association	dataset	threshold value	standardized value
H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52074
BATF::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7034
35 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.846
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4949
Childhood Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
Meiotic nuclear membrane microtubule tethering complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.145
Intracellular organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
CAPAN-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14664
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_5_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
HGC-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
HS 695T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.08795
TGBC11TKB	CCLE Cell Line Gene CNV Profiles	-1.0	-1.66854
Secondary Malignant Neoplasm Of Lung	DisGeNET Gene-Disease Associations	1.0	null
SUPHD1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81586
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2986
NCI-H2009	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42205
NCI-H2452	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
SNU601	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26056
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21283
membrane-enclosed lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
HBL-100	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977474
EGR3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.9719
SKMEL1	CCLE Cell Line Gene CNV Profiles	1.0	3.27631
HS729	CCLE Cell Line Gene CNV Profiles	1.0	1.62118
HCC2279	CCLE Cell Line Gene CNV Profiles	1.0	1.55036
HS695T	CCLE Cell Line Gene CNV Profiles	1.0	1.73114
Organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
REC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00958
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5454
496100424_FWM_probable Alzheimer's disease_TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.38174
Glucocorticoid Receptor Deficiency	DisGeNET Gene-Disease Associations	1.0	null
Nucleus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
KLF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	90.9662
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.3781
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.2792
SCC-25	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38076
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7381
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.6404
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	2.07461
HCC70	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.828501
PMC9574515-mmc1.xls-THP1_0_min_GM-CSF-Target_Gene_Symbol_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
RT-112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.17725
E2F4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.0624
Human cytomegalovirus infection	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.059
CA SKI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14515
NCI-H2803	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905023
NCI-H358	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
496100573_HIP_no dementia_no TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.00427
PROX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2719
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7198
786-O	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.829994
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9613
PMC12719073-mmc1.pdf-24-DUB_ZUP1	Rummagene Transcription Factor Associations 2026	1.0	null
Tachyzoite	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.723
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6525
NCIH1436	CCLE Cell Line Gene CNV Profiles	-1.0	-1.55493
KMS-34	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19603
HCC4006	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
EGR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	83.2503
JHH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
HCC366	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04445
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9225
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.0547
RT11284	CCLE Cell Line Gene CNV Profiles	1.0	1.34116
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.977474
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
Intracellular non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
MOLP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976613
NCIH1693	CCLE Cell Line Gene CNV Profiles	1.0	1.69079
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
Neoplasm Metastasis	DisGeNET Gene-Phenotype Associations	1.0	null
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.70088
FOSL2::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.599
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2936
RARA::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.087
NCI-H1568	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.04445
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1248
HCC1576	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
HS 69ST	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.964955
Childhood Solid Neoplasm	DisGeNET Gene-Phenotype Associations	1.0	null
HCC1493	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.42358
Non-Small Cell Lung Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79249
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.00426
AMO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50322
TCF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8627
Microtubule organizing center attachment site	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.099
USF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8105
NCI-H2171	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.2936
CREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6179
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4245
496100589_PCx_dementia_TBI_81_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.1873
REH	CCLE Cell Line Gene CNV Profiles	1.0	1.41854
PAX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7674
REC1	CCLE Cell Line Gene CNV Profiles	1.0	1.72767
Obesity	DisGeNET Gene-Disease Associations	1.0	null
HT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.60635
Gestational trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.077
496100623_PCx_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.07789
NCI-H2810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
HCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
PMC9574515-mmc2.xls-THP1_60_min_GM-CSF-Target_Gene_Symbol_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
K029AX	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3543
WIDR	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34595
SNU-C1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
PK-45P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28598
FOSL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4861
U343	CCLE Cell Line Gene CNV Profiles	1.0	1.70306
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34595
PMC12211354-12915_2025_2224_MOESM6_ESM.xlsx-Sheet1-Sheet1_The_source_list_of_zebrafish_Npas4b_targets_from_human_NPAS4_targets_in_CHEA3_database_NPAS4	Rummagene Transcription Factor Associations 2026	1.0	null
Breast Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
SH10TC	CCLE Cell Line Gene CNV Profiles	-1.0	-2.1676
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33498
HUH-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1248
Nuclear membrane microtubule tethering complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.145
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5633
Foreskin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.825
VEZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.3739
SKNMC	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46058
NCI-H522	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.893239
Tumor Progression	DisGeNET Gene-Phenotype Associations	1.0	null
HLF	CCLE Cell Line Gene CNV Profiles	1.0	1.44563
COLO 320DM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30674
SNU-387	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.18444
NCI-H1770	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.6208
Osteosarcoma	DisGeNET Gene-Disease Associations	1.0	null
RREB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	269.818
PRDM1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.6534
NCIH1651	CCLE Cell Line Gene CNV Profiles	1.0	1.33471
BICR 22	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.65384
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
Nucleolus	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5585
