association	dataset	threshold value	standardized value
hsa-miR-3133	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837281
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976779
hsa-miR-3936	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.68747
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	-1.0	-1.35198
Breast	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
COPS4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15546
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25926
regulation of macromolecule biosynthetic process	GO Biological Process Annotations 2025	1.0	null
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6604
GSE74251_0_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3208
PAX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5324
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947302
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.953006
CA9-22	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE195559_6_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
KMRC3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80111
esophagus	HPA Tissue Protein Expression Profiles	1.0	1.17861
Gall bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24311
OC-314	COSMIC Cell Line Gene Mutation Profiles	1.0	null
epididymis	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.3517
DETROIT562	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836759
MEL-HO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837281
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7979
PMC12224929-ADVS-12-2416784-s006.xlsx-DEG_circGLIS3_KD-Unnamed_6_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Health literacy	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.51549
HCC2688	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.50567
CCK-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H2172	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SC-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SK-MEL-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.1828
Female reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MCF-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30306
ECC12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.53165
Mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
FOXO1::FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.4302
BCL2L10	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84519
PMC12246741-MIRNA-14-1-49_SD1.pdf-6-SOX21-AS1_SOX21	Rummagene Transcription Factor Associations 2026	1.0	null
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2942
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5954
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8192
POU3F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.3396
HCC366	CCLE Cell Line Gene CNV Profiles	1.0	1.49972
CML-T1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.31265
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0871
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0433
Urinary tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1684
PMC11982601-IMM-175-84-s005.xlsx-Fig5D_LPS-Innate_IRF6	Rummagene Transcription Factor Associations 2026	1.0	null
NR4A2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.737
DB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
496100525_TCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.31661
cellular_component	GO Cellular Component Annotations 2015	1.0	null
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03456
metal ion binding	GO Molecular Function Annotations 2015	1.0	null
KARPAS-422	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Eccrine sweat gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.849
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8838
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976779
SKMEL2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47184
HS888T	CCLE Cell Line Gene CNV Profiles	1.0	1.56995
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8633
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0987
hsa-miR-4659a-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
regulation of gene expression	GO Biological Process Annotations 2025	1.0	null
ETV5::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.5674
769P	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36182
intracellular	GO Cellular Component Annotations 2015	1.0	null
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00118
769-P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42004
protein ubiquitination	GO Biological Process Annotations 2023	1.0	null
cerebellum	HPA Tissue Protein Expression Profiles	-1.0	-0.876595
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0275
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4558
Urinary system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H1838	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952176
NR4A1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2006
brain	GTEx Tissue Gene Expression Profiles	1.0	1.09595
hsa-miR-188-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.06926
POU2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.9708
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.7233
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.27812
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.7999
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3289
ND-15-RC31_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.20191
Zinc finger, RING/FYVE/PHD-type	InterPro Predicted Protein Domain Annotations	1.0	null
QF-71-QI30_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.39826
soft tissue	HPA Tissue Protein Expression Profiles	-1.0	-0.785163
Head	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06271
hsa-miR-802	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
cation binding	GO Molecular Function Annotations 2015	1.0	null
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.09907
WDR89	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.19429
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7488
hsa-miR-641	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
hsa-miR-4457	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1122
PMC10794847-mmc3.xlsx-PBRM1_KD_down-Table_S2_Differentially_expressed_genes_with_PBRM1_knockdown_in_the_differentiation_state_Related_to_Figure_2_AR	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	80.7939
hsa-miR-3617	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
HSC-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.4052
496100467_FWM_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.32164
PECAPJ41CLONED2	CCLE Cell Line Gene CNV Profiles	1.0	1.59872
PMC8120133-supplementarytables_ddab063.xlsx-Table_S2-Table_S2_Differentially_expressed_genes_in_DUX4-fl_and_DUX4-s_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
ubiquitin-protein transferase activity	GO Molecular Function Annotations 2025	1.0	null
Trunk	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-N87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MDA-MB-453	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20805
regulation of macromolecule metabolic process	GO Biological Process Annotations 2023	1.0	null
496100350_FWM_no dementia_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.06788
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3235
LCLC-103H	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1026
oral mucosa	HPA Tissue Protein Expression Profiles	1.0	1.17861
SLVL	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.195
Adrenal gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hsa-miR-548b-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
transition metal ion binding	GO Molecular Function Annotations 2015	1.0	null
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.32519
cerebral cortex	HPA Tissue Protein Expression Profiles	-1.0	-0.965954
KATO III	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.902257
