association	dataset	threshold value	standardized value
CDPF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66599
YRDC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.33436
Ciliary base	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.056
GSE95077_1_v_4_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE207914_1_v_7_nudt7_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.5677
PLCD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27922
PMC11694450-Table_1.xlsx-MR_to_MM_at_2_DPI-Supplementary_Table_1_1_Differentially_expressed_genes_in_the_cecal_tonsil_transcriptome_in_the_M_R_group_compared_to_the_M_M_group_at_2_DPI_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
PEX12	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0097
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6113
FAM210A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04195
SYN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22533
GSE126402_5_v_3_tal1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
RABGEF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36684
GTF2H1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42045
PSMA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1513
RPS10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14787
GSE151090_0_v_3_verteporfin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0
ZC3H12C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03906
GSE180200,GSE180201_5_v_1_qpctl_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Situs inversus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.546
DDX52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.2864
KCTD21	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57171
GSE104022_3_v_7_tamoxifen_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE164874_5_v_14_prednisolone_human	RummaGEO Drug Perturbation Signatures	1.0	null
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0455
MARF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10855
GSE103068_0_v_4_volasertib_human	RummaGEO Drug Perturbation Signatures	1.0	null
PMC10319804-41467_2023_38747_MOESM10_ESM.xlsx-cARID1A_KD_genes_down-gene_name_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF551	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73601
C11orf54	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53885
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1519
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-12-HIVEP3_HIVEP3	Rummagene Transcription Factor Associations 2026	1.0	null
MYH9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30811
GSE167474_1_v_0_naa40_human	RummaGEO Gene Perturbation Signatures	1.0	null
TEX13B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.33838
C19orf53	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42035
H1-7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.92586
Tadpole	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.884
NVL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.16408
LRRC75B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.34798
AJUBA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00618
C15orf62	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66801
PMC9385264-NIHMS1828071-supplement-8.xlsx-ESR1-gene_symbol_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
FECH	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12558
CCDC92B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.76648
TRAPPC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.42262
CLPSL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00968
WSB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51173
ZFYVE26	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41891
PMC10039511-12864_2023_9238_MOESM1_ESM.xlsx-FOXO1_group-Unnamed_1_FOXO1	Rummagene Transcription Factor Associations 2026	1.0	null
SNX16	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30994
ATR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.83225
ELOC	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18734
GSE160373_8_v_7_pparg_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE204832_0_v_1_imiquimod_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
REXO5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22164
TSPAN6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75252
ELK4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4972
ARID4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81512
GSE211177,GSE211178_9_v_3_ets1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE171175,GSE171181_1_v_2_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
ATAT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15961
GAB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35292
PKN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66674
MAZ	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	72.4092
MOB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1488
SBK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7118
ELK1::SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6727
GSE248045,GSE248046_4_v_1_runx1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
FOXL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29855
GSE171175,GSE171181_1_v_0_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
GSE178292_0_v_3_melphalan_human	RummaGEO Drug Perturbation Signatures	1.0	null
BD-18-MM33_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.539803
GEMIN8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00183
GSE126219_0_v_1_haloperidol_mouse	RummaGEO Drug Perturbation Signatures	1.0	null
GSE146982_7_v_5_gpd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NXF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2678
MARVELD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.50877
GSE207863_0_v_1_hdac5_human	RummaGEO Gene Perturbation Signatures	1.0	null
ABHD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17677
CCT7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91454
MZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.4074
Ciliopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
LMBR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.23871
GSE160373_6_v_2_pparg_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
MUC3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16603
HSBP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.72822
GSTO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06672
TULP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.86952
PAFAH1B2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04998
GSE73381,GSE73382_0_v_1_hira_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PSME2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04333
RIC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.4812
TBCB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59519
TLDC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.1454
PMC6928094-395_2019_765_MOESM7_ESM.xls-DEGs_AR7_vs_Pre-patterned-List_of_differentially_expressed_genes_in_AR7_vs_Pre-patterned_cells_THRA	Rummagene Transcription Factor Associations 2026	1.0	null
GSE155695,GSE155696_1_v_0_acetaminophen_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
FAM98B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63766
JDP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18501
CENPK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09777
MPZL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06889
GSE182680,GSE182683_0_v_11_dexamethasone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ADAD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04312
TMEM249	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.14231
MRPL28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.74856
ZNF10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11768
SIX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.7933
GSE143212_1_v_2_bleomycin_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE103124_1_v_0_bmpr1a_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KNDC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.67776
RBM23	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81286
H4C2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2718
SCN5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.18863
PPAN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.72225
NCAPD3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13215
NUP214	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.29706
MFNG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06358
GSE167474_2_v_0_naa40_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE158834_2_v_5_palmitic acid_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE122425_1_v_0_nsun2_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC10039511-12864_2023_9238_MOESM1_ESM.xlsx-LPS_group-Unnamed_1_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
HOXD11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.1852
USF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.2399
XRCC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40648
MYB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.40378
GSE188721_2_v_1_mesp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE119978,GSE180930_0_v_4_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
