC15	CCLE Cell Line Gene CNV Profiles	1.0	1.3432
PMC11046693-pnas.2320938121.sapp.pdf-123-SOX6_SOX6	Rummagene Transcription Factor Associations 2026	1.0	null
GSE230263,GSE230265_0_v_1_runx1_human	RummaGEO Gene Perturbation Signatures	1.0	null
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3617
RPS6	Pathway Commons Protein-Protein Interactions	1.0	null
Sarcoma_SARC_TCGA-FX-A2QS-11A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Abdominal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.733
SUM225CWN	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.970917
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GARS	Pathway Commons Protein-Protein Interactions	1.0	null
RYK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48216
nucleus of the stria terminalis, medial division, anterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.30744
hsa-miR-890	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.6534
Usher syndrome type 3A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.899
LOXL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.43
HSPA8	Pathway Commons Protein-Protein Interactions	1.0	null
KLHL21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57059
Brain Lower Grade Glioma_LGG_TCGA-HT-7879-01A-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6907-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of the systemic arterial tree	GWASdb SNP-Phenotype Associations	1.0	0.130083
GTEX-XQ8I-1526-SM-4BOOH	GTEx Tissue Sample Gene Expression Profiles	1.0	1.94557
lymphoblastic leukemia	GWASdb SNP-Disease Associations	1.0	0.424804
GSE231339_1_v_0_itgav_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC7927818-AAC.01755-20-s0002.xlsx-Supplemental_Table_1-Supplemental_Table_1_List_of_significantly_altered_genes_in_MDMs_differentiated_in_the_presence_of_PrEP_FTC_v_No_Drug_TDF_v_No_Drug_FTC_v_TDF_SRY	Rummagene Transcription Factor Associations 2026	1.0	null
LYAR	Pathway Commons Protein-Protein Interactions	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-B2-5636-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Neuron projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.488
Androgen insensitivity syndrome_Fibroblast_GSE3871	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.55672
abnormal ear morphology	MGI Mouse Phenotype Associations 2023	1.0	null
GSE158182_5_v_0_pnpla3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
segregating	GeneRIF Biological Term Annotations	1.0	null
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-FF-8046-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PPP2CA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.07474
Deafness, Autosomal Dominant 36	CTD Gene-Disease Associations	1.0	2.88009
Nuclear inner membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.965
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03502
Glossopharyngeal nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.89
Hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.372
Epibranchial	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.759
XRN2	Pathway Commons Protein-Protein Interactions	1.0	null
r6 part of rostral ventromedial reticular area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.54356
Lateral wall of outer hair cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.5
sequencing	GeneRIF Biological Term Annotations	1.0	null
mantle zone of r1Ve	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.07397
A549_CUDC-907_100nM_24h	Sci-Plex Drug Perturbation Signatures	1.0	0.0221728
Neuromast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.17
SKCO1	CCLE Cell Line Gene CNV Profiles	1.0	2.59696
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4906
divalent metal ion transport	GO Biological Process Annotations 2015	1.0	null
Vallate papilla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.036
Perturb_3595_KO_HRI_SRP218218	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	1.59779
TCF4-23295773-U87-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
superior colliculus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.95133
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30874
GTEX-P4QT-1626-SM-2S1NP	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14012
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZS-06A-12R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SLIK (SAGA-like) complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.263
Sensillum trichodeum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.172
A-Netherlands-602-2009(H1N1)_0Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.48578
MFE319	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63892
CREM	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8755
mantle zone of isBM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.856
sensorineural	GeneRIF Biological Term Annotations	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.301
acute lymphocytic leukemia	GWASdb SNP-Disease Associations	1.0	0.609395
RPLP2	Pathway Commons Protein-Protein Interactions	1.0	null
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.274835
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.820026
MED31	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38419
cerebellar vermis	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.22819
RPLP1	Pathway Commons Protein-Protein Interactions	1.0	null
RPS25	Pathway Commons Protein-Protein Interactions	1.0	null
voltage-gated cation channel activity	GO Molecular Function Annotations 2015	1.0	null
H3K4me1_liver_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MPP2	Pathway Commons Protein-Protein Interactions	1.0	null
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.425
GTEX-OOBK-0625-SM-3LK5P	GTEx Tissue Sample Gene Expression Profiles	1.0	0.960022
bone resorption disease	GWASdb SNP-Disease Associations	1.0	0.822323
KARPAS-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963473
Auditory capsule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.009
59M	DepMap CRISPR Gene Dependency	1.0	2.74235
RPL13	Pathway Commons Protein-Protein Interactions	1.0	null
ventrolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.24322
Thalamus, polymodal association cortex related	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.05796
PLRG1	Pathway Commons Protein-Protein Interactions	1.0	null
SOX2-30713093-EPITHELIAL-HUMAN-TONGUE-SCC	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-3194-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
EIF4A1	Pathway Commons Protein-Protein Interactions	1.0	null
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.7
Kinocilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.516
lateral tuberal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.41728
Autosomal recessive nonsyndromic deafness 30	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.984
GTEX-XMK1-1126-SM-4IHJ8	GTEx Tissue Sample Gene Expression Profiles	1.0	0.830513
chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.07323
PHGDH	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-QLQW-1026-SM-447A9	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17204
detection of stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-E7-A6MF-01A-12R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70J-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ChIP_REST_18959480	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
red nucleus, magnocellular part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.24393
disease of anatomical entity	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
HSPA9	Pathway Commons Protein-Protein Interactions	1.0	null
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2378
arnshl	GeneRIF Biological Term Annotations	1.0	null
Atoh1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	33.9047
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QT-A5XL-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sensorineural hearing impairment	HPO Gene-Disease Associations	1.0	null
Foxj2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.4633
FOXP1-21924763-HESC-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Sarcoma_SARC_TCGA-KD-A5QU-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-5853-01A-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of metabolism	GWASdb SNP-Disease Associations	1.0	0.115538
Ear malformation	ClinVar Gene-Phenotype Associations 2025	1.0	null
Shukla-Vernon syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.042
LARP1	Pathway Commons Protein-Protein Interactions	1.0	null
r4 part of parvocellular medial vestibular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31433
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.701304
FOXA1-33576154-HUMAN-HILARLN-PROSTATECANCER	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-XMK1-2026-SM-4B65K	GTEx Tissue Sample Gene Expression Profiles	1.0	1.33231
Secondary motor area, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-3.2283
alimentary canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.095035
TM-3 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.482
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4851
single	GeneRIF Biological Term Annotations	1.0	null
NCIH2228	CCLE Cell Line Gene CNV Profiles	1.0	1.65515
hsa-miR-561	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
GSE79291_1_v_2_streptozotocin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Prostate adenocarcinoma_PRAD_TCGA-J4-8198-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXO3-23340844-DLD1-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-2117	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.294939
response to mechanical stimulus	GO Biological Process Annotations 2015	1.0	null
abnormal neuron morphology	MPO Gene-Phenotype Associations	1.0	null
artery disease	GWASdb SNP-Disease Associations	1.0	0.191744
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3SR-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE234340_12_v_2_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Nonsyndromic genetic hearing loss	ClinVar Gene-Phenotype Associations 2025	1.0	null
PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PKP1	Pathway Commons Protein-Protein Interactions	1.0	null
Nonsyndromic Deafness	DisGeNET Gene-Disease Associations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-A76R-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NR2C2AP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.19271
N4BP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18488
Artery - Aorta	GTEx Tissue Gene Expression Profiles 2023	-1.0	-0.669113
GSE234340_12_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
YBX1	Pathway Commons Protein-Protein Interactions	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-FV-A4ZP-01A-12R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
inferolateral temporal cortex (area TEv, area 20)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.95852
TE8	CCLE Cell Line Gene CNV Profiles	1.0	1.47362
JURKAT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.3025
SNRPA	Pathway Commons Protein-Protein Interactions	1.0	null
Peripheral vertigo	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.93
abducens nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.05424
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35846
A253	CCLE Cell Line Gene Expression Profiles	1.0	1.3828
SPEGNB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00199
PHB	Pathway Commons Protein-Protein Interactions	1.0	null
KYSE520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.70812
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06028
Primary somatosensory area, lower limb, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.64963
orbital frontal cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.13156
mediodorsal nucleus of thalamus_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09089
GTEX-RNOR-0011-R9A-SM-2TF52	GTEx Tissue Sample Gene Expression Profiles	1.0	1.88212
cochlear hair cell degeneration	MPO Gene-Phenotype Associations	1.0	null
PAX3-FKHR-20663909-RHABDOMYOSARCOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-S3XE-1226-SM-4AD4L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.09949
USH2 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.533
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7874
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833037
KRT13	Pathway Commons Protein-Protein Interactions	1.0	null
bladder	GTEx Tissue Gene Expression Profiles	1.0	1.31913
RPL10A	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-XBEC-0126-SM-4GIDT	GTEx Tissue Sample Gene Expression Profiles	1.0	1.69601
cochlear ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.521617
diabetes mellitus	GWASdb SNP-Phenotype Associations	1.0	0.304597
basointermediate isthmic reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.20646
Taenia tecta, ventral part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.12713
STBD1	Pathway Commons Protein-Protein Interactions	1.0	null
CHO-K1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.965
RPS5	Pathway Commons Protein-Protein Interactions	1.0	null
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
SK-CO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4835
STAT4	MotifMap Predicted Transcription Factor Targets	1.0	null
ZFP57-27257070-CHIP-SEQ-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
lateral part of the lateral habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.75661
RPS20	Pathway Commons Protein-Protein Interactions	1.0	null
Lateral vestibular nucleus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
CD33+_Myeloid	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.89791
hsa-miR-4773	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
PMC6996670-6370386.f1.xlsx-Supplemental_table_2-AA_change_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
stereocilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.844237
GSE125219,GSE125221_4_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
BEN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormal motor capabilities/coordination/movement	MPO Gene-Phenotype Associations	1.0	null
CORL105	DepMap CRISPR Gene Dependency	1.0	2.66363
HOXD9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8858
calcium ion transport	GO Biological Process Annotations 2015	1.0	null
GTEX-XBED-2026-SM-4AT5D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21882
496100438_PCx_possible Alzheimer's disease_no TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03554
Orbital area, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13196
abnormality of skeletal morphology	GWASdb SNP-Phenotype Associations	1.0	0.063448
High myopia-sensorineural deafness syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.305
CETN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14745
pakistani	GeneRIF Biological Term Annotations	1.0	null
donor	GeneRIF Biological Term Annotations	1.0	null
MDAMB157	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.72491
