association	dataset	threshold value	standardized value
cervix, uterine	HPA Tissue Protein Expression Profiles	1.0	0.736095
Male reproductive gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6179
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.40745
HS 695T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08795
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79416
HCC1806	CCLE Cell Line Gene CNV Profiles	-1.0	-1.95376
HLFA	CCLE Cell Line Gene CNV Profiles	1.0	1.70338
KP3	CCLE Cell Line Gene CNV Profiles	1.0	1.66062
ECC12	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05819
RT11284	CCLE Cell Line Gene CNV Profiles	1.0	1.34116
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28598
Internal male genital organ	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
prostate	HPA Tissue Protein Expression Profiles	1.0	1.32926
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938616
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37813
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19603
Oviduct	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Metabolism of proteins	Reactome Pathways 2024	1.0	null
MDA-MB-330	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.62118
496100468_PCx_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.03448
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	96.2452
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	218.636
fallopian tube	HPA Tissue Protein Expression Profiles	1.0	1.32926
496100291_TCx_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.59519
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	1.73114
deubiquitinase activity	GO Molecular Function Annotations 2023	1.0	null
cysteine-type deubiquitinase activity	GO Molecular Function Annotations 2023	1.0	null
regulation of programmed cell death	GO Biological Process Annotations 2025	1.0	null
Urinary tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02444
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00958
regulation of apoptotic process	GO Biological Process Annotations 2025	1.0	null
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964955
TOV21G	CCLE Cell Line Gene CNV Profiles	1.0	2.3175
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17725
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2719
HLF	CCLE Cell Line Gene CNV Profiles	1.0	1.44563
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54773
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6525
496100303_HIP_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.39942
PMC8423434-mmc7.xlsx-KLF4_HENSM-Genes_n_2172_KLF4	Rummagene Transcription Factor Associations 2026	1.0	null
GSE181517_2_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Gall bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04445
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4245
496100307_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.08929
Male reproductive system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52074
UMUC1	CCLE Cell Line Gene CNV Profiles	1.0	2.16729
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8282
496100555_TCx_no dementia_no TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.04601
VMRCLCD	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51354
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30674
496100505_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.9994
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2936
Colorectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46058
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30674
GSE180185_7_v_10_setbp1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.599
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.7078
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
cysteine-type peptidase activity	GO Molecular Function Annotations 2023	1.0	null
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
GSE135400_2_v_0_kdm1b_human	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6631
GSE160817_5_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE144745_0_v_1_mettl4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21283
GSE181461_1_v_4_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7381
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54068
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8105
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-2.68669
Rectum	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
cerebellum	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.156
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
GSE160817_7_v_9_slamf6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
RERFLCAD1	CCLE Cell Line Gene CNV Profiles	1.0	2.04563
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.46108
PMC8242083-41467_2021_24064_MOESM4_ESM.txt--HSF1_HSF1	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate gland	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70088
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54068
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54844
NCIH1693	CCLE Cell Line Gene CNV Profiles	1.0	1.69079
nucleus	GO Cellular Component Annotations 2023	1.0	null
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8265
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3781
cysteine-type endopeptidase activity	GO Molecular Function Annotations 2023	1.0	null
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69525
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04445
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34595
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42205
TCF4-32651957-PLC/PRF/5-HUMAN-LIVER-HEPTOMA	ChEA Transcription Factor Targets 2022	1.0	null
urinary bladder	HPA Tissue Protein Expression Profiles	1.0	1.32926
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0547
HCC2279	CCLE Cell Line Gene CNV Profiles	1.0	1.55036
NCIH358	CCLE Cell Line Gene CNV Profiles	1.0	1.33632
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1248
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	144.878
lateral ventricle	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5454
SKMEL1	CCLE Cell Line Gene CNV Profiles	1.0	3.27631
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893239
Post-translational protein modification	Reactome Pathways 2024	1.0	null
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26056
Skin squamous cell carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.526
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53906
SET2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47126
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.6208
Immune system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hippocampus	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
stomach	HPA Tissue Protein Expression Profiles	1.0	0.736095
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.32926
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1248
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7034
NCIH1373	CCLE Cell Line Gene CNV Profiles	1.0	1.42321
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82084
GSE181517_0_v_1_doxorubicin_human	RummaGEO Drug Perturbation Signatures	1.0	null
496100549_FWM_no dementia_TBI_87_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.11216
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
GSE172189_0_v_1_venetoclax_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GATA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7381
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23641
liver	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3567
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60635
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1165
GSE139455_2_v_5_stat3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
496100391_FWM_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.52725
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14515
regulation of programmed cell death	GO Biological Process Annotations 2023	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6492
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4861
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5585
Viscus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50322
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6179
Gastrointestinal tract	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.958
GSE135400_1_v_0_kdm1b_human	RummaGEO Gene Perturbation Signatures	1.0	null
496100476_TCx_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.16392
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65384
GSS	CCLE Cell Line Gene CNV Profiles	-1.0	-2.8155
Alimentary canal	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19603
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9225
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6404
MHHES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77702
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976613
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.66825
pre-replicative complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.814
SNU16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49099
