association dataset threshold value standardized value H3K4me1_erythroblast_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null MYOG_myocyte_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null TK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02678 CLPP_KO_GSE40207_378_mouse_Testies GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null PMC7064149-CAM4-9-2062-s004.xlsx-Table_S5-Table_S5_DEGs_between_low-_and_high-FOXP4-AS1_expression_groups_in_PDAC_tumor_tissues_FOXP4 Rummagene Transcription Factor Associations 2026 1.0 null ETV5::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.4664 COLO679 DepMap CRISPR Gene Dependency 1.0 2.98213 LS1034 DepMap CRISPR Gene Dependency 1.0 9.14923 RKO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08873 ME-180 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.80195 MAX JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.6591 GATA1 ENCODE Transcription Factor Targets 1.0 null CCRF-CEM COSMIC Cell Line Gene Mutation Profiles 1.0 null NCI-H2373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.11395 Nr5a2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 31.6909 496100549_FWM_no dementia_TBI_87_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.24361 H3K4me1_G1E_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null GSE219195_4_v_5_rbm12_human RummaGEO Gene Perturbation Signatures 1.0 null SREBP2-21459322-LIVER-MOUSE ChEA Transcription Factor Binding Site Profiles 1.0 null TCF4 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.7819 Perturb_6190_KO_Mecp2_SRP188207 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 1.34208 RMGI DepMap CRISPR Gene Dependency 1.0 2.17969 Perturb_5101_KD_Dcaf11_SRP201454 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 3.71144 GSE48812_8_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null THP-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.40104 MONOMAC1 DepMap CRISPR Gene Dependency 1.0 3.79721 Perturb_2235_KO_Irf8_SRP270893 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 2.44439 salivarygland BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.849918 cellular_component GO Cellular Component Annotations 2015 1.0 null GSE88819_6_v_10_tug1_mouse RummaGEO Gene Perturbation Signatures 1.0 null ERF::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 33.0923 ZNF157 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 53.8825 PE01 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.73689 CTCFL JASPAR Predicted Human Transcription Factor Targets 2025 1.0 48.2357 COLO 201 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13047 496100523_HIP_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 6.21997 H3K27ac_liver_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null H3K36me3_brain_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null POLR2A_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE174498,GSE174500_0_v_8_asparaginase_human RummaGEO Drug Perturbation Signatures -1.0 null TMEM210 family InterPro Predicted Protein Domain Annotations 1.0 null GSE175787_11_v_0_rhoc_human RummaGEO Gene Perturbation Signatures 1.0 null 496100285_TCx_probable Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.13194 NCI-H441 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.84153 496100357_TCx_no dementia_no TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.95703 GSE175787_11_v_2_rhoc_human RummaGEO Gene Perturbation Signatures 1.0 null Perturb_17268_KO_Sox30_SRP139811 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations -1.0 -20.0 H3K4me1_brain_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01192 Disease of anatomical entity DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 H3K36me3_spleen_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PE/CA-PJ15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.40233 H19_DEPLETION_GDS4787_92_mouse_C2C12 myoblast cell line GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null NR1H2::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.84 Nr1h3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 26.2123 GSE250534_2_v_3_cabergoline_mouse RummaGEO Drug Perturbation Signatures 1.0 null JJN-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.966685 SFTPC_KO_GSE35989_48_mouse_lung (type II cells) GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null 496100345_FWM_no dementia_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.83172 496100561_PCx_probable Alzheimer's disease_TBI_78_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.03047 H3K4me1_olfactory bulb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null NCI-H820 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.21841 Respiratory system disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 EFO-27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61581 testis BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 2.09859 TAL1_MEL cell line_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null TWIST1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.5527 Tfcp2l1 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 51.8126 