SPTBN1	Pathway Commons Protein-Protein Interactions	1.0	null
TMEM160	Pathway Commons Protein-Protein Interactions	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
GSE145639_1_v_2_adar_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TCF4	ChEA Transcription Factor Targets	1.0	null
substrate-specific transporter activity	GO Molecular Function Annotations 2015	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RN-01A-12R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Congenital Deafness	DisGeNET Gene-Disease Associations	1.0	null
SERPINB3	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal otolith morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Outer ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.691
PLC/PRF/5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.66497
MDAMB453	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35642
abnormal cochlear inner hair cell morphology	MPO Gene-Phenotype Associations	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-E1-A7Z4-01A-11R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5075
9+2 non-motile cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.516
CDK4_knockdown_133_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.37505
HIST2H2BE	Pathway Commons Protein-Protein Interactions	1.0	null
ZNF384	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	240.108
Autosomal recessive nonsyndromic deafness 93	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.758
coronary artery disease	GWASdb SNP-Phenotype Associations	1.0	0.594349
IPO5	Pathway Commons Protein-Protein Interactions	1.0	null
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
GTEX-O5YV-1026-SM-3LK72	GTEx Tissue Sample Gene Expression Profiles	1.0	2.70235
UACC-257	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34736
GTEX-W5WG-1626-SM-4LMKG	GTEx Tissue Sample Gene Expression Profiles	1.0	1.68776
496100470_HIP_possible Alzheimer's disease_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.62525
NUDT21	Pathway Commons Protein-Protein Interactions	1.0	null
PAX3-FKHR-20663909-RHABDOMYOSARCOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Semicircular canal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.288
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3217
Superior semicircular canal dehiscence	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.419
Perturb_15537_KO_Setd2_SRP220248	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	1.0	1.66547
NMRK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15772
DHX30	Pathway Commons Protein-Protein Interactions	1.0	null
Wolfram syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.7
Disease	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
Peripheral nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.908
FOXO3	ChEA Transcription Factor Targets	1.0	null
superficial stratum of r2BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.38957
DDX21	Pathway Commons Protein-Protein Interactions	1.0	null
population	GeneRIF Biological Term Annotations	1.0	null
gated channel activity	GO Molecular Function Annotations 2025	1.0	null
CHAGOK1	DepMap CRISPR Gene Dependency	1.0	2.07608
WNT5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05032
Hmx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.5631
KLHL26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.50175
GTEX-XBED-1026-SM-48TCB	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04043
detection of mechanical stimulus involved in sensory perception	GO Biological Process Annotations 2025	1.0	null
Brain	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
mantle zone of PHyB-V	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.22053
leukemia	GWASdb SNP-Phenotype Associations	1.0	0.243751
PMC9327205-11658_2022_358_MOESM7_ESM.xlsx-K562-BP1-Symbol_DLX4	Rummagene Transcription Factor Associations 2026	1.0	null
biological_process	GO Biological Process Annotations 2015	1.0	null
intermediate gray layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32172
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.97
increased or absent threshold for auditory brainstem response	MPO Gene-Phenotype Associations	1.0	null
WDR77	Pathway Commons Protein-Protein Interactions	1.0	null
Ebolavirus(EBOV)_1day_Splenocytes_19683682_GSE17509	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.58506
PMC9305137-PATH-256-297-s005.xlsx-CIC_associated_DE_genes_IDH1-R-Unnamed_1_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal somatic nervous system morphology	MPO Gene-Phenotype Associations	1.0	null
KNS42	DepMap CRISPR Gene Dependency	1.0	2.03343
abnormal hair cell physiology	MPO Gene-Phenotype Associations	1.0	null
NPM1	Pathway Commons Protein-Protein Interactions	1.0	null
cas1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.611
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A70W-01A-12R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2987-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RPS13	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal motor capabilities/coordination/movement	MGI Mouse Phenotype Associations 2023	1.0	null
hsa-miR-520g	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Paraflocculus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.13862
cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
dorsolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15217
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-Row_names_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
VIM	Pathway Commons Protein-Protein Interactions	1.0	null
YSCCC	DepMap CRISPR Gene Dependency	1.0	2.26114
MAFF_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GTEX-Q2AI-1226-SM-48U14	GTEx Tissue Sample Gene Expression Profiles	1.0	1.28986
SRSF7	Pathway Commons Protein-Protein Interactions	1.0	null
RAB11FIP5	Pathway Commons Protein-Protein Interactions	1.0	null
Primary somatosensory area, lower limb, layer 6b	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.31725
ARG1	Pathway Commons Protein-Protein Interactions	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QH-01A-21R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
integral component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.10766
ChIP_ASH2L_23239880	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
PLOD1	Pathway Commons Protein-Protein Interactions	1.0	null
Skeletal Muscle Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	-1.0	-1.23518
Anchored component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.623
CDSN	Pathway Commons Protein-Protein Interactions	1.0	null
SNRPD3	Pathway Commons Protein-Protein Interactions	1.0	null
Cochlea	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.352
abnormal outer hair cell stereociliary bundle morphology	MPO Gene-Phenotype Associations	1.0	null
abnormal organ of corti supporting cell morphology	MPO Gene-Phenotype Associations	1.0	null
GP5D	DepMap CRISPR Gene Dependency	1.0	2.0598
temporal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.01189
deafness	MPO Gene-Phenotype Associations	1.0	null
EPC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.7927
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_SBP_AA-SYMBOL_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
intestinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.080051
GTEX-XUZC-1226-SM-4BRVJ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14443
abnormal cochlear hair cell stereociliary bundle morphology	MPO Gene-Phenotype Associations	1.0	null
GTEX-PX3G-2526-SM-48TZV	GTEx Tissue Sample Gene Expression Profiles	1.0	0.984558
NR3C1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2824-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HSPE1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7997806-41397_2020_194_MOESM2_ESM.xlsx-MAGMA_GENE_SBP_AA-GENE_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-A3-3387-11A-01R-1541-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ABL1_knockdown_137_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.36265
GSE158715_3_v_0_cyp1b1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Autosomal recessive nonsyndromic deafness 28	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.928
RAJI	DepMap CRISPR Gene Dependency	1.0	2.95028
head tossing	MGI Mouse Phenotype Associations 2023	1.0	null
Taenia tecta, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06006
neoplasm by anatomical site	GWASdb SNP-Phenotype Associations	1.0	0.098455
vestibular labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.99321
change	GeneRIF Biological Term Annotations	1.0	null
YWHAZ	Pathway Commons Protein-Protein Interactions	1.0	null
496100453_HIP_possible Alzheimer's disease_no TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04019
TE617T	CCLE Cell Line Gene Expression Profiles	1.0	1.45633
ion channel activity	GO Molecular Function Annotations 2015	1.0	null
RH4	DepMap CRISPR Gene Dependency	1.0	2.00058
Autosomal dominant nonsyndromic deafness 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.082
non-motile cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.014
NKX2-4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6895
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.0554
gastric adenocarcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.43989
FOXA1-25552417-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Autosomal dominant nonsyndromic deafness 27	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.266
Anterodorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.08426
inferolateral temporal cortex (area TEv, area 20)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21464
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.476
hsa-miR-578	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
Sensory dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.625
detected	GeneRIF Biological Term Annotations	1.0	null
RFC4	Pathway Commons Protein-Protein Interactions	1.0	null
CL11	DepMap CRISPR Gene Dependency	1.0	6.89328
PMC8379183-41467_2021_25326_MOESM9_ESM.xlsx-SALL4_unique_peaks-Unnamed_15_SALL4	Rummagene Transcription Factor Associations 2026	1.0	null
FU-OV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
r1 part of vestibulocerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.00497
Autosomal dominant nonsyndromic deafness 2B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.813
ZBED2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7826
Neuroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
salivary gland	HPA Tissue Protein Expression Profiles	1.0	1.07254
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Tapetum lucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
animal	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	1.53602
GSE156923_2_v_3_rbmx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PMC6360815-supp_gr.239053.118_Supplemental_Table_S2.xlsx-MAFs_targets-Table_of_potential_MAF_targets_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-128	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE135514_8_v_3_dasatinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Usher syndrome type 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.859
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1044
SOX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8682
HNRNPD	Pathway Commons Protein-Protein Interactions	1.0	null
nonsyndromic deafness	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
REST-21632747-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
HOXB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0419
lateral wings of the dorsal raphe nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.03315
TP63	ChEA Transcription Factor Targets	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-A57E-11A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cochlea	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.01185
SLC7A6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.88535
MZ in caudal cingulate cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.99778
esophagus	HPA Tissue Gene Expression Profiles	1.0	1.1269
calcium channel activity	GO Molecular Function Annotations 2023	1.0	null
voltage-gated ion channel activity	GO Molecular Function Annotations 2015	1.0	null
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
Lingula (I), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.21774
RPL23	Pathway Commons Protein-Protein Interactions	1.0	null
EWSR1	Pathway Commons Protein-Protein Interactions	1.0	null
metal ion transport	GO Biological Process Annotations 2015	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857177
Brain Lower Grade Glioma_LGG_TCGA-CS-4938-01B-11R-1896-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of the vasculature	GWASdb SNP-Phenotype Associations	1.0	0.092785
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.833037
GTEX-SE5C-1226-SM-4BRWV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.52138
UNC80	Pathway Commons Protein-Protein Interactions	1.0	null
X-linked deafness 4	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.747
DNAJC10	Pathway Commons Protein-Protein Interactions	1.0	null
voltage-gated potassium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.917
KANK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35079
Stereocilium shaft	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.33
abnormal hearing electrophysiology	MPO Gene-Phenotype Associations	1.0	null
GTEX-S7PM-0626-SM-4AD4Q	GTEx Tissue Sample Gene Expression Profiles	1.0	1.81857
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25172
vestibular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.99428
OAW42	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08071
Prostate-hillock cell of prostate epithelium	Tabula Sapiens Gene-Cell Associations	1.0	0.786338
CPSF6	Pathway Commons Protein-Protein Interactions	1.0	null
FXN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68721
Liver hepatocellular carcinoma_LIHC_TCGA-BC-A110-01A-11R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4273	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
Stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.708
496100597_HIP_dementia_TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39392
GSE48812_2_v_5_sulforaphane_human	RummaGEO Drug Perturbation Signatures	1.0	null
PKM	Pathway Commons Protein-Protein Interactions	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7908
PPAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72225
UBF1/2-26484160-CHIP-SEQ-FIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Cystic fibrosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.343
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.886315
muscular disease	GWASdb SNP-Disease Associations	1.0	0.200519
G120	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37419
Leber congenital amaurosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.7
urinarybladder_5c	HPA Tissue Sample Gene Expression Profiles	1.0	1.78951
TM-4 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.779
