association	dataset	threshold value	standardized value
H3K9me3_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
ETS1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
FOXP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.0128
BV173	CCLE Cell Line Gene Expression Profiles	1.0	1.43557
JEKO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05618
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
JIMT1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.90399
EVSA-T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09189
Daphnid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.692
ISTMEL1	DepMap CRISPR Gene Dependency	1.0	5.24213
Coronavirus infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.097
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.130432
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.20103
ventrolateral prefrontal cortex_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25654
STAT1::STAT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.7903
H3K27me3_Stomach Smooth Muscle	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
H3K4me3_CH12.LX_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-T2-A6WZ-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-SYMBOL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
MAFF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.4419
HUH7	CCLE Cell Line Gene CNV Profiles	1.0	1.65398
JUN	ENCODE Transcription Factor Targets	1.0	null
APRT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.59319
gonad	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
BICR31	DepMap CRISPR Gene Dependency	1.0	2.48685
POU4F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4808
Brain Lower Grade Glioma_LGG_TCGA-P5-A5EX-01A-12R-A28M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE70883,GSE71179_0_v_1_pbx1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
19855078-TableS3b	GeneSigDB Published Gene Signatures	1.0	null
TEAD1	JASPAR Predicted Transcription Factor Targets	1.0	null
Shelterin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.362
SCABER	CCLE Cell Line Gene CNV Profiles	-1.0	-1.80896
OCI-M1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.22666
496100419_TCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.32418
FOXC1	JASPAR Predicted Transcription Factor Targets	1.0	null
NUGC3	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46741
amygdaloid complex_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.895363
H3K9ac_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
SMC3_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.949209
Lung adenocarcinoma_LUAD_TCGA-62-A46O-01A-11R-A24H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.05
rDNA heterochromatin	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.757
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.87088
POLR2A_testis_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-4223-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
positive regulation of cytoplasmic translation	GO Biological Process Annotations 2025	1.0	null
ONCODG1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.64478
mediodorsal nucleus of thalamus_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36001
NCIH1930	CCLE Cell Line Gene Expression Profiles	-1.0	-2.01307
Myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.799
Inclusion body myositis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.127
TEF-1	MotifMap Predicted Transcription Factor Targets	1.0	null
HCC1143	CCLE Cell Line Gene CNV Profiles	1.0	2.20946
Dlx4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.8194
LU-135	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NFYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.0413
Specific developmental disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.063
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040049
Autosomal dominant Emery-Dreifuss muscular dystrophy 5	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
LC1SQSF	CCLE Cell Line Gene Expression Profiles	1.0	1.60551
GBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.3417
FOXP2-21765815-NEURO2A-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
Muscle tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.794
Medulloblastoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.589
Cyclin D3-CDK4 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.675
nucleus	LOCATE Predicted Protein Localization Annotations	1.0	null
EJM	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934549
SUM149PT	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.807326
U2OS	CCLE Cell Line Gene CNV Profiles	1.0	1.73356
HCC78	DepMap CRISPR Gene Dependency	1.0	2.17252
Muscular atrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.405
CEBPB	ENCODE Transcription Factor Targets	1.0	null
hsa-miR-4666-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
AU565	DepMap CRISPR Gene Dependency	1.0	6.69835
Facioscapulohumeral muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
CA-46 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.834
POLR2A	ENCODE Transcription Factor Targets	1.0	null
single-stranded DNA-binding protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.081
496100463_FWM_possible Alzheimer's disease_no TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	16.6152
HSF1-23293686-STHDH_STRIATAL-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
HINFP	JASPAR Predicted Transcription Factor Targets	1.0	null
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
ZNF384	ENCODE Transcription Factor Targets	1.0	null
HCC2911	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.928896
SW1990	DepMap CRISPR Gene Dependency	1.0	3.13879
KYSE-140	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934549
PANC0813	DepMap CRISPR Gene Dependency	1.0	2.04669
SIHA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94864
anterior (rostral) cingulate (medial prefrontal) cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.95564
NANOG-18347094-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
Msx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.9328
A-Netherlands-602-2009(H1N1)_7Hour_None_GSE40844	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.56679
LRRN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.04695