Decidua basalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.121
Microtubule organizing center attachment site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.223
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1172
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0034
496100641_PCx_no dementia_no TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.11064
Uterus	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCIH1436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55493
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
496100577_FWM_probable Alzheimer's disease_TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.0071
deubiquitinase activity	GO Molecular Function Annotations 2025	1.0	null
Lipopolysaccharide receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.969
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14434
Lymphoid tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.442
HOS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65179
protein modification by small protein removal	GO Biological Process Annotations 2023	1.0	null
cysteine-type deubiquitinase activity	GO Molecular Function Annotations 2025	1.0	null
SH10TC	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1676
496100651_FWM_probable Alzheimer's disease_TBI_83_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.46214
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2936
Ub-specific processing proteases	Reactome Pathways 2024	1.0	null
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4949
JK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37771
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
PMC6961462-NIHMS1544104-supplement-Sup_Tab.xlsx-Sup_Table_3_a-Supplementary_Table_3_Genes_Regulated_by_A_MYB_in_Humans_and_Macaques_Bold_genes_with_reduced_expression_in_Group_3_MYB	Rummagene Transcription Factor Associations 2026	1.0	null
Colon	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NB4	CCLE Cell Line Gene CNV Profiles	1.0	1.44418
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00426
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
KNS62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86965
Skin carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2992
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
Large intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14664
496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.77325
epididymis	HPA Tissue Protein Expression Profiles	1.0	1.32926
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72314
Deubiquitination	Reactome Pathways 2024	1.0	null
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
Intestine	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6534
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33498
SW1710	CCLE Cell Line Gene CNV Profiles	1.0	2.49101
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38038
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79249
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905023
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.087
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3543
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23641
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42358
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
rectum	HPA Tissue Protein Expression Profiles	1.0	1.32926
protein deubiquitination	GO Biological Process Annotations 2023	1.0	null
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.599
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.39558
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38076
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2023	1.0	null
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2211
Urinary system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8783
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5859
Nuclear membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.243
496100523_HIP_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-3.42451
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38076
cerebral cortex	HPA Tissue Protein Expression Profiles	-1.0	-0.903885
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78493
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	2.07461
endopeptidase activity	GO Molecular Function Annotations 2023	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
Nuclear membrane microtubule tethering complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.269
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6176
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	1.3436
TGBC11TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66854
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34595
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828501
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0624
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8627
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2129
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9564
GSE149901_2_v_1_anlotinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Epididymis	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMC12719073-mmc1.pdf-14-MYSM1_MYSM1	Rummagene Transcription Factor Associations 2026	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81586
cysteine-type peptidase activity	GO Molecular Function Annotations 2025	1.0	null
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976613
Connective tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
496100616_FWM_no dementia_TBI_84_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.14556
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905023
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9613
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02719
regulation of apoptotic process	GO Biological Process Annotations 2023	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0127
496100292_PCx_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.15242
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.78257
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58846
REH	CCLE Cell Line Gene CNV Profiles	1.0	1.41854
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977474
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1787
intracellular membrane-bounded organelle	GO Cellular Component Annotations 2025	1.0	null
Meiotic nuclear membrane microtubule tethering complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.269
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14664
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5763
TRPS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5529
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	88.9034
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8567
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5633
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	91.5095
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1025
NCIH1341	CCLE Cell Line Gene CNV Profiles	1.0	1.45256
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.39131
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65369
AMO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50322
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	1.33471
HS852T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48869
ovary	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
496100277_FWM_no dementia_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.88371
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
Stomach	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
Uterine cervix	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Urinary bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
U343	CCLE Cell Line Gene CNV Profiles	1.0	1.70306
GSE232558_0_v_2_fbxl12_human	RummaGEO Gene Perturbation Signatures	1.0	null
GSE142210_2_v_6_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829994
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4583
Psoriatic arthritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.213
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977474
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.1006
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
Bladder	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
PMC12081856-41420_2025_2522_MOESM6_ESM.xlsx-Sheet_1-Table_S4_Complete_Gene_List_of_the_MEblack_Gene_Module_and_the_DUB_Family_ZUP1	Rummagene Transcription Factor Associations 2026	1.0	null
496100554_FWM_no dementia_no TBI_78_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-2.22151
496100527_FWM_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	-1.0	-3.92315
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5658
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52074
PMC11827247-41065_2025_387_MOESM5_ESM.xlsx-Sheet_1-Only_ESR_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
parathyroid gland	HPA Tissue Protein Expression Profiles	-1.0	-1.44517
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18444
REC1	CCLE Cell Line Gene CNV Profiles	1.0	1.72767
nucleus	GO Cellular Component Annotations 2025	1.0	null
496100438_PCx_possible Alzheimer's disease_no TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.0885