NR2F6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.8499 GSE168797_2_v_5_cannabidiol_human RummaGEO Drug Perturbation Signatures -1.0 null GSE93674_1_v_0_ezh2_mouse RummaGEO Gene Perturbation Signatures -1.0 null TCF12 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.1396 OVSAHO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.904034 Obstructive lung disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 ECHDC1 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.28919 496100598_PCx_possible Alzheimer's disease_no TBI_100+_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.34932 MKN-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02678 PMC4804643-13014_2016_623_MOESM2_ESM.xlsx-MI_GENES-ID_MITF Rummagene Transcription Factor Associations 2026 1.0 null POLR2A_bone marrow macrophage_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE175787_8_v_10_rhoc_human RummaGEO Gene Perturbation Signatures -1.0 null H3K27ac_limb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null KYSE-450 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.868763 LS411N DepMap CRISPR Gene Dependency 1.0 2.19859 GSE138001_5_v_4_rorb_mouse RummaGEO Gene Perturbation Signatures 1.0 null MYOG_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE264621_1_v_3_secretin_human RummaGEO Drug Perturbation Signatures 1.0 null Chronic obstructive pulmonary disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 NCI-H2009 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.93875 496100505_TCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 5.45994 NOMO1 DepMap CRISPR Gene Dependency 1.0 2.49091 HCC1419 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.35707 NR2C1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 15.2715 MHH-ES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17123 trachea BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.3028 CTCF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 269.287 H3K4me1_heart_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null NR1H4::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.4276 CLPP_KO_GDS4791_104_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null 496100495_FWM_no dementia_TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.37165 SF295 DepMap CRISPR Gene Dependency 1.0 2.23813 salivary gland GTEx Tissue Gene Expression Profiles 1.0 1.4733 POLR2A_small intestine_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null NB10 COSMIC Cell Line Gene Mutation Profiles 1.0 null GSE224969,GSE224971_3_v_5_chtop_mouse RummaGEO Gene Perturbation Signatures 1.0 null SK-MEL-24 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -2.21927 496100527_FWM_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.80011 SFRP5_KO_GDS4988_27_mouse_gonadal white adipose tissue HFD GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null MAPK14_knockout_14_GDS2693 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations -1.0 -1.27729 NCI-H522 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.32136 HCC2302 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 496100351_FWM_no dementia_TBI_95-99_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.02363 EJM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.21539 HELA Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.35707 TFAP2C JASPAR Predicted Human Transcription Factor Targets 2025 1.0 156.004 POLR2AphosphoS5_G1E_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null XBP1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.7012 SVBP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.72303 ASCL1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 68.2836 CTCF ENCODE Transcription Factor Targets 1.0 null UACC-812 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 GSE111660_2_v_6_prdm16_mouse RummaGEO Gene Perturbation Signatures 1.0 null RARA::RXRG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.7448 PMC6400843-Table_5.xls-C_FOXM1_Correlated_genes-Ensembl_ID_FOXM1 Rummagene Transcription Factor Associations 2026 1.0 null PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Pneo-r__CIC-1n_h-r__CIC-2n_h-r_CIC Rummagene Transcription Factor Associations 2026 1.0 null 496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.78463 Esrrg JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 25.2556 H3K27ac_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null CORL23 DepMap CRISPR Gene Dependency 1.0 2.17154 GSE48812_2_v_1_sulforaphane_human RummaGEO Drug Perturbation Signatures -1.0 null UCSD-242L Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.35791 H3K27ac_MEL cell line_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null TTC642 DepMap CRISPR Gene Dependency 1.0 2.12118 HCC2270 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67516 Perturb_3442_KO_Mll4_SRP101279 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations -1.0 -1.97406 integral component of membrane GO Cellular Component Annotations 2015 1.0 null Perturb_11426_KD_PRMT1_SRP357238 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -2.98291 JAK2_activemutant_72_GSE21842 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.62866 