ZNF384_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
THP1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-2.06025
Lung squamous cell carcinoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.731
SGS cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.991
Bladder Urothelial Carcinoma_BLCA_TCGA-CF-A3MG-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TBP	ENCODE Transcription Factor Targets	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7424-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Arx	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.32
VSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.4314
PMC8387919-mmc2.xlsx-ST2_NEUROG3_binding_sites-Unnamed_13_NEUROG3	Rummagene Transcription Factor Associations 2026	1.0	null
KARPAS-1106P	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	3.19301
GSE160246_0_v_7_cpeb4_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ChIP_TCF3_18347094	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
UNCX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3561
NCI-H1435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05618
SAP30_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Six4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.0077
CHAGOK1	CCLE Cell Line Gene Expression Profiles	1.0	1.54431
GSE211286_4_v_3_tcf12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-VS-A8QA-01A-11R-A37O-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
regulation of cytoplasmic translation	GO Biological Process Annotations 2023	1.0	null
GSE88819_1_v_8_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.13563
H3K27me3_SK-N-SH_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.89575
Brain Lower Grade Glioma_LGG_TCGA-DU-6406-01A-11R-1708-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
frontalcortex	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.959691
KDM5A_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
496100421_PCx_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.73266
mediodorsal nucleus of thalamus_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.7825
NCI-H292 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
NCI-H2073	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1607
primary motor cortex (area M1, area 4)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.985121
SK-MEL-31	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17333
Bladder Urothelial Carcinoma_BLCA_TCGA-KQ-A41P-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-1238	TargetScan Predicted Conserved microRNA Targets	1.0	0.568687
H3K27me3_megakaryocyte_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SMAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8686
NCI-H1623	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-N417	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.43233
SEM	DepMap CRISPR Gene Dependency	1.0	2.19124
COV362	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1119
Brain Lower Grade Glioma_LGG_TCGA-FG-A6J3-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7282
JHOS4	CCLE Cell Line Gene CNV Profiles	1.0	2.36415
PRDM14	ChEA Transcription Factor Targets	1.0	null
H3K27ac_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
RBM28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.13269
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.047
H3K27me3_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
icSARS CoV_24Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.00266
SKBR3	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.41578
HS936T	DepMap CRISPR Gene Dependency	1.0	2.64406
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
H3K4me3_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
E2F1-21310950-MCF-7-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-5359-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Fragile X syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.224
NCIH1385	CCLE Cell Line Gene Expression Profiles	-1.0	-1.53204
cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.166544
Kidney Chromophobe_KICH_TCGA-KO-8404-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Cataract	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.49
Prostate adenocarcinoma_PRAD_TCGA-HC-8259-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
F5	CCLE Cell Line Gene Expression Profiles	1.0	2.13984
testis	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.995303
MLXIPL	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7762
STAT1_01_154	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	1.28391
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.067
FOXB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.9512
HARA	CCLE Cell Line Gene CNV Profiles	1.0	1.45166
FOXP2	ChEA Transcription Factor Targets	1.0	null
PrefrontalCortex	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.05657
NCI-H1417	COSMIC Cell Line Gene Mutation Profiles	1.0	null
LOVO	Achilles Cell Line Gene Essentiality Profiles	1.0	1.0917
posterior (caudal) superior temporal cortex (area 22c)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.956499
UACC893	DepMap CRISPR Gene Dependency	1.0	3.72489
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Allan-Herndon-Dudley syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.178
striatum_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.925735
Lymphoma_burkitts(Raji)	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.71762
MDAMB231	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.57051
PMC10591418-12711_2023_849_MOESM11_ESM.xls-AA_5W_vs_LS_5W-gene_name_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
MDAMB134VI	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.920162
Primary effusion lymphoma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
EWS502	CCLE Cell Line Gene Expression Profiles	1.0	1.51666
RERFLCAD2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.92209
HCC1395	CCLE Cell Line Gene CNV Profiles	-1.0	-1.6108
HCC1395	CCLE Cell Line Gene Expression Profiles	-1.0	-1.52424
Acute Myeloid Leukemia_LAML_TCGA-AB-2857-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Telomerase holoenzyme complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.936
Nfat5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	40.6011
RPMI8402	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37465
