association	dataset	threshold value	standardized value
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	179.798
SPI1	ENCODE Transcription Factor Targets	1.0	null
LXFL529	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
UKE-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.044
NAMALWA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
FOSL2_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Vascular endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.131
OCI-LY-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.603
JUND	ENCODE Transcription Factor Targets	1.0	null
SU-DHL-5	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14833
Umbilical cord blood cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.004
496100431_FWM_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.39155
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
PE/CA-PJ15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09193
TCF12	ENCODE Transcription Factor Targets	1.0	null
INSM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.5417
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.6016
PMC10350819-EMBJ-42-e113168-s007.pdf-105-ENSG00000175550_DRAP1	Rummagene Transcription Factor Associations 2026	1.0	null
HS 255.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
nucleosome assembly	GO Biological Process Annotations 2015	1.0	null
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0249
GSE240386,GSE242143_1_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.9575
GSE188570,GSE188571_5_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CAL51	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
DMS 79	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.06956
cellular component assembly	GO Biological Process Annotations 2015	1.0	null
SET-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28412
Human brain microvascular endothelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.26
LS1034	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97372
NCIH1836	CCLE Cell Line Gene CNV Profiles	-1.0	-1.39951
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	2.28529
MEG01	CCLE Cell Line Gene CNV Profiles	1.0	2.49945
cellular component organization	GO Biological Process Annotations 2015	1.0	null
protein-dna complex subunit organization	GO Biological Process Annotations 2015	1.0	null
bladder	GTEx Tissue Gene Expression Profiles	1.0	1.07907
Nucleosome assembly protein (NAP)	InterPro Predicted Protein Domain Annotations	1.0	null
mesenchyme development	GO Biological Process Annotations 2015	1.0	null
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.35564
NCIH810	CCLE Cell Line Gene CNV Profiles	1.0	1.33221
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9037
RAMOS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1605
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.4131
HCC12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
macromolecular complex assembly	GO Biological Process Annotations 2015	1.0	null
SK-OV-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
496100477_HIP_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.67377
KPNSI9S	CCLE Cell Line Gene CNV Profiles	1.0	1.56738
IPC-298	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
JUND_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CL-11	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23871
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.5412
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14437
spermatogenesis	GO Biological Process Annotations 2015	1.0	null
REST	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.1161
KMS28BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57841
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
F36P	CCLE Cell Line Gene CNV Profiles	1.0	1.88626
reproductive structure development	GO Biological Process Annotations 2015	1.0	null
NCI-H2595	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0249
496100314_HIP_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39453
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.4769
PMC10350819-EMBJ-42-e113168-s003.pdf-11-DRAP1_DRAP1	Rummagene Transcription Factor Associations 2026	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.850426
496100654_HIP_no dementia_no TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.51194
GSE160817_7_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
male gamete generation	GO Biological Process Annotations 2015	1.0	null
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
PMC6639357-41467_2019_11150_MOESM4_ESM.xlsx-SupTab1_Activated_genes_diffex-Supplementary_Data_1_Fold_change_and_p-value_of_all_activated_protein_coding_genes_upon_DNMT1-KO_DNMT1	Rummagene Transcription Factor Associations 2026	1.0	null
KP3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.90293
Edwards syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.149
CTCF	ENCODE Transcription Factor Targets	1.0	null
DMS 454	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865206
COV318	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76557
CORL47	CCLE Cell Line Gene CNV Profiles	1.0	1.56556
GSE135312_1_v_2_bmpr2_human	RummaGEO Gene Perturbation Signatures	1.0	null
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.4105
Chromosomal duplication syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.225
SCC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
KG1C	CCLE Cell Line Gene CNV Profiles	1.0	1.71826
SIN3A	ENCODE Transcription Factor Targets	1.0	null
G-402	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942006
GSE223893_2_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100408_PCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.79174
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5762
Patau syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.16
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.864785
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.948991
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7143
nucleus	GO Cellular Component Annotations 2025	1.0	null
MT-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
SK-MEL-28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
membrane-bounded organelle	GO Cellular Component Annotations 2015	1.0	null
Spermatogenic failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
stomach	HPA Tissue Protein Expression Profiles	1.0	1.75067
ZNF454	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	122.441
KNS42	CCLE Cell Line Gene CNV Profiles	-1.0	-1.68043
BJAB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97372
JHH2	CCLE Cell Line Gene CNV Profiles	1.0	2.11344
multicellular organismal reproductive process	GO Biological Process Annotations 2015	1.0	null
NU-DUL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28656
Down syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
HCC38	CCLE Cell Line Gene CNV Profiles	-1.0	-2.03923
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.8828
A549	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825095
DRM complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.766
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.474