SNU-C2B	COSMIC Cell Line Gene Mutation Profiles	1.0	null
496100371_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.55886
BCP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52887
NCI-H1755	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SKNAS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51919
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00118
OVCA 432	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952176
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0452
hsa-miR-3916	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976779
NCI-H1792	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.937156
A-498	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947302
RVH421	CCLE Cell Line Gene CNV Profiles	1.0	1.80512
Internal female genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCIH211	CCLE Cell Line Gene CNV Profiles	1.0	1.5007
PA-TU-8902	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-944	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
CAL148	CCLE Cell Line Gene CNV Profiles	-1.0	-2.66139
KARPAS422	CCLE Cell Line Gene CNV Profiles	1.0	1.73024
hsa-miR-655	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Zinc finger, B-box	InterPro Predicted Protein Domain Annotations	1.0	null
POU6F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3598
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_2_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2641
MDA-MB-134-VI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.42004
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4506
A-431	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.024
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3656
hsa-miR-577	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
LS123	CCLE Cell Line Gene CNV Profiles	1.0	1.37217
PMC5446900-NIHMS72240-supplement-Table_S1.xlsx-Table_S1-Table_S1_Genes_differentially_expressed_in_human_primary_myoblasts_upon_ectopic_expression_of_DUX4_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5932
PL18	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.32901
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8084
496100663_TCx_no dementia_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.49199
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5078
Gastroesophageal junction	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.623
PITX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3388
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9445
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.7017
OVCAR-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36975
KU812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30041
hsa-miR-323b-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
MEOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.783
Glomangioma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.276
Male reproductive organ benign neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.144
LN-229	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.25926
plasma membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
protein modification by small protein conjugation	GO Biological Process Annotations 2023	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.979215
GSE122425_1_v_0_nsun2_human	RummaGEO Gene Perturbation Signatures	-1.0	null
NCI-H1105	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE163240_3_v_0_enzalutamide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	4.52587
EA-18-FP00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.294315
hsa-miR-374c	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2012
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.1141
RORC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5921
CORL23	CCLE Cell Line Gene CNV Profiles	1.0	2.34382
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8123
TC-71	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14051
ubiquitin-protein transferase activity	GO Molecular Function Annotations 2023	1.0	null
KYSE-450	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64212
SK-MEL-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.6235
NCIH2122	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05761
RAMOS-2G6-4C10	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06334
SNU886	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77136
MKN45	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
HOXB7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8329
hsa-miR-506	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
HOXC8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.9019
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.811
hsa-miR-500a-3p	MiRTarBase microRNA Targets	1.0	null
Pitt-Hopkins syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.016
hsa-miR-1343	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
Urinary bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
COR-L95	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SW1710	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82407
496100529_HIP_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.23396
KPL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06271
hsa-miR-654-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
JHOM1	CCLE Cell Line Gene CNV Profiles	1.0	1.79293
496100618_PCx_probable Alzheimer's disease_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33208
VCAP	CCLE Cell Line Gene CNV Profiles	1.0	1.77208
hsa-miR-2052	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4172
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3409
POU3F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.3082
OVTOKO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.024
Benign perivascular tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.26
hsa-miR-583	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Oral mucosa	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9431
POU5F1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5991
MCF7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4279
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.873469
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9505
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1896
Lymphoid tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.836515
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.8793
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.7047
EKVX	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SLR21	CCLE Cell Line Gene CNV Profiles	-1.0	-1.62339
hippocampus	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
Zinc finger, RING-type	InterPro Predicted Protein Domain Annotations	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44756
hsa-miR-676	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.92649
hsa-miR-3672	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
SW982	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9619
appendix	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
lateral ventricle	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
MEF2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8073
NCIH1435	CCLE Cell Line Gene CNV Profiles	1.0	2.0821
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.1916
binding	GO Molecular Function Annotations 2015	1.0	null
hsa-miR-542-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
NCI-H1703	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Thorax	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NU-DUL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.44756
doxorubicin_homo sapiens_gpl10558_gse42531	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.5974
ubiquitin-like protein ligase activity	GO Molecular Function Annotations 2023	1.0	null
vagina	HPA Tissue Protein Expression Profiles	1.0	1.17861
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.1019
COLO 857	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.84272
Sebum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.732
CAMA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14051