KRAP_Deficiency_GDS3528_564_mouse_Liver GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null GSE175787_8_v_7_rhoc_human RummaGEO Gene Perturbation Signatures -1.0 null H3K4me1_erythroblast_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null MAC2A DepMap CRISPR Gene Dependency 1.0 3.57065 EBF1-22473956-LYMPHODE-MOUSE ChEA Transcription Factor Targets 2022 1.0 null TP53 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.6827 NFIB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.2133 ZNF675 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.3103 POLR2A ENCODE Transcription Factor Targets 1.0 null HCC630 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.05166 SNU81 DepMap CRISPR Gene Dependency 1.0 2.81616 GSE175787_4_v_2_rhoc_human RummaGEO Gene Perturbation Signatures 1.0 null Perturb_4136_KD_Grin1_SRP106749 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations -1.0 -3.77343 SNAI2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.2664 H3K9ac_MEL cell line_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null RC-K8 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.50114 GSE68156_3_v_5_dextran_mouse RummaGEO Drug Perturbation Signatures -1.0 null 496100489_HIP_possible Alzheimer's disease_no TBI_100+_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.8372 HIC2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 18.2976 POLR2A_heart_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null bladder GTEx Tissue Gene Expression Profiles -1.0 -2.09232 Nr1h3::Rxra JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 23.844 PMC4804643-13014_2016_623_MOESM2_ESM.xlsx-Gene_List-MI_genes_MITF Rummagene Transcription Factor Associations 2026 1.0 null TIMM21 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.44181 NR4A2::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.3715 496100616_FWM_no dementia_TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.59281 GSE191105_2_v_4_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null MYOG ENCODE Transcription Factor Targets 1.0 null 496100641_PCx_no dementia_no TBI_84_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.11117 thyroid BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.23083 c2c12 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.75758 GCM2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 16.9672 EPLC-272H Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.881788 ESR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 54.8875 HNF4A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.8941 NCI-H322T Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01192 COLO 794 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.02752 GSE264621_1_v_6_secretin_human RummaGEO Drug Perturbation Signatures 1.0 null GSE174498,GSE174500_0_v_1_asparaginase_human RummaGEO Drug Perturbation Signatures -1.0 null HN Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.12918 OVCAR-4 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61581 ZNF214 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.1204 GSE88819_1_v_8_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null GSE162575,GSE162609_3_v_2_tfe3_human RummaGEO Gene Perturbation Signatures -1.0 null Perturb_14688_KO_Pax6_ERP022747 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 1.68756 Zic1::Zic2 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 34.1849 PMC9541747-AGE-53-680-s003.xlsx-TableS6-Table_S6_Genes_with_missense_mutations_in_Yaroslavl_cattle_MAF_0_1_and_FST_0_4_in_the_1000_Bull_Genomes_Run_9_MAF Rummagene Transcription Factor Associations 2026 1.0 null CALU-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.965689 MAX ENCODE Transcription Factor Targets 1.0 null Cauda epididymis TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.448 GSE175787_8_v_9_rhoc_human RummaGEO Gene Perturbation Signatures -1.0 null H3K4me1_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null Migraine without aura DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.216 ERF::NHLH1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 81.9561 HUPT4 DepMap CRISPR Gene Dependency 1.0 3.44497 NFKB2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.04 GSE239844_4_v_5_crizotinib_human RummaGEO Drug Perturbation Signatures 1.0 null RXRB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 58.5334 SK-MES-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.966685 HAND2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.6193 NCI-H196 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.870962 PLAGL2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 78.5249 MYOD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 37.5958 TBX21 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 20.7488 RERF-LC-OK Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.13002 A172 DepMap CRISPR Gene Dependency 1.0 2.84387 SOX2-27498859-CHIP-SEQ-STOMACH-MOUSE ChEA Transcription Factor Targets 2022 1.0 null Ezh2_Deficiency_GDS4309_364_mouse_Hearts GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null KPL-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 2.23962 