CL-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.044
ZNF784	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6312
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825506
cell part	GO Cellular Component Annotations 2015	1.0	null
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
HMY-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825095
BEN	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2033
COV434	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.60357
CL-40	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.4296
FARAGE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
ZNF669	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.345
HL-60	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28412
ML-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
496100413_FWM_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	7.94538
COR-L279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09193
ZNF213	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	70.1456
Brain endothelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.224
developmental process involved in reproduction	GO Biological Process Annotations 2015	1.0	null
HCC2935	CCLE Cell Line Gene CNV Profiles	1.0	1.41951
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13413
M059J	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38241
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.4
NCI-H292	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
RERF-LC-KJ	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825506
EB1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.83449
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	199.087
CA46	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
CAL33	CCLE Cell Line Gene CNV Profiles	1.0	1.84061
MDA-MB-157	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
ZBTB33_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
SK-MM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
647V	CCLE Cell Line Gene CNV Profiles	1.0	1.54994
USF1	ENCODE Transcription Factor Targets	1.0	null
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11327
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.0589
adrenal gland	HPA Tissue Protein Expression Profiles	1.0	0.917838
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
ESR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1915
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
HS 839.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
testis	HPA Tissue Protein Expression Profiles	1.0	0.917838
cellular process	GO Biological Process Annotations 2015	1.0	null
heart	GTEx Tissue Gene Expression Profiles	-1.0	-0.846051
HCC1482	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942006
ZNF682	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.6059
mesoderm development	GO Biological Process Annotations 2015	1.0	null
496100556_TCx_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.54216
intracellular organelle	GO Cellular Component Annotations 2015	1.0	null
Outer acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.368
LS180	CCLE Cell Line Gene CNV Profiles	-1.0	-1.74039
USF1_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HEC108	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78066
UBC	Pathway Commons Protein-Protein Interactions	1.0	null
NCIH508	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55283
Phagophore assembly site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.711
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6322
HCA-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28412
KMS21BM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.82094
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
Acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.152
U343	CCLE Cell Line Gene CNV Profiles	1.0	1.84406
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916242
KMS34	CCLE Cell Line Gene CNV Profiles	-1.0	-1.45026
KE39	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5719
FOSL2	ENCODE Transcription Factor Targets	1.0	null
cellular component organization or biogenesis	GO Biological Process Annotations 2015	1.0	null
cellular developmental process	GO Biological Process Annotations 2015	1.0	null
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.3913
protein-dna complex assembly	GO Biological Process Annotations 2015	1.0	null
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.997695
SU-DHL-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14833
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.865206
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
GOS3	CCLE Cell Line Gene CNV Profiles	1.0	1.9672
biological_process	GO Biological Process Annotations 2015	1.0	null
TCF12_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09193
RXRA	ENCODE Transcription Factor Targets	1.0	null
nucleus	GO Cellular Component Annotations 2015	1.0	null
A-427	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.97372
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825506
ATRFLOX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942006
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28656
NCI-H1155	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
496100371_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.94285
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.0367
SP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	78.5573
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	222.951
IM-95	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.8799
M059K	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33747
GDM1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40781
PMC10350819-EMBJ-42-e113168-s007.pdf-105-DRAP1_DRAP1	Rummagene Transcription Factor Associations 2026	1.0	null
TF1	CCLE Cell Line Gene CNV Profiles	1.0	1.36317
NCI-H2106	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.11327
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
NCI-H2369	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.13413
SP1	ENCODE Transcription Factor Targets	1.0	null
macromolecular complex subunit organization	GO Biological Process Annotations 2015	1.0	null
gonadal mesoderm development	GO Biological Process Annotations 2015	1.0	null
GP5D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
A2780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
SP1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	1.59768
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14437
cytoplasm	GO Cellular Component Annotations 2015	1.0	null
nucleosome organization	GO Biological Process Annotations 2015	1.0	null
cytoplasmic part	LOCATE Predicted Protein Localization Annotations	1.0	null
cell differentiation	GO Biological Process Annotations 2015	1.0	null
JUND_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
USF1_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SR786	CCLE Cell Line Gene CNV Profiles	-1.0	-1.53978
organelle	GO Cellular Component Annotations 2015	1.0	null
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
golgi apparatus	LOCATE Predicted Protein Localization Annotations	1.0	null
ZR751	CCLE Cell Line Gene CNV Profiles	-1.0	-2.17087
Gonadoblastoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.301