ADCK5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.81958
LIG4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06516
TAF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.15815
SGF29	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03432
CRTC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60389
PRKACA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.33848
AUNIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15427
KLK8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.39544
TXNDC9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.41144
SFXN4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.67568
ARCN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.59341
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6048
VPS26C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44212
GSE203329_0_v_3_mettl5_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ABHD15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69599
SCN1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.60902
TMEM11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61246
GSE188721_3_v_1_mesp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE147366_1_v_0_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE80537_3_v_2_adhfe1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.58088
GSE131161_5_v_4_rarres1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
MYG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.87699
GSE114013,GSE114014_1_v_3_itraconazole_human	RummaGEO Drug Perturbation Signatures	1.0	null
HCN3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73345
STAT5A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15614
HAGHL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10693
GSE191105_2_v_4_nat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
PRPF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.89215
ZSCAN25	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15628
FLAD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56376
AA-23-FM46_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.382183
ZNF226	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.35431
GSE121824,GSE121826_0_v_2_scaf8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RAD23B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04668
QC-78-XX98_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.264768
ZNF341	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2525
PRKAG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22102
BD-11-DV28_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.297862
RAB5IF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.00421
ZNF343	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.909
RBM48	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36071
SREK1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.66371
CHMP4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.5299
POMP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43479
NUP160	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27652
ANKRD35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.30515
RPL36A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.96495
GSE127916_1_v_4_nras_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZCCHC10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.82731
GSE171179,GSE171181_0_v_1_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
POU4F3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84337
PSMB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.24695
ARHGAP45	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27902
TNIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.58718
TNKS1BP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15126
ESRP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10611
ZFP36L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54514
CCNB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.08214
GSE117643_1_v_0_irx5_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
TMEM52	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81468
PRPS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44932
TCOF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05393
RAB8B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34395
GSE133329_0_v_3_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE126463_1_v_3_pomalidomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NPLOC4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50372
ENTPD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.85437
GSE183994_1_v_0_scml2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-461-ENSG00000127124_HIVEP3	Rummagene Transcription Factor Associations 2026	1.0	null
VCP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5716
EIF4A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.98056
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2418
TEK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19952
STIP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.05423
Hydrocephalus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.099
GSE126402_4_v_0_tal1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7754
SLC16A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.66662
GSE146982_7_v_5_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TAF4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.40035
MON1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19294
ZNF333	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.19761
GNPTG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03768
SPIN2A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25659
ALG13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.06482
NIBAN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.8918
RNASE4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37727
ACOT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16105
GSE151612_0_v_8_pracinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
WDR20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01196
DDX27	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.49676
SMYD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.32446
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6311
NAPG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5844
KA-63-FH23_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.311693
Visceral heterotaxy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.517
SYVN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.98884
ESYT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02358
Visceral mass	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.871
GSE95077_5_v_3_amiloride_human	RummaGEO Drug Perturbation Signatures	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7127
RPL6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.65988
CRTC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.57294
FUT4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32911
ZYG11B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48016
ANAPC5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.11679
GSE213588_10_v_5_trametinib_human	RummaGEO Drug Perturbation Signatures	1.0	null
MITF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4791
PFDN2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86065
CINP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.18866
GSE146982_3_v_2_gpd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.8264
SWAP70	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44831
EXOSC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.81988
MRPS18B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.564
GSE147366_1_v_4_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
MCM8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18134
PMC8635809-Table_2.xls-LPS-upregulated-Unnamed_4_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
Ampulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.937
CREG1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.56124
NOCT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46568
PMC9424213-41467_2022_32537_MOESM6_ESM.xlsx-siHNRNPK_nuc-DEGs_for_hnRNPK_KD_Nuclear_RNA_of_HeLa_cells_AR	Rummagene Transcription Factor Associations 2026	1.0	null
SLC8B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.71178
HSFY1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59842
NDUFA9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03598
GSE173201_2_v_1_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
RHBDD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.04118
DMRT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.53788
POLR2I	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.21003
FKBP1B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08496
DMAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0347
LKAAEAR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62675
GSE147366_1_v_2_med13_human	RummaGEO Gene Perturbation Signatures	-1.0	null
TMEM102	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.86642
PRDX2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15503
RPA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03221
GSE66931,GSE73382_1_v_0_hira_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
BTBD7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.2361
SLC16A11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.31552