PAICS	Pathway Commons Protein-Protein Interactions	1.0	null
HADHB	Pathway Commons Protein-Protein Interactions	1.0	null
HLE	CCLE Cell Line Gene Expression Profiles	1.0	1.92494
nutrition disease	GWASdb SNP-Disease Associations	1.0	0.410469
cataracts	MPO Gene-Phenotype Associations	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-FU-A3TQ-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AHSA1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-QVUS-0011-R1A-SM-3GAD2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.48913
KRT76	Pathway Commons Protein-Protein Interactions	1.0	null
1221 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.775
Nonsyndromic Hearing Loss	ClinVar Gene-Phenotype Associations 2025	1.0	null
Tinnitus	DisGeNET Gene-Phenotype Associations	1.0	null
Microcytic anemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
BCKDHA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41875
Primary somatosensory area, nose	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00496
detection of mechanical stimulus involved in sensory perception	GO Biological Process Annotations 2015	1.0	null
Foxo3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.7598
peduncular nucleus of the stria medullaris	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.19267
stomach	HPA Tissue Protein Expression Profiles	1.0	1.07254
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4426
SHQ1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04883
plasma membrane part	GO Cellular Component Annotations 2015	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051442
NOM1	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
sensory perception of sound	GO Biological Process Annotations 2025	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-DZ-6133-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POM121C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.48315
hsa-miR-1279	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
GSE147366_1_v_2_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Ion channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.835
AR-20517297-VCAP-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
HEY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952912
Neuroepithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.039
LOX-IMVI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915696
Prostate adenocarcinoma_PRAD_TCGA-HC-7081-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNRNP200	Pathway Commons Protein-Protein Interactions	1.0	null
STAT1	JASPAR Predicted Transcription Factor Targets	1.0	null
GSE234340_9_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.00864
RPL13A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE158320,GSE183351_0_v_3_lin28b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZSCAN21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8986
GSE128634,GSE128636_4_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
british	GeneRIF Biological Term Annotations	1.0	null
GTEX-PLZ6-0526-SM-3P61C	GTEx Tissue Sample Gene Expression Profiles	1.0	2.29778
HSPA1B	Pathway Commons Protein-Protein Interactions	1.0	null
WM2664	CCLE Cell Line Gene Expression Profiles	-1.0	-1.50555
Trigeminal ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.764
Brain Lower Grade Glioma_LGG_TCGA-DU-7290-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cochlear hair cell degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
Autosomal recessive nonsyndromic deafness 36	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
GSE152432_9_v_4_zrsr2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GATA2-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
transporter activity	GO Molecular Function Annotations 2015	1.0	null
Autosomal recessive nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.207
nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Anterior group of the dorsal thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.43043
HIST1H4F	Pathway Commons Protein-Protein Interactions	1.0	null
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.9167
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR	Rummagene Transcription Factor Associations 2026	1.0	null
TAF15	Pathway Commons Protein-Protein Interactions	1.0	null
TCF7-22412390-EML-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.786803
intracellular non-membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.16935
Autosomal recessive nonsyndromic deafness 48	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.697
NANOG	ChEA Transcription Factor Targets	1.0	null
Tentacle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.792
Neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.626
growth abnormality	GWASdb SNP-Phenotype Associations	1.0	0.292172
cell surface	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
Autosomal recessive nonsyndromic deafness 63	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.519
carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.069414
abnormal touch/ nociception	MPO Gene-Phenotype Associations	1.0	null
LMNB1_02_195	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60407
ventrolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.956714
GTEX-R55G-1026-SM-48FDI	GTEx Tissue Sample Gene Expression Profiles	1.0	2.08579
TARDBP	Pathway Commons Protein-Protein Interactions	1.0	null
single-organism process	GO Biological Process Annotations 2015	1.0	null
functional abnormality of the inner ear	HPO Gene-Disease Associations	1.0	null
NANOG-16153702-HESC-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
MKN-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06337
WDR5	Pathway Commons Protein-Protein Interactions	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.903625
PRDX1	Pathway Commons Protein-Protein Interactions	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE201657_0_v_1_ash2l_human	RummaGEO Gene Perturbation Signatures	1.0	null
Osteochondrodysplasia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
only	GeneRIF Biological Term Annotations	1.0	null
GATA2	ChEA Transcription Factor Targets	1.0	null
abnormal scala media morphology	MPO Gene-Phenotype Associations	1.0	null
RPL12	Pathway Commons Protein-Protein Interactions	1.0	null
pineal body	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.64087
abnormality of the gastrointestinal tract	GWASdb SNP-Phenotype Associations	1.0	0.139072
Stereocilia tip-link density	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.31
PANC0213	CCLE Cell Line Gene CNV Profiles	1.0	1.62331
central nuclear group	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.948409
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.378
SNRPG	Pathway Commons Protein-Protein Interactions	1.0	null
RSL1D1	Pathway Commons Protein-Protein Interactions	1.0	null
MAFK	ENCODE Transcription Factor Targets	1.0	null
AK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.13341
medial habenular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.90676
cation channel activity	GO Molecular Function Annotations 2015	1.0	null
abnormal glucose homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.221
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.974937
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-3158-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
noncoding	GeneRIF Biological Term Annotations	1.0	null
GTEX-T6MN-0011-R2A-SM-32QOW	GTEx Tissue Sample Gene Expression Profiles	1.0	0.848404
hsa-miR-760	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Medulla oblongata	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.0
myopathy	GWASdb SNP-Disease Associations	1.0	0.692747
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1855
DAUDI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SOX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.1822
Medial habenula	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.8494
SOX2-16153702-HESC-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
MAP2K1_knockdown_134_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.93195
GTPBP4	Pathway Commons Protein-Protein Interactions	1.0	null
GSE196117_6_v_8_clarithromycin_human	RummaGEO Drug Perturbation Signatures	1.0	null
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14129
gastric cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.19311
REST-18959480-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
abnormal inner ear vestibule morphology	MPO Gene-Phenotype Associations	1.0	null
ALDH3A2	Pathway Commons Protein-Protein Interactions	1.0	null
NRF2-31884422-A549-HUMAN-LUNG-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.0008
A4 noradrenergic cell group	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.32172
GTEX-VJYA-0726-SM-4KL1T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.06938
leukemia	GWASdb SNP-Disease Associations	1.0	0.355564
hodgkin's lymphoma, nodular sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.2656
NCI-H146	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910204
HT-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21024
Subiculum, dorsal part, stratum radiatum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04186
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A45X-01A-21R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastrointestinal system cancer	GWASdb SNP-Disease Associations	1.0	0.196758
Mafb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	20.5641
UBA5	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-QVUS-0226-SM-3GIJY	GTEx Tissue Sample Gene Expression Profiles	1.0	0.948588
PMC13187244-41392_2026_2766_MOESM2_ESM.xlsx-Table_S17-Table_S17_Differentially_expressed_genes_in_OCI-AML3_cells_ZMIZ1_inhibitor_SIH-001_4E_vs_DMSO_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4846
hsa-miR-4486	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.438
plasma membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
rostral subdivision of paraventricular nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.826576
HCC2998	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CCT6A	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-GV-A3JW-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE248858_1_v_7_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
epidermodysplasia verruciformis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.743547
Specific developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.427
Polygenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.341
RANBP2	Pathway Commons Protein-Protein Interactions	1.0	null
Terminal web	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.657
superficial stratum of the Fc	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.06617
AR-25329375-VCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
DDX3X	Pathway Commons Protein-Protein Interactions	1.0	null
MEF2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.0398
Cell projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
GSE135350_2_v_7_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE119978,GSE180930_0_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
cochlear degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DB-A4X9-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal auditory brainstem response	MPO Gene-Phenotype Associations	1.0	null
hippocampus (hippocampal formation)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.34827
Autosomal recessive nonsyndromic deafness 84A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
GTEX-OIZH-0626-SM-3NB1L	GTEx Tissue Sample Gene Expression Profiles	1.0	1.806
Anteroventral nucleus of thalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34268
Stereocilia ankle link	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.41
abnormality of metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.051508
HMEEC cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.711
Sox3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.0777
caudal ganglionic eminence	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.976548
SF3B4	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-8191-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-S4Q7-0926-SM-4AD5D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.32765
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4074
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
detection of mechanical stimulus involved in sensory perception of sound	GO Biological Process Annotations 2023	1.0	null
FOXP1	ChEA Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KK-A7AU-01A-11R-A32O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4708-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
layer VI of area 35c	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.42197
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.065
Phycobiont	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.72
Perturb_8898_KD_IGF2BP1_SRP359044	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	2.82797
gastric adenocarcinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.12881
single-organism transport	GO Biological Process Annotations 2015	1.0	null
Ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.866
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-645-ENSG00000274349_ZNF658	Rummagene Transcription Factor Associations 2026	1.0	null
Sexine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.381
Peripheral ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.178
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
CTV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-N7MT-1926-SM-3LK5N	GTEx Tissue Sample Gene Expression Profiles	1.0	0.829527
primary somatosensory cortex (area S1, areas 3,1,2)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.97284
SNRPC	Pathway Commons Protein-Protein Interactions	1.0	null
GSE220600_1_v_2_clpp_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Cation channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.605
PMC9643473-Table1.xls-MAF_0_005-HGVS_gene_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
linkage	GeneRIF Biological Term Annotations	1.0	null
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-34-5927-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TTLL9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.31059
Cochlear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.603
Mature stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.324
GTEX-PWN1-0626-SM-48TDT	GTEx Tissue Sample Gene Expression Profiles	1.0	2.2189
U2AF1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE216043_3_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A4F8-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8256367__F3	PFOCR Pathway Figure Associations 2024	1.0	null
HIST1H1C	Pathway Commons Protein-Protein Interactions	1.0	null
PRDX2	Pathway Commons Protein-Protein Interactions	1.0	null
american	GeneRIF Biological Term Annotations	1.0	null
PANC0813	DepMap CRISPR Gene Dependency	1.0	6.56216