NIH:OVCAR-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
PMC9574515-mmc1.xls-THP1_60_min_GM-CSF-Target_Gene_Symbol_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
KP3	CCLE Cell Line Gene CNV Profiles	1.0	1.66062
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6631
HCC1395	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.39131
non-membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
Glioma	DisGeNET Gene-Disease Associations	1.0	null
membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
NRL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5763
ZSCAN4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	79.7269
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.8265
Synaptic vesicle protein transport vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.12
FOSL1::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.958
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
ELK1::HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6492
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
NCIH1373	CCLE Cell Line Gene CNV Profiles	1.0	1.42321
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.1787
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4583
HS852T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48869
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54773
BATF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8567
LXF-289	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
NCI-H2461	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.02444
SKM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.82084
BCL6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1172
NCI-H1581	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.938616
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_1_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5658
TP53	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9143
KNS62	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86965
FU97	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
PMC9574515-mmc2.xls-THP1_0_min_GM-CSF-Target_Gene_Symbol_GLI2	Rummagene Transcription Factor Associations 2026	1.0	null
BATF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6179
NCIH358	CCLE Cell Line Gene CNV Profiles	1.0	1.33632
NCI-H446	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03948
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3567
HT	CCLE Cell Line Gene CNV Profiles	-1.0	-1.78493
MFM-223	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
NCI-H322T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.52074
NCIH1341	CCLE Cell Line Gene CNV Profiles	1.0	1.45256
MHHES1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77702
Organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
SP8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	73.9204
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6176
HCC1500	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
WSU-NHL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.79416
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.38076
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
NB4	CCLE Cell Line Gene CNV Profiles	1.0	1.44418
Decidua basalis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.954
G111	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.53906
SW1710	CCLE Cell Line Gene CNV Profiles	1.0	2.49101
496100476_TCx_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.33078
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	58.1165
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5859
MHH-ES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02719
HOS	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65179
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.2129
NCI-H2122	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
PE01	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
HCC2218	CCLE Cell Line Gene CNV Profiles	-1.0	-1.58846
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
CFPAC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23641
SNU16	CCLE Cell Line Gene CNV Profiles	-1.0	-1.49099
SK23	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
HEP3B217	CCLE Cell Line Gene CNV Profiles	1.0	1.40745
HCC1806	CCLE Cell Line Gene CNV Profiles	-1.0	-1.95376
RERFLCAD1	CCLE Cell Line Gene CNV Profiles	1.0	2.04563
JK1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37771
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19603
GSS	CCLE Cell Line Gene CNV Profiles	-1.0	-2.8155
Trophoblastic neoplasm	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
FOSL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8783
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.599
UMUC1	CCLE Cell Line Gene CNV Profiles	1.0	2.16729
Solid Neoplasm	DisGeNET Gene-Phenotype Associations	1.0	null
HEP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.09303
KLF11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	105.356
PMC11827247-41065_2025_387_MOESM5_ESM.xlsx-Sheet_1-Only_ESR_ESR1	Rummagene Transcription Factor Associations 2026	1.0	null
496100468_PCx_no dementia_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.6191
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.866072
HLFA	CCLE Cell Line Gene CNV Profiles	1.0	1.70338
NCI-H1373	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.23641
KELLY	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38038
Lupus Erythematosus	DisGeNET Gene-Disease Associations	1.0	null
Chorioretinitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.207
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54068
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.66825
DB	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.976613
RT112	CCLE Cell Line Gene CNV Profiles	1.0	1.78257
VMRCLCD	CCLE Cell Line Gene CNV Profiles	-1.0	-1.51354
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.00171
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.905023
OPM-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0647
TP73	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.2211
EGR4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	89.9066
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	158.032
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.14434
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8282
496100435_TCx_probable Alzheimer's disease_TBI_88_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.71539
Nuclear membrane protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.119
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.889738
ECC12	CCLE Cell Line Gene CNV Profiles	-1.0	-2.05819
Nuclear lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
PMC6604319-13072_2019_278_MOESM3_ESM.xlsx-CEM_ect_TET2_DEGs_DMRs_hDMRs-Unnamed_9_TET2	Rummagene Transcription Factor Associations 2026	1.0	null
SK-MEL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.37813
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.156
SET2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47126
SKBR3	CCLE Cell Line Gene CNV Profiles	-1.0	-1.65369
COLO 699	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
MKN-7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.922577
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30674
Skin fibroblast cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.732
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	1.3436
Lipopolysaccharide receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.845
RARA::RXRG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.2992
TK	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.54068
Intracellular organelle lumen	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
SNAI2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1025
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.828822
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.69525
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.0034
496100301_TCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.25773
Intracellular membrane-bounded organelle	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
NCI-H2198	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.14664
RMG-I	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.72314
KYSE-510	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.50322
Tumor Cell Invasion	DisGeNET Gene-Phenotype Associations	1.0	null
PL45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.983025
KNS-62	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.46108
TOV21G	CCLE Cell Line Gene CNV Profiles	1.0	2.3175
NR2F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9564
MDA-MB-175-VII	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.54844
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-2.68669