GSE168401_1_v_3_harmine_human	RummaGEO Drug Perturbation Signatures	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.351
Esophagus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
adrenal gland	HPA Tissue Protein Expression Profiles	1.0	1.17861
Hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hsa-miR-3134	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
POU2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3879
MKN-74	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.826303
CHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0987
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.30375
Embryonic structure	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MKN45	CCLE Cell Line Gene CNV Profiles	1.0	3.11846
SBC-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Calcaneal bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.495
NCI-H196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.94302
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.8229
ED-84-WW97_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.213985
NKX6-1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8315
SNU761	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83612
BFTC909	CCLE Cell Line Gene CNV Profiles	-1.0	-1.91073
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	1.0	2.60871
GSE240386,GSE242143_1_v_4_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
ECGI10	CCLE Cell Line Gene CNV Profiles	1.0	1.4727
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.5517
COLO 680N	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94852
HT	CCLE Cell Line Gene CNV Profiles	1.0	1.49836
C2BBE1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.91925
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14421
cell part	GO Cellular Component Annotations 2015	1.0	null
zinc ion binding	GO Molecular Function Annotations 2015	1.0	null
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7222
hsa-miR-2355-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
MEOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.4793
SPRY domain	InterPro Predicted Protein Domain Annotations	1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.1734
CACO-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.862042
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.2458
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.12
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5059
ubiquitin protein ligase activity	GO Molecular Function Annotations 2025	1.0	null
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17571
ATF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8423
hsa-miR-4659b-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
NCI-H250	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HS821T	CCLE Cell Line Gene CNV Profiles	1.0	1.90013
496100466_PCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.71701
GSE195559_8_v_1_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.2011
Immune system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
RHOXF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4733
KMS-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.87616
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.73965
MDN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44617
hsa-miR-129-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40418
hsa-miR-4777-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
NCI-H929	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.78988
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.952176
JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5695
496100367_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	6.3761
hsa-miR-3125	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
POU3F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4029
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1637
B30.2/SPRY domain	InterPro Predicted Protein Domain Annotations	1.0	null
SW48	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ubiquitin protein ligase activity	GO Molecular Function Annotations 2023	1.0	null
HARA	CCLE Cell Line Gene CNV Profiles	-1.0	-2.8456
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43548
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67237
SNG-M	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Concanavalin A-like lectin/glucanase domain	InterPro Predicted Protein Domain Annotations	1.0	null
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8404
496100492_TCx_probable Alzheimer's disease_no TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.12976
CW-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.113
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06271
HCC364	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.851422
E2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8179
bone marrow	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
OCILY10	CCLE Cell Line Gene CNV Profiles	1.0	1.76955
hsa-miR-556-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
HOXB13	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5027
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.82407
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17145
EN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Female reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
COLO 853	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.89249
ubiquitin-like protein ligase activity	GO Molecular Function Annotations 2025	1.0	null
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0684
KYSE-70	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.87672
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.579
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.2308
NCI-H810	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6846
GSE160817_4_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Excretory gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
REL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4706
PITX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7471
SJSA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38857
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14051
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
JF-76-BD96_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.224678
496100459_PCx_no dementia_no TBI_89_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.94321
Vagina	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
membrane	LOCATE Predicted Protein Localization Annotations	1.0	null
Apocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9113
T-T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MEWO	CCLE Cell Line Gene CNV Profiles	-1.0	-1.43356
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.1098
SNU-668	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16433
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.925764
hsa-miR-567	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.8398
hsa-miR-124	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
KASUMI-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
496100414_TCx_probable Alzheimer's disease_no TBI_87_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.07018
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9119
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.774
COLO680N	CCLE Cell Line Gene CNV Profiles	1.0	2.14458
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.2715
8MGBA	CCLE Cell Line Gene CNV Profiles	-1.0	-1.33601
UACC893	CCLE Cell Line Gene CNV Profiles	1.0	1.34289
COLO829	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1833
GSE172016_2_v_5_paclitaxel_human	RummaGEO Drug Perturbation Signatures	-1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
GSE138633_2_v_0_bag3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7467
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	1.83513
TE-5	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SNU-216	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.03561