EPLC272H DepMap CRISPR Gene Dependency 1.0 2.05888 496100317_FWM_no dementia_no TBI_81_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.92396 9505BIK DepMap CRISPR Gene Dependency 1.0 2.21429 PMC6400843-Table_5.xls-C_FOXM1_Correlated_genes-Symbol_FOXM1 Rummagene Transcription Factor Associations 2026 1.0 null TAL1_G1E-ER4_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null DMS 273 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 FADU Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.13047 H3K4me1_megakaryocyte_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null POLR2AphosphoS2_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SREBF2 ChEA Transcription Factor Targets 1.0 null ZNF692 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 60.9005 LXF-289 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.951854 H3K4me1_limb_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null H3K4me1_testis_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null A-427 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.35791 Lower respiratory tract disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 ATF6 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 24.1747 H3K27me3_testis_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null EFM-19 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.67516 GSE48812_11_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null NMB DepMap CRISPR Gene Dependency 1.0 4.13881 GSE191105_2_v_3_nat1_mouse RummaGEO Gene Perturbation Signatures -1.0 null SCC-15 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.12918 HCC515 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 3.19301 POLR2AphosphoS2_CH12.LX_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null CTCF_thymus_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null PDCD11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.36035 PATU8902 DepMap CRISPR Gene Dependency 1.0 3.51762 NFYB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.7789 H3K4me3_G1E-ER4_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null SK-MEL-31 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.73689 GSE109285_3_v_2_glucagon_mouse RummaGEO Drug Perturbation Signatures 1.0 null PMC10070455-41598_2023_32568_MOESM3_ESM.xlsx-Genes_AA-genes_TEAD1 Rummagene Transcription Factor Associations 2026 1.0 null MDA-MB-415 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.289 ZNF816 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 51.1709 TP73 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.1574 ZNF382 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 46.9887 Prdm14 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.0723 fibro-adipogenic progenitor cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 1.026 RARA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 50.4297 ZEB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.4204 nih 3T3 BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.15305 skeletalmuscle BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.46784 GSE168797_2_v_3_cannabidiol_human RummaGEO Drug Perturbation Signatures -1.0 null NCI-H2170 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.904034 COLO 857 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.01192 ES5 DepMap CRISPR Gene Dependency 1.0 3.28993 NFKB1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 42.9582 ZNF684 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 61.7891 HOP-92 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.879942 COLO 699 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.951854 CAKI-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.42648 TFAP2A JASPAR Predicted Human Transcription Factor Targets 2025 1.0 139.605 TAL1_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE131161_3_v_4_rarres1_mouse RummaGEO Gene Perturbation Signatures -1.0 null NCI-H446 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.50823 GSE168797_2_v_0_cannabidiol_human RummaGEO Drug Perturbation Signatures -1.0 null NR2F1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 83.1389 THRB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 85.5634 OVCA 432 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.966685 NCI-H1581 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.37808 TCF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.2025 CLPP_KO_GSE40207_392_mouse_Testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null ZNF354C JASPAR Predicted Human Transcription Factor Targets 2025 1.0 14.8125 ZNF320 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 157.496 G111 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.02557 RBIS CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.58344 OCI-LY-3 Klijn et al., Nat. 