H3K9ac_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.4144
E2F1	ChEA Transcription Factor Targets	1.0	null
YY1	MotifMap Predicted Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-FG-A60L-01A-12R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAL851	CCLE Cell Line Gene CNV Profiles	1.0	1.54076
PANC 02.03	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24239
CAL-85-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.09946
Extraembryonic tissue	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.219
CD34+	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.955195
U5 snRNP	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.796
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050513
RS4-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4335-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-DU-8165-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
H3K27ac_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
NCI-H596	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986181
X-linked Emery-Dreifuss muscular dystrophy 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.226
NCIH1930	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59447
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
Primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.984
ventrolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.16132
blastocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.879512
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5885-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Hmx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	25.4324
pyrazinamide_mus musculus_gpl6246_gse48027	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
OCIMY7	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59975
NCI-H1930	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.05864
cation binding	GO Molecular Function Annotations 2015	1.0	null
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
Mesothelioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.65
143B	CCLE Cell Line Gene CNV Profiles	1.0	1.85007
anterior (rostral) cingulate (medial prefrontal) cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.66928
Telomere cap complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.329
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.0451
PLC-PRF-5 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.631
MAFK	ENCODE Transcription Factor Targets	1.0	null
ChIP_POU5F1_18347094	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
hsa-miR-369-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
C32TG	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.23727
Prostate adenocarcinoma_PRAD_TCGA-HC-7745-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959997
Stat2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	128.422
SJRH30	COSMIC Cell Line Gene Mutation Profiles	1.0	null
CORL279	DepMap CRISPR Gene Dependency	1.0	4.25011
X-linked recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.259
GBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4198
Myotonic dystrophy type 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.57
Cell surface furrow	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.737
Mesothelioma_MESO_TCGA-SC-A6LM-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.96481
Prostate adenocarcinoma_PRAD_TCGA-HI-7168-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ETS1	ENCODE Transcription Factor Targets	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.922168
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.948
MM1S	CCLE Cell Line Gene Expression Profiles	1.0	1.58731
EP300_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MS751	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.10225
no abnormal phenotype detected	MGI Mouse Phenotype Associations 2023	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2881-03A-01T-0735-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PANC0327	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.05799
PFSK1	DepMap CRISPR Gene Dependency	1.0	2.70381
LCLC103H	CCLE Cell Line Gene CNV Profiles	-1.0	-1.86482
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.352
CHD1_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
WDR75	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22282
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A4XL-01A-11R-A27Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MORCPR	DepMap CRISPR Gene Dependency	1.0	2.11764
TC32	DepMap CRISPR Gene Dependency	1.0	2.8506
TET1-21490601-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
mRNA binding	GO Molecular Function Annotations 2023	1.0	null
UOK101	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.12615
LOVO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
SOX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2186
MEL285	DepMap CRISPR Gene Dependency	1.0	2.44114
Becker muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
KHDRBS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41066
primary motor cortex (area M1, area 4)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.28294
malignant glioma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.547032
hsa-miR-509-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
PMC8423434-mmc7.xlsx-SOX2_Primed-Genes_n_3042_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
Lens disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.488
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.856002
hsa-miR-335-5p	MiRTarBase microRNA Targets	1.0	null
Kinesin I complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.592
CD33+_Myeloid	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.89921
SAP30	ENCODE Transcription Factor Targets	1.0	null
KDM5A	ENCODE Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-A74H-01A-11R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hippocampus (hippocampal formation)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.32339
OVCA 429	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.995296
Setleis syndrome_Skin fibroblast_GSE16524	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-0.768882
MEIS1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1724
ATXN1	Pathway Commons Protein-Protein Interactions	1.0	null