MARS	Pathway Commons Protein-Protein Interactions	1.0	null
MAFK_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.852827
Autosomal dominant nonsyndromic deafness 22	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.312
Acute Myeloid Leukemia_LAML_TCGA-AB-2913-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
r1 roof plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.58322
hearing	GeneRIF Biological Term Annotations	1.0	null
Reticular dysgenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
KRT6A	Pathway Commons Protein-Protein Interactions	1.0	null
PLOD3	Pathway Commons Protein-Protein Interactions	1.0	null
ETV2-25802403-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
RPS4X	Pathway Commons Protein-Protein Interactions	1.0	null
Arid3a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.6667
RTN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60959
Brain Lower Grade Glioma_LGG_TCGA-HT-7602-01A-21R-2090-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A6TC-01A-21R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NH-12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
x chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.268603
GSE233049_1_v_3_atf3_human	RummaGEO Gene Perturbation Signatures	1.0	null
PRDX3	Pathway Commons Protein-Protein Interactions	1.0	null
Stereocilium membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.949
Stereocilia coupling link	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.387
SNU601	DepMap CRISPR Gene Dependency	1.0	2.85462
medial tuberal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.09182
RPL8	Pathway Commons Protein-Protein Interactions	1.0	null
GSE141328_3_v_2_rock2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
acute leukemia	GWASdb SNP-Phenotype Associations	1.0	0.366521
GTEX-WHSE-0011-R6A-SM-3P5ZP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.95747
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.80359
parietal neocortex_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.831571
iranian	GeneRIF Biological Term Annotations	1.0	null
abnormality of cells of the monocyte/macrophage lineage	GWASdb SNP-Phenotype Associations	1.0	0.676616
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9636
ion transport	GO Biological Process Annotations 2015	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.22826
mantle zone of r7BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.3286
Neural ectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.809
SDHA	Pathway Commons Protein-Protein Interactions	1.0	null
Fastigial nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15736
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0573
SMZ1	DepMap CRISPR Gene Dependency	1.0	6.3258
RPL4	Pathway Commons Protein-Protein Interactions	1.0	null
Paragigantocellular reticular nucleus, lateral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36974
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3263
Lateral part of cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.379
ZNF217-24962896-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
coding	GeneRIF Biological Term Annotations	1.0	null
RPL3	Pathway Commons Protein-Protein Interactions	1.0	null
A204	CCLE Cell Line Gene Expression Profiles	-1.0	-1.51855
GTEX-S4UY-0926-SM-4AD6O	GTEx Tissue Sample Gene Expression Profiles	1.0	1.70604
HS604T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.83656
GTEX-U4B1-1526-SM-4DXSL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.3247
Scolopale cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.056
GTEX-PLZ6-1126-SM-3P5ZR	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18281
acquired metabolic disease	GWASdb SNP-Disease Associations	1.0	0.184713
Distal tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.93
GTEX-OIZI-0126-SM-3NB13	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16703
gastrointestinal tract	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.090924
abnormal stationary movement	MPO Gene-Phenotype Associations	1.0	null
voltage-gated calcium channel activity	GO Molecular Function Annotations 2023	1.0	null
nervous system disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
abnormal somatic nervous system physiology	MPO Gene-Phenotype Associations	1.0	null
Blood platelet	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	2.067
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8324
abnormal eye size	MPO Gene-Phenotype Associations	1.0	null
inferolateral temporal cortex (area TEv, area 20)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05043
DAN-G	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1118
r8 part of the paragigantocellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.03722
SCAMP5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03257
GSE84922,GSE84924_4_v_1_sall4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
GSE216043_7_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.361
cell development	GO Biological Process Annotations 2015	1.0	null
inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.99109
GSE133927_1_v_0_meox1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
KRT6C	Pathway Commons Protein-Protein Interactions	1.0	null
DU-145	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1675
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.768197
AP-1	MotifMap Predicted Transcription Factor Targets	1.0	null
Autosomal dominant nonsyndromic deafness 10	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.749
hsa-miR-585	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
abnormal stria vascularis morphology	MPO Gene-Phenotype Associations	1.0	null
subthalamic nucleus (migrated)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.11494
tobacco use disorder	GAD Gene-Disease Associations	1.0	null
ZNF621	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43081
Prostate adenocarcinoma_PRAD_TCGA-HC-A8CY-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal recessive nonsyndromic deafness 77	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.657
intron	GeneRIF Biological Term Annotations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1ZA-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Autosomal recessive nonsyndromic deafness 21	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.482
GSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3481
type ii diabetes mellitus	GWASdb SNP-Phenotype Associations	1.0	0.676616
posterior part of Int	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.04673
Gill arch	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.59
ZNF789	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34223
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8619
GTEX-O5YT-1626-SM-32PK6	GTEx Tissue Sample Gene Expression Profiles	1.0	0.979333
layer 2 of FCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.06046
FLG2	Pathway Commons Protein-Protein Interactions	1.0	null
RPS10	Pathway Commons Protein-Protein Interactions	1.0	null
BT474	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.22588
Primary somatosensory area, lower limb, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.79954
Stereocilia ankle link complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.41
gland	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
compound	GeneRIF Biological Term Annotations	1.0	null
response to abiotic stimulus	GO Biological Process Annotations 2015	1.0	null
ILF2	Pathway Commons Protein-Protein Interactions	1.0	null
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.311
spine apparatus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.37505
ACHN	CCLE Cell Line Gene Expression Profiles	-1.0	-1.49217
GTEX-RVPU-0011-R5A-SM-2XCAD	GTEx Tissue Sample Gene Expression Profiles	1.0	0.996582
GSE234340_3_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
SNU489	CCLE Cell Line Gene CNV Profiles	1.0	1.39754
increased or absent threshold for auditory brainstem response	MGI Mouse Phenotype Associations 2023	1.0	null
PMC4728380-ncomms10153-s8.xlsx-MYC_binding_intensity_ALL-Unnamed_15_MYC	Rummagene Transcription Factor Associations 2026	1.0	null
TBC1D2B	Pathway Commons Protein-Protein Interactions	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.4231
Autosomal recessive nonsyndromic deafness 67	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.638
Myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.313
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4211
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8495
NERF2-26677805-CHIP-SEQ-MACROPHAGESS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Cuticular plate	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.504
SMC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.61464
RPS16	Pathway Commons Protein-Protein Interactions	1.0	null
Auditory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	3.335
cellular process	GO Biological Process Annotations 2015	1.0	null
GTEX-T2IS-1926-SM-4DM74	GTEx Tissue Sample Gene Expression Profiles	1.0	0.846087
GSE111247_11_v_4_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.06335
Adrenocortical carcinoma_ACC_TCGA-OR-A5JO-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ASH2L-23239880-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Bony labyrinth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.92
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7072
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5694
GSE207787_3_v_2_pdha1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
496100582_HIP_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07974
bone disease	GWASdb SNP-Disease Associations	1.0	0.142677
RBM4B	Pathway Commons Protein-Protein Interactions	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7177-11A-01R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Orbital area, lateral part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.0629
Stereocilia tip link	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.373
KLF5-20875108-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
abnormal cochlea morphology	MPO Gene-Phenotype Associations	1.0	null
RCN2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE158834_10_v_6_palm_human	RummaGEO Gene Perturbation Signatures	1.0	null
HK2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53029
RTCB	Pathway Commons Protein-Protein Interactions	1.0	null
dorsolateral prefrontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.49552
GTEX-S7SE-0326-SM-4AT5Q	GTEx Tissue Sample Gene Expression Profiles	1.0	1.36844
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.8488
PDCD6	Pathway Commons Protein-Protein Interactions	1.0	null
r7 part of the basointermediate reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08481
icSARS CoV_12Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-0.697912
cerebellar cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.31055
Cortical actin cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.864
ETV2::HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6195
ID1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40117
REST-18959480-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3K_Peaks_wtYAP1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.994089
GTEX-S4Q7-1026-SM-4AD75	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39507
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9243
disease	GWASdb SNP-Disease Associations	1.0	0.052195
esophageal neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.394321
sc-m1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.05033
Bed nucleus of the anterior commissure	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.29517
NUGC-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.90811
GSE205729,GSE205731_2_v_1_tazemetostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
ATG16L1	Pathway Commons Protein-Protein Interactions	1.0	null
H2AFZ_osteoblast_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
KYSE-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25826
cochlear duct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.98631
RUNX2	ChEA Transcription Factor Targets	1.0	null
SLFN12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.05414
FOXP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04265
PMC10684515-41467_2023_43264_MOESM7_ESM.xlsx-HOXA9_ChIP-seq_peaks_in_SEM-Closest_Gene_HOXA9	Rummagene Transcription Factor Associations 2026	1.0	null
acute leukemia	GWASdb SNP-Disease Associations	1.0	0.609395
DLST	Pathway Commons Protein-Protein Interactions	1.0	null
MAPK1_knockdown_131_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.78028
ASH2L	ChEA Transcription Factor Targets	1.0	null
CMAH_KO_GDS4770_420_mouse_muscle	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
TSPAN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45428
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6061
SRSF11	Pathway Commons Protein-Protein Interactions	1.0	null
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3M_Peaks_YAP1MAMLD1_TEAD4-Unnamed_14_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
CALU6	CCLE Cell Line Gene Expression Profiles	-1.0	-1.54782
mediodorsal nucleus of thalamus_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05814
abnormal cochlear hair cell morphology	MPO Gene-Phenotype Associations	1.0	null
HOXA7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2091
Retrosplenial area, dorsal part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.39508
basomedial amygdaloid nucleus, posterior part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.06619
SCA7_Knock-in_GDS3545_560_mouse_Cerebellum	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
X-linked deafness 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.948
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table3_WBBC_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
PABPC4	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal dominant nonsyndromic deafness 4B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.01
cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
GSE57397,GSE57399_1_v_0_fbxw7_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF638	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table4_gnomAD_EAS_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.205399
single-organism developmental process	GO Biological Process Annotations 2015	1.0	null
VAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14743
NEDD4	Pathway Commons Protein-Protein Interactions	1.0	null
Cluster of actin-based cell projections	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.001
GSE84148,GSE96938_0_v_2_nrros_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
superficial stratum of DTTh	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.1885
SR786	CCLE Cell Line Gene Expression Profiles	1.0	1.43823
superficial stratum of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.62094
TRAP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE120595_0_v_4_arid2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