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Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19577 GSE126127_5_v_4_prmt1_mouse RummaGEO Gene Perturbation Signatures -1.0 null SFTPC_KO_GDS4876_476_mouse_Lung Type II cells GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GSE189653,GSE203344_2_v_0_fluoxetine_mouse RummaGEO Drug Perturbation Signatures -1.0 null H3K4me1_ES-E14_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null Perturb_7201_KD_DHX9_SRP080966 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 -1.43038 GSE48812_4_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null 496100487_HIP_probable Alzheimer's disease_no TBI_89_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.03152 HCC193 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06415 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_2_CTCF Rummagene Transcription Factor Associations 2026 1.0 null SMSCTR DepMap CRISPR Gene Dependency 1.0 2.10385 STAT3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.0173 GSE48812_0_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null GSE88819_1_v_4_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null MCM3AP CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 3.32819 IGR1 DepMap CRISPR Gene Dependency 1.0 2.93753 SW626 DepMap CRISPR Gene Dependency 1.0 2.93072 GSE175787_4_v_0_rhoc_human RummaGEO Gene Perturbation Signatures 1.0 null EBF3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 78.0659 SNU-398 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 H3K4me1_G1E-ER4_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null KP-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.965689 ZBTB24 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 74.6304 GSE100217_2_v_3_ethanol_mouse RummaGEO Drug Perturbation Signatures 1.0 null H3K4me1_ES-Bruce4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null MEL-HO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.880664 Male infertility DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.131 H3K4me1_MEL cell line_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null b220.bcell BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -0.928551 Esophagus - Gastroesophageal Junction GTEx Tissue Gene Expression Profiles 2023 1.0 7.20955 SU.86.86 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.289 ZNF669 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 25.745 Perturb_15393_KD_CHKA_SRP050331 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 4.79023 HCC515 DepMap CRISPR Gene Dependency 1.0 17.9509 USF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.919 DKMG DepMap CRISPR Gene Dependency 1.0 2.32604 RFX1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.8865 NCIH2887 DepMap CRISPR Gene Dependency 1.0 7.39777 H3K4me1_heart_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null EM2 DepMap CRISPR Gene Dependency 1.0 2.94284 OSR2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.33 MED11 CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47356 NCI-H1373 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.5094 CAL 27 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.990618 MYOD1_myocyte_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null Perturb_8594_KO_Tsc1_SRP300523 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 2.97811 GSE163275_1_v_0_irf8_human RummaGEO Gene Perturbation Signatures 1.0 null REST JASPAR Predicted Human Transcription Factor Targets 2025 1.0 89.0657 RKO-E6 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08873 NEUROD1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.4115 AKT1_knockout_215_GSE39699 GEO Signatures of Differentially Expressed Genes for Kinase Perturbations 1.0 1.67282 MYOD1_myocyte_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE121866_0_v_2_six4_human RummaGEO Gene Perturbation Signatures -1.0 null PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_3_CTCF Rummagene Transcription Factor Associations 2026 1.0 null NCI-H1355 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.08743 GLIS3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 54.3304 Vdr JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 27.3521 NCI-H1838 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.966685 TFEB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 17.0831 SNU-387 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.71853 UBB_KO_GDS3906_496_mouse_Testis - 28 Days GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null HBL-100 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.880664 Disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 OCI-LY-10 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17123 NCI-H716 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 GSE48812_2_v_10_sulforaphane_human RummaGEO Drug Perturbation Signatures -1.0 null Perturb_11378_KD_OGT1_SRP311080 PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 1.67443 H3K4me1_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null INSM1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 49.375 RARB JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.3492 PMC8497275-41388_2021_1985_MOESM9_ESM.xlsx-ER_targets_ER-SRC3-RAC1_sites-Nearest_Ensembl_NCOA3 Rummagene Transcription Factor Associations 2026 1.0 null H3K4me1_liver_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null MDA-MB-468 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.965689 HCC1011 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.19683 