Heterotrimeric G-protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.933
NUDUL1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.61003
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.120213
RCM-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46171
NCIH727	CCLE Cell Line Gene CNV Profiles	-1.0	-2.3514
H3K27me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
ESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.393
Gonad	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
mRNA_POU5F1_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
hsa-miR-3124-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
BFTC905	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69521
SUDHL6	CCLE Cell Line Gene Expression Profiles	-1.0	-1.73929
BICR10	DepMap CRISPR Gene Dependency	1.0	3.2474
ISX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6678
Prostate adenocarcinoma_PRAD_TCGA-VP-A872-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
VMRCLCP	CCLE Cell Line Gene CNV Profiles	1.0	2.00297
RMUG-S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05618
EFM19	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.12267
Nr2f6	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	61.9423
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
A2058	Achilles Cell Line Gene Essentiality Profiles	1.0	1.22751
XY body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.731
Skin Cutaneous Melanoma_SKCM_TCGA-FW-A5DY-06A-11R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EFO21	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.09407
RNA binding	GO Molecular Function Annotations 2023	1.0	null
Developmental disorder of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.049
jf1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.3
EMX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.2416
icSARS CoV_30Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.75954
Mesothelioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.745
Liver hepatocellular carcinoma_LIHC_TCGA-G3-A25Y-01A-11R-A16W-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NOMO1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.74349
CCRF-CEM	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-A4-7915-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_CH12.LX_mm9_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE144919,GSE145177_1_v_0_dazl_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4882-01A-02R-1426-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LN229	Achilles Cell Line Gene Essentiality Profiles	1.0	1.08071
Uterine Carcinosarcoma_UCS_TCGA-N5-A4RD-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXC11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2416
MCF7	Achilles Cell Line Gene Essentiality Profiles	1.0	2.76247
SF767	CCLE Cell Line Gene Expression Profiles	1.0	2.23742
bladder	GTEx Tissue Gene Expression Profiles	-1.0	-1.00759
H3K27me3_erythroblast_mm9_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXB9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6582
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839356
Muscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.73
RAX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.4245
positive regulation of translation	GO Biological Process Annotations 2025	1.0	null
GC-1 spg cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.296
amygdaloid complex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.902733
Nuclear telomere cap complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.331
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.03311
BB30HNC	DepMap CRISPR Gene Dependency	1.0	2.66728
PROP1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3223
LBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6569
EN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7457
dorsolateral prefrontal cortex_26 pcw_F_12949	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.35366
Oligospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.162
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A852-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Mitochondrial respiratory chain complex IV	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.512
CAL120	Achilles Cell Line Gene Essentiality Profiles	1.0	1.20261
H3K4me2_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Nanog	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.5135
H3K4me3_testis_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-IR-A3LF-01A-21R-A22U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUM 52PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06668
GTPase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.913
EFM-192A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.46061
Male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.992923
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.49671
primary auditory cortex (core)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.69963
UMRC6	CCLE Cell Line Gene Expression Profiles	1.0	1.55085
TET1-21490601-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.42166
Cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.927
RQC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.917
Alx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.6394
dorsolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.45804
POLR2A_HGPS cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
ATXN1	Hub Proteins Protein-Protein Interactions	1.0	null
SW 1463	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17333
MAZ_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.52827
organic cyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N9-A4Q4-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DHRS3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63573
HL60	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.20031
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-4224-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.121
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-4228-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
mediodorsal nucleus of thalamus_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.12112
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.458
Progeroid syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.022