hematologic cancer	GWASdb SNP-Disease Associations	1.0	0.185373
detection of external stimulus	GO Biological Process Annotations 2015	1.0	null
common	GeneRIF Biological Term Annotations	1.0	null
Modiolus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.518
Retrosplenial area, ventral part, layer 2	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.72992
HNRNPL	Pathway Commons Protein-Protein Interactions	1.0	null
calcium channel activity	GO Molecular Function Annotations 2025	1.0	null
RPS23	Pathway Commons Protein-Protein Interactions	1.0	null
DLX5_KO_GSE22381_5_mouse_ear (otic vesicle)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
SRSF4	Pathway Commons Protein-Protein Interactions	1.0	null
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
GTEX-Q2AI-1126-SM-48U19	GTEx Tissue Sample Gene Expression Profiles	1.0	0.873482
hsa-miR-4435	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.1658
CSNK1A1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01348
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857177
TCP1	Pathway Commons Protein-Protein Interactions	1.0	null
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3799
Tympanum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.172
JUN-26020271-SMOOTH-MUSCLE-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MALME3M	DepMap CRISPR Gene Dependency	1.0	2.29208
autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.048001
RBBP5	ENCODE Transcription Factor Targets	1.0	null
PMC4149371-pone.0105180.s010.xls-NANOG-GENE_NANOG	Rummagene Transcription Factor Associations 2026	1.0	null
homozygous	GeneRIF Biological Term Annotations	1.0	null
calcium ion transmembrane transporter activity	GO Molecular Function Annotations 2025	1.0	null
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.1928
HCT-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Perturb_4251_OE_PEG10_SRP309838	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-2.44845
DSN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29103
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
Nasopharyngeal Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
abnormal hair cell mechanoelectric transduction	MPO Gene-Phenotype Associations	1.0	null
SNRPD2	Pathway Commons Protein-Protein Interactions	1.0	null
Brown-Vialetto-Van Laere syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SK-UT-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CHEK1_knockdown_136_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.44559
Head and Neck squamous cell carcinoma_HNSC_TCGA-CR-6477-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5896
TFAP2C	ChEA Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HW-7493-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-T6MN-0011-R9A-SM-32QOZ	GTEx Tissue Sample Gene Expression Profiles	1.0	1.13108
RERF-LC-OK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910204
Anterior cingulate area, dorsal part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.74686
GRWD1	Pathway Commons Protein-Protein Interactions	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.278
GRPEL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40316
KRT10	Pathway Commons Protein-Protein Interactions	1.0	null
reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
parabigeminal nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.95807
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.273
YAE1D1	Pathway Commons Protein-Protein Interactions	1.0	null
SMAD3-21741376-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-XGQ4-2026-SM-4AT6G	GTEx Tissue Sample Gene Expression Profiles	1.0	1.30444
RPL34	Pathway Commons Protein-Protein Interactions	1.0	null
esophageal carcinoma	GWASdb SNP-Phenotype Associations	1.0	1.15033
GTEX-R55D-0126-SM-48FEL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.11101
sensorineural hearing loss	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.58136
Anterior cingulate area	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.25771
BICR 78	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34409
Cell body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.821
r7 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.73683
abnormality of bone marrow cell morphology	GWASdb SNP-Phenotype Associations	1.0	0.221
PMC10661700-41525_2023_383_MOESM2_ESM.xlsx-Supp_Table8_gnomAD_AFR_GCR-SYMBOL_NR3C1	Rummagene Transcription Factor Associations 2026	1.0	null
rostral division of VL	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.97099
PMC8724844-bt-30-1-98-supple2.xlsx-GO_BP-TFAP4_TFAP4	Rummagene Transcription Factor Associations 2026	1.0	null
vomeralnasalorgan.VMO.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.73534
PFN2	Pathway Commons Protein-Protein Interactions	1.0	null
POLDIP3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.10398
neuron development	GO Biological Process Annotations 2015	1.0	null
KDM4D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16393
northeast	GeneRIF Biological Term Annotations	1.0	null
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.08869
Brain Lower Grade Glioma_LGG_TCGA-DU-8158-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3234
LHX1_NULL MUTATION - Ablation_GDS1748_749_mouse_Embryonic kidneys (from day E18.5)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5LJ-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KRT85	Pathway Commons Protein-Protein Interactions	1.0	null
related	GeneRIF Biological Term Annotations	1.0	null
superficial stratum of r9BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.94963
mantle zone of r7BL	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.01074
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.062
orbital frontal cortex_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.971672
Presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.533
RPL18	Pathway Commons Protein-Protein Interactions	1.0	null
PMC8724844-bt-30-1-98-supple2.xlsx-GO_BP-SP1_SP1	Rummagene Transcription Factor Associations 2026	1.0	null
SOX2-16153702-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Goiter	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.483
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
WNK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14246
anterior tegmental nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.14556
Autosomal dominant nonsyndromic deafness 28	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.141
primary motor-sensory cortex (samples)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.959025
Cardiac Failure_Myocardial tissue_GSE1988	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.29594
RPL28	Pathway Commons Protein-Protein Interactions	1.0	null
detection of mechanical stimulus	GO Biological Process Annotations 2015	1.0	null
GTEX-PLZ4-1626-SM-3P618	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21506
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8F_Het1A-GATA6_2d_5x_closed-Nearest_Ensembl_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
ATP5A1	Pathway Commons Protein-Protein Interactions	1.0	null
Retinitis pigmentosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.761
GSE48812_4_v_6_sulforaphane_human	RummaGEO Drug Perturbation Signatures	1.0	null
Dux	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.9876
supraoptic nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.914758
immune system cancer	GWASdb SNP-Disease Associations	1.0	0.185373
medial part of r8B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.76783
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7051-11A-02R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5891-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
RPL7A	Pathway Commons Protein-Protein Interactions	1.0	null
GSE217694_4_v_0_pold1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-HD-A6HZ-11A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A5W6-01A-11R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061329
Optic atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
SRSF5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25033
medial part of r7B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.32911
Otitis media	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.181
r6 part of paragigantocellular nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.05505
JHOC5	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52264
GTEX-PWCY-0726-SM-48TCS	GTEx Tissue Sample Gene Expression Profiles	1.0	1.47014
source	GeneRIF Biological Term Annotations	1.0	null
Epidermodysplasia verruciformis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.943
CADOES1	CCLE Cell Line Gene Expression Profiles	-1.0	-2.4373
VZ in midlateral temporal cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.15975
GSE134214_0_v_1_ell2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
abnormal mechanoreceptor morphology	MPO Gene-Phenotype Associations	1.0	null
ENDOU	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12259
EIF2AK2	Pathway Commons Protein-Protein Interactions	1.0	null
external granular (germinal) layer of lower rhombic lip	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.941412
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.34736
UACC812	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.775705
inner hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.46775
MAFK_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
abnormality of the skeletal system	GWASdb SNP-Phenotype Associations	1.0	0.057561
GTEX-QEG4-0126-SM-48TZE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.18733
GTEX-WFG8-1926-SM-4LVM1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.31746
neoplasm	GWASdb SNP-Phenotype Associations	1.0	0.09377
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-4735-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Declive (VI)	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.18444
reported	GeneRIF Biological Term Annotations	1.0	null
abnormal axial skeleton morphology	GWASdb SNP-Phenotype Associations	1.0	0.158439
HNF4A-19822575-HepG2-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.2767
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.72158
ZNF257	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.3228
HNRNPH1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-OIZG-1026-SM-3LK5X	GTEx Tissue Sample Gene Expression Profiles	1.0	1.55035
dutch	GeneRIF Biological Term Annotations	1.0	null
LS-411N	COSMIC Cell Line Gene Mutation Profiles	1.0	null
nervous system phenotype	MPO Gene-Phenotype Associations	1.0	null
Perilymphatic space	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.86
ALYREF	Pathway Commons Protein-Protein Interactions	1.0	null
MRPL55	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26409
RPS19	Pathway Commons Protein-Protein Interactions	1.0	null
ICC2	DepMap CRISPR Gene Dependency	1.0	8.03022
Leaf sheath	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.596
CARS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02812
SW1990	DepMap CRISPR Gene Dependency	1.0	4.62301
HCC515	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.857177
KRT2	Pathway Commons Protein-Protein Interactions	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06337
ADAD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18039
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.4478
stereocilium bundle tip	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
GTEX-PWOO-2326-SM-2S1PQ	GTEx Tissue Sample Gene Expression Profiles	1.0	0.87829
VAL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14296
Epithalamus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.76921
GTEX-XLM4-1526-SM-4AT6D	GTEx Tissue Sample Gene Expression Profiles	1.0	1.3574
FOXE1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.8865
abnormal Deiters cell morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Tongue epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.973
abnormality of the esophagus	GWASdb SNP-Phenotype Associations	1.0	0.360942
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A3X1-01A-12R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
autosomal dominant nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.05639
nonsyndromic	GeneRIF Biological Term Annotations	1.0	null
GSE222500,GSE222501_1_v_0_tet3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
abnormal tectorial membrane morphology	MGI Mouse Phenotype Associations 2023	1.0	null
marrow cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.042717
CLTCL1	Pathway Commons Protein-Protein Interactions	1.0	null
hippocampus (hippocampal formation)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.921724
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.1481
FTO	Pathway Commons Protein-Protein Interactions	1.0	null
KRT82	Pathway Commons Protein-Protein Interactions	1.0	null
ESRRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4666
MFGE8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23829
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6968
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.915696
GSE232631_0_v_2_brca2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Developmental and epileptic encephalopathy 58	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.32
posteroventral (inferior) parietal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.875061
ISTMEL1	DepMap CRISPR Gene Dependency	1.0	7.43442
COR-L32	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE199660_1_v_0_secretin_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
STRBP	Pathway Commons Protein-Protein Interactions	1.0	null
Stria vascularis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.438
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9403
deafness	MGI Mouse Phenotype Associations 2023	1.0	null
unresponsive to tactile stimuli	MPO Gene-Phenotype Associations	1.0	null
D341Med	DepMap CRISPR Gene Dependency	1.0	2.94089
FOXP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.90447
X-linked recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.238
BFTC-909	COSMIC Cell Line Gene Mutation Profiles	1.0	null
epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.065871
organ system cancer	GWASdb SNP-Disease Associations	1.0	0.109164
TUBB	Pathway Commons Protein-Protein Interactions	1.0	null
NB5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A4F9-06A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-WFON-1626-SM-4LVMV	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23707
ESET-19884257-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6979
AZGP1	Pathway Commons Protein-Protein Interactions	1.0	null
CACO2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.87912
Autosomal recessive nonsyndromic deafness 22	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.884
TFAP2C-20629094-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Usher syndrome type 1G	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.576
TIA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42744