GSE214212_2_v_1_chd6_human RummaGEO Gene Perturbation Signatures -1.0 null STAT1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.7393 NCI-H1435 COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K27ac_kidney_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null H3K4me3_G1E-ER4_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null RXRG JASPAR Predicted Human Transcription Factor Targets 2025 1.0 75.6572 CFPAC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.5094 PECAPJ15 DepMap CRISPR Gene Dependency 1.0 2.41729 RXRA::VDR JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.5 NP8 DepMap CRISPR Gene Dependency 1.0 2.85355 CREB3L1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 39.3757 TAL1_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null RMG-I Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.17409 Jun JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.9547 STAT5A-24692510-EPITHELIUM-MOUSE-MAMMARY ChEA Transcription Factor Targets 2022 1.0 null NR2C2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 62.3524 TBP_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null SNU-484 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.998895 H3K4me1_kidney_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null SK-BR-3 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.13708 NCI-H1573 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -3.27347 TFAP2B JASPAR Predicted Human Transcription Factor Targets 2025 1.0 161.858 CLPP_KO_GDS4791_107_mouse_heart GEO Signatures of Differentially Expressed Genes for Gene Perturbations -1.0 null GSE224004,GSE224005_0_v_8_chd4_human RummaGEO Gene Perturbation Signatures 1.0 null GIMEN DepMap CRISPR Gene Dependency 1.0 4.12915 RPMI 8226 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.44892 Atf3 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 17.323 ZBTB12 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 21.9025 MDAMB453 DepMap CRISPR Gene Dependency 1.0 6.89335 H3K4me1_small intestine_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE121866_0_v_3_six4_human RummaGEO Gene Perturbation Signatures -1.0 null COLO 741 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.06415 496100396_HIP_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.03805 D502MG DepMap CRISPR Gene Dependency 1.0 3.59634 FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 26.2194 rnf2_20805357_megakaryocytic_l8057_lof_mouse_gpl1261_gse33659 GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations 1.0 0.6003 ZNF331 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 34.5533 H3K4me3_megakaryocyte_mm9_2 ENCODE Histone Modification Site Profiles 1.0 null pyrazinamide_mus musculus_gpl6246_gse48027 GEO Signatures of Differentially Expressed Genes for Small Molecules -1.0 null GSE65617_2_v_3_aire_mouse RummaGEO Gene Perturbation Signatures -1.0 null maturity-onset diabetes of the young type 2 DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 1.0 1.273 GATA1_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null ZNF528 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 58.9984 PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-Mor_CTCF-Unnamed_1_CTCF Rummagene Transcription Factor Associations 2026 1.0 null H3K4me1_embryonic fibroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GLI3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 38.3477 ZNF213 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 85.1368 membrane part GO Cellular Component Annotations 2015 1.0 null TAL1 ENCODE Transcription Factor Targets 1.0 null SRF_KO_GDS3732_148_mouse_HSC GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null ZKSCAN3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 41.8857 ESR1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 27.7218 PMC6299095-41389_2018_108_MOESM4_ESM.xlsx-T47D-TRPS1_peak-gene_symbol_TRPS1 Rummagene Transcription Factor Associations 2026 1.0 null H3K27me3_ES-Bruce4_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null H3K27ac_small intestine_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null HCC461 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 spleen BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 1.07371 OVTOKO Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.81876 G112 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 Peritubular contractile cell TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 1.0 0.737 bonemarrow BioGPS Mouse Cell Type and Tissue Gene Expression Profiles 1.0 0.940562 POLR2AphosphoS5_G1E_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null C84 DepMap CRISPR Gene Dependency 1.0 2.06104 HCC1359 DepMap CRISPR Gene Dependency 1.0 2.43003 GSE88819_1_v_12_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null COLO 320DM Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.852015 CLPP_KO_GDS4791_537_mouse_testis GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null NCI-H187 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.28787 ZNF707 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 54.1798 KDM2B-26808549-CHIP-SEQ-REH-HUMAN ChEA Transcription