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.5862
DLX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3148
NCIH650	CCLE Cell Line Gene CNV Profiles	1.0	1.65486
HSF1	ChEA Transcription Factor Targets	1.0	null
JHESOAD1	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.4317
ATOH7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.4497
NFATC3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1533
male reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.011
GSE88819_1_v_4_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ELK1	JASPAR Predicted Transcription Factor Targets	1.0	null
JVM2	CCLE Cell Line Gene Expression Profiles	1.0	1.71083
transition metal ion binding	GO Molecular Function Annotations 2015	1.0	null
breast	GTEx Tissue Gene Expression Profiles	1.0	1.53155
H3K27me3_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Carcinogenesis	DisGeNET Gene-Phenotype Associations	1.0	null
Ovary	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	1.22629
salivary gland	GTEx Tissue Gene Expression Profiles	-1.0	-1.00759
icSARS CoV_0Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	2.08171
X-linked dyskeratosis congenita	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.166
CHD1	ENCODE Transcription Factor Targets	1.0	null
Tibial muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.518
PORCN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.02534
HCC2279	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.36177
MCF7	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.599048
SU-DHL-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.47154
GSE149264,GSE149267_4_v_5_trp53_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
DLX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.2906
POU5F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7757
CTCF_kidney_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Methyl coenzyme M reductase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.985
DMRT1-23473982-TESTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
SUDHL1	CCLE Cell Line Gene CNV Profiles	-1.0	-2.09288
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.94864
VSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0673
PMC10123531-NIHMS1874945-supplement-Table_S6.xlsx-SOX2_BCAT_cobound_peaks-Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7593-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ribonuclease MRP complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.765
D423MG	DepMap CRISPR Gene Dependency	1.0	6.01265
MDAMB436	DepMap CRISPR Gene Dependency	1.0	2.91724
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-G8-6324-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SK-MES-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.817
ventrolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.86077
GSE149264,GSE149267_4_v_3_trp53_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
SLR24	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.26678
NANOG	ChEA Transcription Factor Targets	1.0	null
MSX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1501
SMAD5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3069
primary motor cortex (area M1, area 4)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.04272
GSE94768_0_v_4_pofut1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
ZNF354A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.7327
EW-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K4me1_ES-E14_mm9_2	ENCODE Histone Modification Site Profiles	1.0	null
FOXO6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.9582
928 MEL	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825961
primary auditory cortex (core)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.046
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
RPMI7951	CCLE Cell Line Gene CNV Profiles	1.0	1.44286
intracellular organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
TE-12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FADU	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986181
RERFGC1B	CCLE Cell Line Gene Expression Profiles	-1.0	-3.0468
LCLC-97TM1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.832147
LUDLU1	CCLE Cell Line Gene CNV Profiles	1.0	1.36888
icSARS CoV_30Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.806231
orbital frontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.53361
Immune system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
RKO	CCLE Cell Line Gene Expression Profiles	1.0	1.74299
ChIP_NANOG_18347094	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4352-01A-01R-1289-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BIN67	DepMap CRISPR Gene Dependency	1.0	3.09294
LMX1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6539
Olfactory organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.781
RBBP5	ENCODE Transcription Factor Targets	1.0	null
GSE88819_0_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Lung adenocarcinoma_LUAD_TCGA-75-6214-01A-41R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3478
SUM52PE	DepMap CRISPR Gene Dependency	1.0	2.18874
HCC1428	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.1119
mRNA_OTX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
SW1990	COSMIC Cell Line Gene Mutation Profiles	1.0	null
H3K9me3_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
ROS50	DepMap CRISPR Gene Dependency	1.0	6.40182
E2F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8489
BtuCD complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.956
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.7656
protein binding	GO Molecular Function Annotations 2015	1.0	null
Lymphoid tissue	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
SKMES1	CCLE Cell Line Gene CNV Profiles	1.0	2.76555
OLIG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7311
721_B_lymphoblasts	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-0.871181
pg4	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.375
uterus	GTEx Tissue Gene Expression Profiles	-1.0	-1.00759
HESX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1731
PANC0504	CCLE Cell Line Gene Expression Profiles	-1.0	-2.29614
POSTN_01_293	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59377
orbital frontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30547