ACTA2	Pathway Commons Protein-Protein Interactions	1.0	null
CTPS1	Pathway Commons Protein-Protein Interactions	1.0	null
voltage-gated calcium channel activity	GO Molecular Function Annotations 2025	1.0	null
monoatomic ion channel activity	GO Molecular Function Annotations 2025	1.0	null
PPARA-22158963-LIVER-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
AR	ChEA Transcription Factor Targets	1.0	null
MAFA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7242
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.56434
Middle ear disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
KRT35	Pathway Commons Protein-Protein Interactions	1.0	null
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.9812
PMC7378272-mmc3.docx-0-SIX1_SIX1	Rummagene Transcription Factor Associations 2026	1.0	null
MARVELD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50759
SERBP1	Pathway Commons Protein-Protein Interactions	1.0	null
auditory receptor cell development	GO Biological Process Annotations 2015	1.0	null
Blood protein disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.043
layer III of piriform cortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-0.870043
Sox7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.0662
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.27249
developmental process	GO Biological Process Annotations 2015	1.0	null
MITF-21258399-MELANOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC6420765-12864_2019_5550_MOESM4_ESM.xlsx-R_D4_vs_D9-gene_id_x_CENPX	Rummagene Transcription Factor Associations 2026	1.0	null
ear	GeneRIF Biological Term Annotations	1.0	null
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.381755
GTEX-RN64-2326-SM-48FDW	GTEx Tissue Sample Gene Expression Profiles	1.0	1.14799
HOXB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5698
PRDX4	Pathway Commons Protein-Protein Interactions	1.0	null
SKNMC	DepMap CRISPR Gene Dependency	1.0	4.53341
subparafascicular nucleus of thalamus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.97099
limitans nucleus	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.10793
spanning component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.18389
Skin Cutaneous Melanoma_SKCM_TCGA-GN-A26A-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Nfe2l2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	28.6515
SETDB1-19884257-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
sex chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.111645
Brain Lower Grade Glioma_LGG_TCGA-HT-7884-01B-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3163	TargetScan Predicted Conserved microRNA Targets	1.0	0.714812
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
NCK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10321
DDX1	Pathway Commons Protein-Protein Interactions	1.0	null
FUS	Pathway Commons Protein-Protein Interactions	1.0	null
GSE48812_9_v_6_sulforaphane_human	RummaGEO Drug Perturbation Signatures	1.0	null
Stereocilium tip	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.015
ventrolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.986562
GSE95077_1_v_0_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
Myelencephalon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.993
ATP6V1G2	Pathway Commons Protein-Protein Interactions	1.0	null
Hair	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.099
CAL120	CCLE Cell Line Gene Expression Profiles	-1.0	-1.75446
abnormal inner ear morphology	MPO Gene-Phenotype Associations	1.0	null
SLC25A5	Pathway Commons Protein-Protein Interactions	1.0	null
cause	GeneRIF Biological Term Annotations	1.0	null
RPS8	Pathway Commons Protein-Protein Interactions	1.0	null
Wolfram syndrome 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.174
ESR1-26153859-T47D-HUMAN-BREAST-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
abnormal scala media morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Microvillar actin bundle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.584
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9265
GTEX-U8XE-0126-SM-4E3I3	GTEx Tissue Sample Gene Expression Profiles	1.0	1.44455
neuron part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.048009
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.0741
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
layer 1 of CCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.3353
layer 1 of RSC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.35336
sensory system disease	DISEASES Curated Gene-Disease Association Evidence Scores	1.0	null
Apical part of cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.3
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	1.07254
ANLN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58428
Brain Lower Grade Glioma_LGG_TCGA-RY-A845-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
enlarged vestibular aqueduct	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.780251
GSE148262,GSE150691_3_v_2_hdlbp_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNRNPC	Pathway Commons Protein-Protein Interactions	1.0	null
reflex	GO Biological Process Annotations 2015	1.0	null
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-RT4-FOXA1_peaks_Context1_2-Gene_Name_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
DEF6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.05726
Y-linked deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.352
Apical complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.308
Lung squamous cell carcinoma_LUSC_TCGA-37-A5EL-01A-11R-A26W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE148096_1_v_0_erlotinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
GTEX-NFK9-1126-SM-3LK78	GTEx Tissue Sample Gene Expression Profiles	1.0	1.51052
Gustatory areas, layer 4	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.29217
olfactory bulb	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.53776
NCI-H2228	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23777
LS513	CCLE Cell Line Gene Expression Profiles	1.0	1.86425
Retrosplenial area, ventral part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.54067
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.229176
hippocampus (hippocampal formation)_23 yrs_M_12300	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17267
CCT2	Pathway Commons Protein-Protein Interactions	1.0	null
Pyramus (VIII), granular layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.47125
PMC9950457-mmc3.xlsx-GRHL2_overexpression_DOWN-gene_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6655
EGI-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Cytoskeleton of presynaptic active zone	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.557
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8617
TCTN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50321
ventrolateral prefrontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.828842
GTEX-TML8-1126-SM-4DXSS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.926381
abnormal cochlear ganglion morphology	MPO Gene-Phenotype Associations	1.0	null
periventricular stratum of r5BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.2498
abnormal pinna reflex	MPO Gene-Phenotype Associations	1.0	null
cation transport	GO Biological Process Annotations 2015	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
detection of mechanical stimulus involved in sensory perception of sound	GO Biological Process Annotations 2025	1.0	null
GTEX-XPVG-2226-SM-4B65U	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08104
POLR2E	Pathway Commons Protein-Protein Interactions	1.0	null
HNRNPK	Pathway Commons Protein-Protein Interactions	1.0	null
OPM2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52842
Lung squamous cell carcinoma_LUSC_TCGA-56-8309-01A-11R-2296-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal tectorial membrane morphology	MPO Gene-Phenotype Associations	1.0	null
esophagus_5c	HPA Tissue Sample Gene Expression Profiles	1.0	1.30982
RPS9	Pathway Commons Protein-Protein Interactions	1.0	null
ABC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RPL10L	Pathway Commons Protein-Protein Interactions	1.0	null
HOXB13-26457646-LNCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
NIPSNAP1	Pathway Commons Protein-Protein Interactions	1.0	null
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976094
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3668
FOXA1-27270436-LNCAP-HUMAN-PROSTATE-CARCINOMA	ChEA Transcription Factor Targets 2022	1.0	null
layer 6a of PrS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01792
stereotypic behavior	MPO Gene-Phenotype Associations	1.0	null
Meningitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.093
ZNF157	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6604
Field CA2, pyramidal layer	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01674
spleen	HPA Tissue Gene Expression Profiles	-1.0	-0.991974
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4377
PMC7397849-supp_gad.338681.120_Supplemental_Table_S3.xlsx-S3N_Peaks_YAP1FAM118B_TEAD4-Unnamed_11_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE128634,GSE128636_2_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
EEF1A2	Pathway Commons Protein-Protein Interactions	1.0	null
Sarcoma_SARC_TCGA-Z4-A9VC-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DDX5	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal dominant nonsyndromic hearing loss	ClinVar Gene-Phenotype Associations 2025	1.0	null
MOV10	Pathway Commons Protein-Protein Interactions	1.0	null
deafness	GeneRIF Biological Term Annotations	1.0	null
r8 part of inferior olive	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.65755
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21024
EFTUD2	Pathway Commons Protein-Protein Interactions	1.0	null
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
Myosin VII complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.671
C2BBE1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20657
PAIP2	Pathway Commons Protein-Protein Interactions	1.0	null
hair	GeneRIF Biological Term Annotations	1.0	null
PMC10353540-Table_1.xlsx-HCC1954_AR_vs_HCC1954_A-Gene_Name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Sensory processing of sound	Reactome Pathways 2024	1.0	null
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2349
inner ear receptor cell development	GO Biological Process Annotations 2015	1.0	null
HAP-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.635
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
SUP-B8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
lateral tuberal nuclei	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	2.4012
GTEX-SNOS-1126-SM-4DM67	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21236
account	GeneRIF Biological Term Annotations	1.0	null
autosomal recessive nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.45924
Connective tissue disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
KAP1-22055183-ESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Hearing Impairment	DisGeNET Gene-Phenotype Associations	1.0	null
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9085
lateral (dentate) cerebellar nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.01674
Autosomal dominant nonsyndromic deafness 25	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.006
ANKFY1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S4P3-0426-SM-4AD56	GTEx Tissue Sample Gene Expression Profiles	1.0	0.920991
SGTB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33257
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
vestibular reflex	GO Biological Process Annotations 2023	1.0	null
Disease of anatomical entity	DISEASES Curated Gene-Disease Association Evidence Scores 2025	1.0	4.0
ACAT1	Pathway Commons Protein-Protein Interactions	1.0	null
Toxic labyrinthitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.075
Rectum adenocarcinoma_READ_TCGA-AG-4021-01A-01R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS888T	CCLE Cell Line Gene Expression Profiles	-1.0	-2.2175
ENO1	Pathway Commons Protein-Protein Interactions	1.0	null
r1 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.37822
Molybdopterin cofactor (Moco) biosynthesis adenylyltransferase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.917
RNF213	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19518
Cranial nerve disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
KMS-12-PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23777
USP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57995
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
19286929-SuppTable2h	GeneSigDB Published Gene Signatures	1.0	null
NKX2-8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4945
C1QBP	Pathway Commons Protein-Protein Interactions	1.0	null
intrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.132778
substantianigra	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.984524
HSF1_01_155	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.58496
intermediate stratum of r7BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08426
GSE234340_10_v_7_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.060494
SLC25A3	Pathway Commons Protein-Protein Interactions	1.0	null
AKT1_knockdown_135_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.40138
DHX15	Pathway Commons Protein-Protein Interactions	1.0	null
superficial stratum of r8BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.03703
layer 3 of CCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.46811
ATG4B	Pathway Commons Protein-Protein Interactions	1.0	null
arose	GeneRIF Biological Term Annotations	1.0	null
GTEX-SNMC-0826-SM-4DM66	GTEx Tissue Sample Gene Expression Profiles	1.0	2.0454
SHROOM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0507
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A51G-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cochlear ganglion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.489
hsa-miR-330-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
Lung adenocarcinoma_LUAD_TCGA-05-4384-01A-01R-1755-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormality of body weight	GWASdb SNP-Phenotype Associations	1.0	0.35645
Peripheral nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.029
TRIM41	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22542
obesity	GWASdb SNP-Phenotype Associations	1.0	0.847125
HNRNPF	Pathway Commons Protein-Protein Interactions	1.0	null
SNU738	DepMap CRISPR Gene Dependency	1.0	2.4906
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4326
Foxl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	27.6555
dorsolateral prefrontal cortex_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.70079
GTEX-S4Q7-0626-SM-4AD5M	GTEx Tissue Sample Gene Expression Profiles	1.0	2.79734
layer IIIu of area 35r	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	-1.0	-1.49087
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.11587