RNF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.21531
DEDD2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.66932
ASPHD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.39581
NOP10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.15218
PMC11811132-41598_2025_89334_MOESM5_ESM.xlsx-MECP2-toNode_MECP2	Rummagene Transcription Factor Associations 2026	1.0	null
TTLL8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.91381
GSE166783_8_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE135705_5_v_3_corticosterone_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
GEN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09332
ROR1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.53265
ZNF358	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06562
FADS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00035
SLC22A31	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01084
RINT1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.69488
GSE179880_7_v_5_e2f4_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.37156
TTC30A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09254
PMC12172627-NIHMS2085635-supplement-5.xlsx-E2F1_GENIE_Results-Unnamed_1_E2F1	Rummagene Transcription Factor Associations 2026	1.0	null
PFDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.29278
GPATCH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.62383
Motile cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.393
SREBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.9304
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6385
GSE224556,GSE224557_8_v_1_aire_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TBCA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20449
GSE171177,GSE171181_1_v_0_e7107_human	RummaGEO Drug Perturbation Signatures	1.0	null
MRPL50	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.1555
PDP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.30389
GSE146982_3_v_2_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RBM22	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.36586
NKX3-1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20541
TELO2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.6817
DRAP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.30245
YAE1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	6.3758
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7435
SYNDIG1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.3166
VCY	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.52806
GTF2E1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.2398
OTUD6B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.83054
PPIE	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28298
AP3S1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10745
PF-59-CY33_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.229698
KLHL4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87587
SRA1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16089
RMI1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.16915
AKAP11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.7566
SLC1A5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.9803
MNT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.35743
ZC3H3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.06592
YD-49-HM53_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.300532
SRPK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.90611
FBXO42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.93566
BCAS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.33414
EIF4EBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59395
RPL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08194
SNAP47	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.8409
MRPS31	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80658
GSE139975_3_v_0_rnf2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
AQR	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37238
FBXL18	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.43935
RRP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63911
ZNF451	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.57265
GSE248045,GSE248046_6_v_1_runx1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SEC23B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.26383
GNAQ	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.4069
GLMN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.58443
RNF40	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.07305
GSE180185_4_v_10_setbp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HSPB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25406
FLII	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.17752
MTMR14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13759
SPRN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40884
Water vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.935
GRPEL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37587
PMC10534007-Table_2.xlsx-S1_overlap_MSC_up_B_V-438_common_elements_in_BFTC905_MSC_up_and_VM-CUB1_MSC_up_MSC	Rummagene Transcription Factor Associations 2026	1.0	null
UPF3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.06883
DCAF4L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41346
BHLHE41	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1938
GSE148252_1_v_6_npas4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
EID2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-4.41042
DPH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96944
GOLGA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.56673
SLC38A5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59929
GSE101239_5_v_1_valproic acid_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
EEF1G	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-7.82121
DIRAS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01082
SPATA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.41016
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.7249
PREP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18213
MDFI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.62358
THYN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.95087
ATN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.37464
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3399
RPS19	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.22492
TP63	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.40163
DAPK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10628
GSE119978,GSE180930_6_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ST6GAL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13395
RPL30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.38296
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.2259
GCH1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.84082
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3262
TFE3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3197
SEC63	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.03807
PRKX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0163
KANK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24201
GSE157282_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Subcommissural organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.419
GSE154081_3_v_2_sildenafil_mouse	RummaGEO Drug Perturbation Signatures	-1.0	null
DCAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.2987
GSE119978,GSE180930_2_v_5_cisplatin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SCRN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.84721
GSE145628,GSE145629_1_v_0_myrf_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE141328_1_v_0_rock2_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Floor plate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.82
ZNF707	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.656
CENPVL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.80226
AASDHPPT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26486
PHB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.44215
ARHGEF15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.90776
P4HB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09887
EIF3J	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.03701
CDC45	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51677
GSE179002_4_v_7_caprin1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6542
ZYX	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34568
PTP4A3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26814
PHC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.45067
PNMA5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.73836
ATP5MGL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.26913
PMC10335698-pone.0285806.s007.xlsx-DMKN-shRNA_KD_Vs_ShSrc-Unnamed_9_AR	Rummagene Transcription Factor Associations 2026	1.0	null
DBI	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50411
YA-78-MS95_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.4059
CBX4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.02854
EP400	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.73985
GSE182680,GSE182683_10_v_12_dexamethasone_human	RummaGEO Drug Perturbation Signatures	1.0	null
RAD51D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.78624