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
Prostatic adenoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.344
hsa-miR-2054	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2976
regulation of gene expression	GO Biological Process Annotations 2023	1.0	null
FOXO1::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4343
GLIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.2263
SCABER	CCLE Cell Line Gene CNV Profiles	1.0	1.41604
PMC11392820-41556_2024_1475_MOESM3_ESM.xlsx-Supplementary_Table_9-Supplementary_Table_9_Expression_level_of_OTX2_targeted_genes_n_999_related_to_Figure_6_OTX2	Rummagene Transcription Factor Associations 2026	1.0	null
hsa-miR-4311	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.002
LN229	CCLE Cell Line Gene CNV Profiles	-1.0	-1.7296
RCC4	CCLE Cell Line Gene CNV Profiles	1.0	1.36127
BFTC-909	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976779
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0272
JHH-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976779
MEIS2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4825
hsa-miR-3123	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
496100609_TCx_no dementia_no TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.18232
NCIH196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86036
DD-49-YG96_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.281578
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0247
HCC-15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17673
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5896
496100624_PCx_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.72464
MEWO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.40418
molecular_function	GO Molecular Function Annotations 2015	1.0	null
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.9047
GSE130956_0_v_3_icaritin_human	RummaGEO Drug Perturbation Signatures	1.0	null
placenta	HPA Tissue Protein Expression Profiles	1.0	1.17861
496100452_HIP_possible Alzheimer's disease_no TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.08467
HOXA3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.564
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3576
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8321
SK-N-FI	COSMIC Cell Line Gene Mutation Profiles	1.0	null
COV504	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.911744
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.17861
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.955055
OE19	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
PANC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06049
PMC8791933-41598_2022_4817_MOESM3_ESM.xlsx-DUX4_signature_genes-Unnamed_1_DUX4	Rummagene Transcription Factor Associations 2026	1.0	null
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.24641
GSE180185_9_v_10_setbp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.1788
ZNF24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8178
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67237
SF126	COSMIC Cell Line Gene Mutation Profiles	1.0	null
EPLC-272H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.39417
Cysteine synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.102
Organism form	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.8033
Kidney	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H522	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947878
retromer, cargo-selective complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.134
CAMA1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3295
GSE195559_8_v_5_notch1_human	RummaGEO Gene Perturbation Signatures	1.0	null
MEF2D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.585
GSE246983_1_v_0_cdk12_human	RummaGEO Gene Perturbation Signatures	1.0	null
Merocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.849
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	1.57331
Placenta	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
spleen	HPA Tissue Protein Expression Profiles	-1.0	-1.31332
Butyrophylin-like	InterPro Predicted Protein Domain Annotations	1.0	null
HOXB6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0665
NCI-H1563	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC8390644-41467_2021_25107_MOESM6_ESM.xlsx-Naive_BRM-KD_significant-gene_AR	Rummagene Transcription Factor Associations 2026	1.0	null
TE4	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61158
NCI-H727	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
DAOY	COSMIC Cell Line Gene Mutation Profiles	1.0	null
RARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2236
SNU1196	CCLE Cell Line Gene CNV Profiles	-1.0	-2.10627
Stomach disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.177
bladder	GTEx Tissue Gene Expression Profiles	1.0	0.862781
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	1.17861
NCIH1694	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69826
hsa-miR-633	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
OCRL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23864
COV362	CCLE Cell Line Gene CNV Profiles	1.0	1.52587
NCI-H1573	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.78701
GI-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ME-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.15144
PMC8586238-41467_2021_26788_MOESM6_ESM.xlsx-S2A_CDE_genes-S2A_CDE_-_genes_of_the_two_CCD_genes_RUNX2	Rummagene Transcription Factor Associations 2026	1.0	null
ion binding	GO Molecular Function Annotations 2015	1.0	null
Epstein-Barr virus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.251
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.3939
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20805
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.49149
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14051
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9012
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0959
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4422
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05569
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3444
496100632_HIP_no dementia_TBI_95-99_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.82747
KHM-1B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49964
SNU-638	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.875014
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.837281
NCI-H1092	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.9611
496100409_FWM_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.00049
496100521_HIP_no dementia_no TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.00241
HOXB5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.8547
H3C3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.47332
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.947302
639-V	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SW 837	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.902257
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6548
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8609
SK-MEL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5875
NCI-H1435	COSMIC Cell Line Gene CNV Profiles	1.0	2.12225
DMRTC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9672
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.45998
Mouth	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.7704
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9527
A172	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0987
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19191
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06334
Bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
MDAMB134VI	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49238
POU2F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5896
BE2-M17	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H727	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10327
Integument	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091