GTEX-PW2O-1426-SM-48TCD	GTEx Tissue Sample Gene Expression Profiles	1.0	1.77463
TTBK2	Pathway Commons Protein-Protein Interactions	1.0	null
esophagus	GTEx Tissue Gene Expression Profiles	1.0	0.906075
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
obesity	GWASdb SNP-Disease Associations	1.0	0.961634
H3K9me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
substrate-specific channel activity	GO Molecular Function Annotations 2015	1.0	null
Sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.793
NCBP1	Pathway Commons Protein-Protein Interactions	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.25429
MED30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.63018
ELAVL1	Pathway Commons Protein-Protein Interactions	1.0	null
MED15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19572
MZT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.47485
HEV_60Day_None_GSE53731	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.69164
Autosomal dominant nonsyndromic deafness 23	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.282
COV362	CCLE Cell Line Gene Expression Profiles	1.0	2.81475
vision/eye phenotype	MPO Gene-Phenotype Associations	1.0	null
PLEKHG3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52276
ZR751	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.722285
GTEX-T6MN-0011-R6A-SM-32QP8	GTEx Tissue Sample Gene Expression Profiles	1.0	0.833323
abnormal somatic sensory system morphology	MPO Gene-Phenotype Associations	1.0	null
GTEX-U4B1-0826-SM-4DXTW	GTEx Tissue Sample Gene Expression Profiles	1.0	2.1215
NOMO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33797
Plasma membrane bounded cell projection	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
ENO2	Pathway Commons Protein-Protein Interactions	1.0	null
KRT1	Pathway Commons Protein-Protein Interactions	1.0	null
SMARCC2	Pathway Commons Protein-Protein Interactions	1.0	null
THOC6	Pathway Commons Protein-Protein Interactions	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-2F-A9KO-01A-11R-A38B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.840061
TUHR14TKB	CCLE Cell Line Gene CNV Profiles	1.0	1.39626
middle midgut	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.59671
MNX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5848
LN229	CCLE Cell Line Gene CNV Profiles	-1.0	-1.9985
Minor Salivary Gland	GTEx Tissue Gene Expression Profiles 2023	1.0	1.05146
GTEX-QDVJ-0726-SM-48U1W	GTEx Tissue Sample Gene Expression Profiles	1.0	1.07403
primary motor cortex (area M1, area 4)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.7619
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
superficial stratum of PCPD	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.59868
KMRC20	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
Ventral nerve cord	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.14
SOX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.3082
NFE2L2-22581777-LYMPHOBLASTOID-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.293866
Deafness	DisGeNET Gene-Phenotype Associations	1.0	null
PMC10794847-mmc5.xlsx-PIAS1_KD_up-Table_S4_Differentially_expressed_genes_with_PIAS1_knockdown_in_the_progenitors_state_Related_to_Figure_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Fetal Brain Male	Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles	1.0	0.98084
GTEX-OOBJ-2026-SM-3NB1R	GTEx Tissue Sample Gene Expression Profiles	1.0	1.49839
GTEX-QMR6-0011-R5A-SM-32PKT	GTEx Tissue Sample Gene Expression Profiles	1.0	0.834521
639V	CCLE Cell Line Gene Expression Profiles	-1.0	-1.47285
EBNA1BP2	Pathway Commons Protein-Protein Interactions	1.0	null
GSE111247_11_v_1_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC10015223-can-22-1444_supplementary_data_2_suppsd2.xlsx-RT4-FOXA1_peaks_Context1_2-Nearest_Ensembl_FOXA1	Rummagene Transcription Factor Associations 2026	1.0	null
abnormal membranous labyrinth morphology	MPO Gene-Phenotype Associations	1.0	null
Autosomal dominant centronuclear myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.32
EZH2_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.962632
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
whole body	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
primary visual cortex (striate cortex, area V1/17)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.94447
abnormal outer hair cell stereociliary bundle morphology	MGI Mouse Phenotype Associations 2023	1.0	null
SUPM2	CCLE Cell Line Gene Expression Profiles	1.0	1.73567
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.0872
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
KRT14	Pathway Commons Protein-Protein Interactions	1.0	null
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
TRIM45	Pathway Commons Protein-Protein Interactions	1.0	null
Hearing impairment	ClinVar Gene-Phenotype Associations 2025	1.0	null
megakaryocyte	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
PMC11148097-41698_2024_569_MOESM2_ESM.pdf-223-IRF3_IRF3	Rummagene Transcription Factor Associations 2026	1.0	null
GTEX-Q2AG-0011-R9A-SM-2HMJ6	GTEx Tissue Sample Gene Expression Profiles	1.0	1.0998
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7425-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.752
Lung squamous cell carcinoma_LUSC_TCGA-85-8070-01A-11R-2247-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-CS-4942-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-7059-11A-01R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
gastric cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.177633
GABARAP	Pathway Commons Protein-Protein Interactions	1.0	null
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9594
hearing impairment	HPO Gene-Disease Associations	1.0	null
head tossing	MPO Gene-Phenotype Associations	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-CU-A3QU-01A-11R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
because	GeneRIF Biological Term Annotations	1.0	null
male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
GTEX-O5YT-2126-SM-3MJGD	GTEx Tissue Sample Gene Expression Profiles	1.0	0.990518
GSE113329,GSE113335_2_v_4_taf6l_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
496100645_HIP_no dementia_no TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.01106
Pheochromocytoma and Paraganglioma_PCPG_TCGA-TT-A6YP-01A-21R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.76768
bewo	HPA Cell Line Gene Expression Profiles	1.0	0.942333
SF767	DepMap CRISPR Gene Dependency	1.0	2.11318
ME-180	COSMIC Cell Line Gene CNV Profiles	1.0	3.12177
hsa-miR-3646	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
DGAT2L7P	Pathway Commons Protein-Protein Interactions	1.0	null
X-linked nonsyndromic deafness	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.13
TUBB4B	Pathway Commons Protein-Protein Interactions	1.0	null
impaired hearing	MGI Mouse Phenotype Associations 2023	1.0	null
GTEX-RUSQ-2126-SM-47JXK	GTEx Tissue Sample Gene Expression Profiles	1.0	1.39726
abnormality of carbohydrate metabolism/homeostasis	GWASdb SNP-Phenotype Associations	1.0	0.203987
Anterior cingulate area, dorsal part, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.56302
TECR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.69453
GABARAPL2	Hub Proteins Protein-Protein Interactions	1.0	null
AAMP	Pathway Commons Protein-Protein Interactions	1.0	null
PMC10353540-Table_1.xlsx-HCC1954_AR_vs_HCC1954_A-ID_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PLEC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17981
medial part of the isB	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.85538
laterodorsal part of putamen	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	1.19269
splice	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-A4CE-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VENTX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.107
FOXP1-21924763-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
mediodorsal nucleus of thalamus_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.949354
turkish	GeneRIF Biological Term Annotations	1.0	null
bone marrow	HPA Tissue Protein Expression Profiles	1.0	1.07254
GTEX-XLM4-0011-R9A-SM-4AT45	GTEx Tissue Sample Gene Expression Profiles	1.0	1.04703
mantle zone of the Fc	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.06617
CD34+	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.898605
GSE135350_3_v_7_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE229309,GSE229314_4_v_1_elavl1_human	RummaGEO Gene Perturbation Signatures	1.0	null
worldwide	GeneRIF Biological Term Annotations	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5879-11A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-21-1071-01A-01R-0692-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GTEX-XMD1-0011-R9A-SM-4AT49	GTEx Tissue Sample Gene Expression Profiles	1.0	1.32173
blast cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.042717
Autosomal recessive nonsyndromic deafness 23	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.275
BICR31	CCLE Cell Line Gene Expression Profiles	1.0	1.46188
GTEX-S95S-0426-SM-4B64I	GTEx Tissue Sample Gene Expression Profiles	1.0	1.63183
GM2A	Pathway Commons Protein-Protein Interactions	1.0	null
acute lymphatic leukemia	GWASdb SNP-Phenotype Associations	1.0	0.517529
Tectum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.56
hsa-miR-4760-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
voltage-gated channel activity	GO Molecular Function Annotations 2015	1.0	null
Neuro D	MotifMap Predicted Transcription Factor Targets	1.0	null
SNU-620	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.90503
HADHA	Pathway Commons Protein-Protein Interactions	1.0	null
lymphoepithelioma-like carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.712796
HCC38	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.37698
mechanosensitive monoatomic ion channel activity	GO Molecular Function Annotations 2023	1.0	null
turkey	GeneRIF Biological Term Annotations	1.0	null
GP5D	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GTEX-WHSE-0011-R5A-SM-3P5ZO	GTEx Tissue Sample Gene Expression Profiles	1.0	0.87596
modiolus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.521617
Anterior cingulate area, dorsal part	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.50795
GSE125219,GSE125221_5_v_8_arid1a_human	RummaGEO Gene Perturbation Signatures	1.0	null
Inner ear	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.299
hippocampus (hippocampal formation)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.02698
Pollen wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.247
UACC893	DepMap CRISPR Gene Dependency	1.0	3.96808
SEC24C	Pathway Commons Protein-Protein Interactions	1.0	null
Usher syndrome type 2A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
superficial gray layer of SC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.02855
anterior (rostral) cingulate (medial prefrontal) cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.927793
RPMI-2650 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.929
GTEX-TKQ2-1526-SM-4DXUN	GTEx Tissue Sample Gene Expression Profiles	1.0	1.16204
superficial stratum of r8BM	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	2.64828
TUBA4A	Pathway Commons Protein-Protein Interactions	1.0	null
r1 part of basomedial reticular formation	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.54702
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1153
dexamethasone_homo sapiens_gpl6244_gse20963	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
Plasma membrane bounded cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.414
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.2008
Presynaptic active zone cytoplasmic component	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.557
MDH2	Pathway Commons Protein-Protein Interactions	1.0	null
XRCC6	Pathway Commons Protein-Protein Interactions	1.0	null
neoplasm of head and neck	GWASdb SNP-Phenotype Associations	1.0	0.335957
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.68406
Sarcoma_SARC_TCGA-X6-A7WB-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
blood plasma	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.766457
male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
KHM1B	CCLE Cell Line Gene Expression Profiles	1.0	1.6565
GTEX-UPJH-0126-SM-4IHLL	GTEx Tissue Sample Gene Expression Profiles	1.0	1.30247
PRPF19	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal dominant nonsyndromic deafness 50	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.352
ANK2	Pathway Commons Protein-Protein Interactions	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-58-8388-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
GSE119978,GSE180930_6_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXA1-33576154-HUMAN-LIVER-PROSTATECANCER	ChEA Transcription Factor Targets 2022	1.0	null
GTEX-S7SF-0926-SM-4AD4M	GTEx Tissue Sample Gene Expression Profiles	1.0	1.17683
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
Retrosplenial area, ventral part, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.61516
pole plasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.336241
respectively	GeneRIF Biological Term Annotations	1.0	null
WM-266-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1902
GSE235516_0_v_1_zdhhc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCIH1793	CCLE Cell Line Gene CNV Profiles	1.0	1.734
Tyrosinemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.537
HSPD1	Pathway Commons Protein-Protein Interactions	1.0	null
Myosin VI complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.598
MBOAT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21412
ChIP_SETDB1_19884257	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Communication disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.302
TP53-23651856-MEF-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
CANX	Pathway Commons Protein-Protein Interactions	1.0	null
abnormal organ of Corti supporting cell morphology	MGI Mouse Phenotype Associations 2023	1.0	null
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.6982
drug-induced hearing loss	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.863
GTEX-TKQ1-0926-SM-4DXU2	GTEx Tissue Sample Gene Expression Profiles	1.0	1.21674
medial part of r1B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.48559
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.03318
voltage-gated calcium channel activity	GO Molecular Function Annotations 2015	1.0	null
all	HPO Gene-Disease Associations	1.0	null
RPL5	Pathway Commons Protein-Protein Interactions	1.0	null
GSE155695,GSE155696_1_v_0_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
Branchiootorenal syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.808
abnormality of the inner ear	HPO Gene-Disease Associations	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.979113
HEI-OC1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.098
JUN::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9485