GCM2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.4065
PA-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942006
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
anatomical structure development	GO Biological Process Annotations 2015	1.0	null
NCIH1963	CCLE Cell Line Gene CNV Profiles	1.0	1.53672
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4177
single-organism process	GO Biological Process Annotations 2015	1.0	null
GRANTA-519	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.069
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
GCM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4923
SPI1_GM12891_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chromatin organization	GO Biological Process Annotations 2015	1.0	null
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SNU886	CCLE Cell Line Gene CNV Profiles	1.0	1.40848
ZBTB14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.1148
FOSL2_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
MCF 10A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
Epididymal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.222
KASUMI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14833
GSE184087_4_v_5_tert_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZBTB33	ENCODE Transcription Factor Targets	1.0	null
GSE223893_11_v_10_setd2_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100425_TCx_no dementia_TBI_95-99_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.02473
KLF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	103.575
KLF15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	101.988
Autosomal dominant intellectual developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.701
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2768
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.28656
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6071
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.3998
786O	CCLE Cell Line Gene CNV Profiles	1.0	1.42813
ZBTB33_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE240386,GSE242143_8_v_6_morc2_human	RummaGEO Gene Perturbation Signatures	1.0	null
KM-12	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4498
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.916242
IM-95M	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
496100320_PCx_no dementia_TBI_79_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.95515
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.942006
KARPAS-422	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
reproductive process	GO Biological Process Annotations 2015	1.0	null
EFO-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
protein complex subunit organization	GO Biological Process Annotations 2015	1.0	null
cellular macromolecular complex assembly	GO Biological Process Annotations 2015	1.0	null
HUH-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.825095
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.6886
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9629
SW1710	CCLE Cell Line Gene CNV Profiles	-1.0	-1.371
CTCF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	270.018
HS 895.T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
Secretory granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.918
THAP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9087
single organism reproductive process	GO Biological Process Annotations 2015	1.0	null
intracellular part	GO Cellular Component Annotations 2015	1.0	null
NCIH1563	CCLE Cell Line Gene CNV Profiles	1.0	1.41887
SNU1076	CCLE Cell Line Gene CNV Profiles	1.0	2.84764
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.5939
MKN7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36578
CI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054
Chromosomal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.088
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.044
NCI-H1092	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.890909
RXRA_HepG2_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.856914
NCI-H2081	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
OV56	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37419
GCIY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55093
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
NR2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.029
PMC7825356-8844261.f3.docx-107-TGIF2LY_TGIF2LY	Rummagene Transcription Factor Associations 2026	1.0	null
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.2749
GP2D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
RFX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8292
SUDHL8	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54581
RFX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.9017
496100278_FWM_no dementia_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	12.0449
gamete generation	GO Biological Process Annotations 2015	1.0	null
G402	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44228
SIN3A_HepG2_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Golgi transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.18
single-organism developmental process	GO Biological Process Annotations 2015	1.0	null
NCIH460	CCLE Cell Line Gene CNV Profiles	1.0	1.33604
HCC1534	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.9106
MYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7413
HEC265	CCLE Cell Line Gene CNV Profiles	-1.0	-1.63726
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
OV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.64906
RERFLCMS	CCLE Cell Line Gene CNV Profiles	1.0	1.47621
tissue development	GO Biological Process Annotations 2015	1.0	null
ECC12	CCLE Cell Line Gene CNV Profiles	1.0	1.58653
HIC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.1752
MDST8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
cellular_component	GO Cellular Component Annotations 2015	1.0	null
KMS-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28879
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33072
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02453
developmental process	GO Biological Process Annotations 2015	1.0	null
624 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18996
HCC630	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.940791
RNA polymerase II transcription repressor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.748
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.008
SUM 159PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.940534
Brain microvascular endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.255
PMC10350819-EMBJ-42-e113168-s003.pdf-11-ENSG00000175550_DRAP1	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.82111
PAS complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.138
Microvascular endothelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.141
COV504	CCLE Cell Line Gene CNV Profiles	-1.0	-2.06874
protein complex assembly	GO Biological Process Annotations 2015	1.0	null
NCIH2196	CCLE Cell Line Gene CNV Profiles	1.0	1.84094
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04054