Factor Targets 2022 1.0 null PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Down_bins-Down_bins_loosing_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1 Rummagene Transcription Factor Associations 2026 1.0 null H3K4me1_bone marrow_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE133764_2_v_0_chd2_human RummaGEO Gene Perturbation Signatures -1.0 null 496100407_FWM_probable Alzheimer's disease_no TBI_88_M Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 4.49322 intrinsic component of membrane GO Cellular Component Annotations 2015 1.0 null 496100575_PCx_no dementia_no TBI_89_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 3.44637 496100535_FWM_no dementia_no TBI_90-94_F Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles 1.0 2.15036 HEY1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 19.2099 POLR2A_MEL cell line_mm9_3 ENCODE Transcription Factor Binding Site Profiles 1.0 null SREBP2-21459322-LIVER-MOUSE ChEA Transcription Factor Targets 2022 1.0 null ICC2 DepMap CRISPR Gene Dependency 1.0 2.42076 H3K4me1_placenta_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GLIS1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 66.3615 MAF JASPAR Predicted Human Transcription Factor Targets 2025 1.0 29.32 NEUROG2 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 40.591 preoptic BioGPS Mouse Cell Type and Tissue Gene Expression Profiles -1.0 -1.83645 GSE183994_1_v_0_scml2_mouse RummaGEO Gene Perturbation Signatures 1.0 null MAFA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 36.451 THAP1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 40.6727 ML-2 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.61581 A673 DepMap CRISPR Gene Dependency 1.0 2.07457 HCC78 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.942196 T98G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 EBF1 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 71.0813 RARA::RXRA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 35.1304 Axonemal microtubule COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 0.962 COLO-783 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.965689 H3K4me3_G1E_mm9_3 ENCODE Histone Modification Site Profiles 1.0 null ASPC1 DepMap CRISPR Gene Dependency 1.0 2.56733 GSE131649_6_v_0_hemin_human RummaGEO Drug Perturbation Signatures 1.0 null LXFL529 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.40104 GSE48812_7_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null CREB3 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 22.2643 U-87-MG COSMIC Cell Line Gene Mutation Profiles 1.0 null H3K4me1_brown adipose tissue_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null acrosomal vesicle GO Cellular Component Annotations 2025 1.0 null GSE169152_3_v_2_ibrutinib_human RummaGEO Drug Perturbation Signatures 1.0 null NUGC-4 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.873169 H3K36me3_MEL cell line_mm9_2 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE131649_2_v_0_hemin_human RummaGEO Drug Perturbation Signatures 1.0 null prostate GTEx Tissue Gene Expression Profiles 1.0 1.2167 Perturb_6191_Mut_Mecp2_SRP188207 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 2.06132 H3K4me1_lung_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null ZNF76 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 28.107 MYOD1 ENCODE Transcription Factor Targets 1.0 null TBP ENCODE Transcription Factor Targets 1.0 null DB Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.42648 KASUMI1 DepMap CRISPR Gene Dependency 1.0 4.28943 FAM104A CM4AI KOLF21J CRISPRi Gene Perturbation Atlas 1.0 2.47915 Zfp809 JASPAR Predicted Mouse Transcription Factor Targets 2025 1.0 50.9477 NCI-H2803 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -1.81876 MAX_MEL cell line_mm9_1 ENCODE Transcription Factor Binding Site Profiles 1.0 null GSE48812_3_v_5_sulforaphane_human RummaGEO Drug Perturbation Signatures 1.0 null PBX-27287812-CHIP-SEQ-EMBYONIC-LIMB-MOUSE ChEA Transcription Factor Targets 2022 1.0 null DAN-G Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 1.21539 FOXO1_KD_GDS2720_478_mouse_LSK GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null G-361 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles 1.0 0.951854 Lung disease DISEASES Experimental Gene-Disease Association Evidence Scores 2025 1.0 0.546 H3K4me1_erythroblast_mm9_1 ENCODE Histone Modification Site Profiles 1.0 null GSE88819_1_v_2_tug1_mouse RummaGEO Gene Perturbation Signatures -1.0 null Perturb_4456_KD_Mecp2_SRP125116 PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations 1.0 3.64963 ETV2::FIGLA JASPAR Predicted Human Transcription Factor Targets 2025 1.0 31.8069 TIA1_KO_GSE54418_264_mouse_cerebellum GEO Signatures of Differentially Expressed Genes for Gene Perturbations 1.0 null ZNF417 JASPAR Predicted Human Transcription Factor Targets 2025 1.0 23.7037 GCH1 complex COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 1.0 1.313 PANC-1 Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles -1.0 -0.842519 GSE120612_7_v_0_etoposide_human RummaGEO Drug Perturbation Signatures 1.0 null