GSE196505,GSE196507_1_v_2_kdm2b_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SRC_activemutant_51_GSE15815	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	1.0	1.82267
496100374_HIP_possible Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.86934
VZ in midcingulate neocortex	Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles	1.0	0.866864
Brain Lower Grade Glioma_LGG_TCGA-CS-6290-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
musculoskeletal system disease	GWASdb SNP-Disease Associations	1.0	0.137952
PECAPJ41CLONED2	DepMap CRISPR Gene Dependency	1.0	6.24888
contribute	GeneRIF Biological Term Annotations	1.0	null
RBBP4	Pathway Commons Protein-Protein Interactions	1.0	null
intermediate part of r7B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.86156
layer 2 of RSC	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.21325
abnormality of cellular immune system	GWASdb SNP-Phenotype Associations	1.0	0.092178
HCC38	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25826
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9944
GTEX-NPJ8-0011-R2a-SM-2TC6M	GTEx Tissue Sample Gene Expression Profiles	1.0	0.870899
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.77797
KARPAS620	CCLE Cell Line Gene Expression Profiles	1.0	1.52714
RDES	DepMap CRISPR Gene Dependency	1.0	2.03993
Entorhinal area, medial part, dorsal zone, layer 1	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00258
SK-BR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.915815
Middle ear cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.626
outer hair cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.44775
GTEX-OXRP-0926-SM-48TC1	GTEx Tissue Sample Gene Expression Profiles	1.0	1.23392
Labellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.908
parasubiculum	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.0832
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.7475
GTEX-OXRK-1326-SM-3NB1A	GTEx Tissue Sample Gene Expression Profiles	1.0	0.920756
central nervous system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
RPL10	Pathway Commons Protein-Protein Interactions	1.0	null
WM3772F	DepMap CRISPR Gene Dependency	1.0	3.51091
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
actin-based cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.9
OE19	CCLE Cell Line Gene CNV Profiles	1.0	1.37535
Brain Lower Grade Glioma_LGG_TCGA-HW-8319-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
substrate-specific transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
sense organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.38551
GTEX-SUCS-1326-SM-4DM5T	GTEx Tissue Sample Gene Expression Profiles	1.0	1.08182
GSE128634,GSE128636_4_v_0_foxo1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Thalassemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.143
hippocampus (hippocampal formation)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.14331
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
caudate nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.15338
Primary somatosensory area, unassigned, layer 2/3	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08426
laterodorsal nucleus	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.7327
IGF2BP3	Pathway Commons Protein-Protein Interactions	1.0	null
primary auditory cortex (core)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.11336
mantle zone of r7BI	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.86156
TRIM28	Pathway Commons Protein-Protein Interactions	1.0	null
PRKCI	Pathway Commons Protein-Protein Interactions	1.0	null
layer 3 of FCx	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34875
SRPRB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54638
ETS2	MotifMap Predicted Transcription Factor Targets	1.0	null
GSE95685_4_v_3_tcpobop_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
ventrolateral prefrontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.19173
NOVA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03304
bone remodeling disease	GWASdb SNP-Disease Associations	1.0	0.391692
sensory perception of sound	GO Biological Process Annotations 2023	1.0	null
Autosomal recessive nonsyndromic deafness 12	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.398
PMC11211180-405_2024_8492_MOESM1_ESM.pdf-2-POU4F3_POU4F3	Rummagene Transcription Factor Associations 2026	1.0	null
G3BP1	Pathway Commons Protein-Protein Interactions	1.0	null
GTEX-S3XE-1526-SM-4AD5A	GTEx Tissue Sample Gene Expression Profiles	1.0	1.53582
Waardenburg syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.094
vestibular saccular macula degeneration	MGI Mouse Phenotype Associations 2023	1.0	null
496100450_HIP_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.01379
TUBGCP4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10734
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.061223
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.910204
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-A49H-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.894664
Stereocilium bundle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	4.0
studied	GeneRIF Biological Term Annotations	1.0	null
inorganic cation transmembrane transport	GO Biological Process Annotations 2015	1.0	null
VMRCRCZ	CCLE Cell Line Gene Expression Profiles	-1.0	-2.2868
OCI-LY-10	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21024
BT-474	COSMIC Cell Line Gene Mutation Profiles	1.0	null
salivarygland	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.85361
abnormal hair cell morphology	MPO Gene-Phenotype Associations	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A42K-06A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
transport	GO Biological Process Annotations 2015	1.0	null
DSP	Pathway Commons Protein-Protein Interactions	1.0	null
COV434	CCLE Cell Line Gene Expression Profiles	1.0	2.37589
CAND1	Pathway Commons Protein-Protein Interactions	1.0	null
UBTF_02_56	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	3.5025
CTNNB_Activation (deltaNB-cateninER transgenics)_GDS1560_767_mouse_Skin - 1 Day	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
DDX24	Pathway Commons Protein-Protein Interactions	1.0	null
SSBP1	Pathway Commons Protein-Protein Interactions	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7476-01A-11R-2027-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LIN7A	Pathway Commons Protein-Protein Interactions	1.0	null
Autosomal recessive nonsyndromic deafness 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.765
Refractive error	GWAS Catalog SNP-Phenotype Associations 2025	1.0	3.52218
lateral part of r7B	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.00787
ion transmembrane transport	GO Biological Process Annotations 2015	1.0	null
HT144	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46333
Acoustic neuroma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.281
r2 part of lateral pontine nuclei	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.38957
Seta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.174
Autoimmune disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	0.888
GTEX-TSE9-0526-SM-3DB7Z	GTEx Tissue Sample Gene Expression Profiles	1.0	1.2114
SNRPF	Pathway Commons Protein-Protein Interactions	1.0	null
L363	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63198
GTEX-PWN1-2526-SM-48TDS	GTEx Tissue Sample Gene Expression Profiles	1.0	0.943973
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A706-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mantle zone of PaS	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.08373
P31FUJ	DepMap CRISPR Gene Dependency	1.0	4.00067
HGC27	CCLE Cell Line Gene CNV Profiles	1.0	1.41874
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SMARCC1	Pathway Commons Protein-Protein Interactions	1.0	null
Gas bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.701
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.49
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7897-01A-21R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sarcoma_SARC_TCGA-DX-A1L0-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NDUFAF5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.70365
TROVE2	Pathway Commons Protein-Protein Interactions	1.0	null
CHSA0011	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PPP2R1A	Pathway Commons Protein-Protein Interactions	1.0	null
MAN1B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11783
hearing/vestibular/ear phenotype	MPO Gene-Phenotype Associations	1.0	null
HOS	CCLE Cell Line Gene CNV Profiles	1.0	1.72055
Brain Lower Grade Glioma_LGG_TCGA-DB-5273-01A-01R-1470-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
abnormal locomotor coordination	MPO Gene-Phenotype Associations	1.0	null
RPS24	Pathway Commons Protein-Protein Interactions	1.0	null
RPS2	Pathway Commons Protein-Protein Interactions	1.0	null
spanning component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.18389
SFPQ	Pathway Commons Protein-Protein Interactions	1.0	null
hippocampus (hippocampal formation)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.934689
WM983B	CCLE Cell Line Gene Expression Profiles	1.0	1.77718
phenotypic abnormality	HPO Gene-Disease Associations	1.0	null
CNOT10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16793
GTEX-QVUS-0011-R10A-SM-3GIK3	GTEx Tissue Sample Gene Expression Profiles	1.0	0.911591
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.55283
GTEX-S3XE-0926-SM-4AD4S	GTEx Tissue Sample Gene Expression Profiles	1.0	1.56762
SMAD4	ChEA Transcription Factor Targets	1.0	null
hsa-miR-1287	TargetScan Predicted Conserved microRNA Targets	1.0	1.45615
membrane part	GO Cellular Component Annotations 2015	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9762
GTEX-U8T8-1126-SM-4DXUE	GTEx Tissue Sample Gene Expression Profiles	1.0	1.40453
SEC23A	Pathway Commons Protein-Protein Interactions	1.0	null
Developmental disorder of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.443
skeletal system	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.029927
PURA	Pathway Commons Protein-Protein Interactions	1.0	null
r8 basal plate	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	1.0	1.36328
OLIG2-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
mantle zone of Hb	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-2.01152
inorganic cation transmembrane transporter activity	GO Molecular Function Annotations 2015	1.0	null
DHX9	Pathway Commons Protein-Protein Interactions	1.0	null
Sensory processing of sound by inner hair cells of the cochlea	Reactome Pathways 2024	1.0	null
SNRPD1	Pathway Commons Protein-Protein Interactions	1.0	null
FAU	Pathway Commons Protein-Protein Interactions	1.0	null
SW1116	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63211
SUDHL8	CCLE Cell Line Gene Expression Profiles	1.0	2.0616
GSE237426_0_v_1_eif4a1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GTEX-X88G-0326-SM-47JZ4	GTEx Tissue Sample Gene Expression Profiles	1.0	0.935909
GTEX-WEY5-0926-SM-4LMI4	GTEx Tissue Sample Gene Expression Profiles	1.0	1.78148
FARAGE	COSMIC Cell Line Gene Mutation Profiles	1.0	null
BARX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.6577
HSPH1	Pathway Commons Protein-Protein Interactions	1.0	null
transmembrane transport	GO Biological Process Annotations 2015	1.0	null
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.5644
GTEX-TMMY-0426-SM-33HBB	GTEx Tissue Sample Gene Expression Profiles	1.0	0.951595
GTEX-N7MT-0326-SM-48TDP	GTEx Tissue Sample Gene Expression Profiles	1.0	0.929197
Bladder Urothelial Carcinoma_BLCA_TCGA-DK-A6B6-01A-11R-A30C-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9699
GTEX-QLQ7-0926-SM-447BC	GTEx Tissue Sample Gene Expression Profiles	1.0	2.36225
hematopoietic stem cell	TISSUES Experimental Tissue Protein Expression Evidence Scores	1.0	0.042717
SNU620	CCLE Cell Line Gene CNV Profiles	1.0	1.50687
GR-M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5727
PRPH	Pathway Commons Protein-Protein Interactions	1.0	null
Labyrinthitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.001
DUT	Pathway Commons Protein-Protein Interactions	1.0	null
CASKI	DepMap CRISPR Gene Dependency	1.0	2.07245
RPL31	Pathway Commons Protein-Protein Interactions	1.0	null
VSIG8	Pathway Commons Protein-Protein Interactions	1.0	null
mutaions	GeneRIF Biological Term Annotations	1.0	null
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3701
confirms	GeneRIF Biological Term Annotations	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Mesend_D2_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
GSE157383_3_v_2_abemaciclib_human	RummaGEO Drug Perturbation Signatures	1.0	null
HOXD12::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8831
GTEX-P4PP-1626-SM-2HMJF	GTEx Tissue Sample Gene Expression Profiles	1.0	0.851794
Perturb_5889_OE_myrAKT1_SRP193116	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GSE234340_1_v_2_muc2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Duchenne muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.324
system process	GO Biological Process Annotations 2015	1.0	null
NCIH2110	DepMap CRISPR Gene Dependency	1.0	3.93267
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4018
SOX2	ChEA Transcription Factor Targets	1.0	null
GSE183994_1_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC9643473-Table1.xls-MAF_0_005-Gene_refGenecanonical_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
PPARG-20176806-MACROPHAGES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Perturb_17541_KD_MEOX1_SRP213607	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
GTEX-R55E-0011-R6A-SM-2TC5T	GTEx Tissue Sample Gene Expression Profiles	1.0	0.962395
autosomal dominant inheritance	HPO Gene-Disease Associations	1.0	null
NFIB	ChEA Transcription Factor Targets	1.0	null
LC1F	CCLE Cell Line Gene Expression Profiles	1.0	1.3995
AR-19668381-PC3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE178714_1_v_4_smad2_human	RummaGEO Gene Perturbation Signatures	1.0	null
periventricular stratum of cerebellar vermis	Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles	-1.0	-1.34875
channel activity	GO Molecular Function Annotations 2015	1.0	null
SW684	COSMIC Cell Line Gene Mutation Profiles	1.0	null
abnormality of the abdomen	GWASdb SNP-Phenotype Associations	1.0	0.077162
PWP1	Pathway Commons Protein-Protein Interactions	1.0	null
GSE112760,GSE112767_4_v_5_ddx6_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TRAPPC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.99229
PCI-15A	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Exine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.284
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.068
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.942126
Actin filament bundle of actin-based cell projection	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.576
Hearing loss	ClinVar Gene-Phenotype Associations 2025	1.0	null
spectrum	GeneRIF Biological Term Annotations	1.0	null