positive regulation of translation	GO Biological Process Annotations 2023	1.0	null
cervix uteri	GTEx Tissue Gene Expression Profiles	1.0	0.969384
Nr5a1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.9972
mRNA_GATA3_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
Liver Diseases	CTD Gene-Disease Associations	1.0	1.11255
MACROH2A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.47862
Myotonic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.477
Nr1h3::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6809
PMC8423434-mmc7.xlsx-OCT4_Primed-Genes_n_912_POU5F1	Rummagene Transcription Factor Associations 2026	1.0	null
PANC0403	CCLE Cell Line Gene CNV Profiles	-1.0	-1.46213
skeletalmuscle	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.911918
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.027
Cytoplasmic side of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.922
MPP89	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69866
TBP_MEL cell line_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
anterior (rostral) cingulate (medial prefrontal) cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.44815
BHLHE40_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
primary motor cortex (area M1, area 4)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.43344
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.087
pancreas	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.46784
MXI1	ENCODE Transcription Factor Targets	1.0	null
PK-8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.61563
NCIH716	CCLE Cell Line Gene CNV Profiles	-1.0	-2.20312
Sarcoma_SARC_TCGA-DX-A8BZ-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3899
CTCF_heart_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-K4-A54R-11A-11R-A26T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lhx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	44.65
Kidney renal papillary cell carcinoma_KIRP_TCGA-DW-5560-01A-01R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SBC5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52141
PMC9950457-mmc3.xlsx-AP2A_binding_sites_GRHL2_KO-LRRC32_GRHL2	Rummagene Transcription Factor Associations 2026	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-H6-A45N-11A-12R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Distal myopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
H3K27me3_K562_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE191105_2_v_3_nat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
KM12	CCLE Cell Line Gene Expression Profiles	1.0	2.00625
Brain Lower Grade Glioma_LGG_TCGA-HW-8319-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-5431-01A-01R-1514-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GA10	CCLE Cell Line Gene Expression Profiles	1.0	1.78701
NCI-H2030	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.81442
MIXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3449
primary auditory cortex (core)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.996524
Azoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.587
H3K27me3_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Peripheral nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.036
H3K4me1_limb_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
FIGLA	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.63014
HS766T	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.46761
TET1	ChEA Transcription Factor Targets	1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1462
BHLHE40	ENCODE Transcription Factor Targets	1.0	null
HEY	DepMap CRISPR Gene Dependency	1.0	4.05148
Nuclear replisome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.851
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4606
mRNA_SOX2_19796622	ESCAPE Omics Signatures of Genes and Proteins for Stem Cells	1.0	null
mRNA binding	GO Molecular Function Annotations 2025	1.0	null
Treacher Collins syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.36
Pancreatic adenocarcinoma_PAAD_TCGA-FB-A545-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me3_ES-Bruce4_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
HOXD11	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.9878
CBX7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.87273
EB1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.05158
primary somatosensory cortex (area S1, areas 3,1,2)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.73279
H3K27ac_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC10591418-12711_2023_849_MOESM11_ESM.xls-AA_3W_vs_LS_3W-gene_name_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
amygdaloid complex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.986852
BHT101	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48776
RAD21_MEL cell line_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
SREBF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.4187
cerebellum_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.964953
Zinc finger, CCHC-type	InterPro Predicted Protein Domain Annotations	1.0	null
RAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3799
DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8785
DOR 13	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839356
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6301
Lung adenocarcinoma_LUAD_TCGA-38-4630-01A-01R-1206-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA1	JASPAR Predicted Transcription Factor Targets	1.0	null
COLO 800	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.75049
tonsil	HPA Tissue Protein Expression Profiles	1.0	0.895909
orbital frontal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.86326
MDA-MB-415	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6038
SRY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.5
Adult Liver Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
Myoglobinuria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.046
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I3-11A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
TC71	Achilles Cell Line Gene Essentiality Profiles	1.0	1.19328
496100469_TCx_no dementia_TBI_89_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.52371
TCC-PAN2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.16949
Skin Cutaneous Melanoma_SKCM_TCGA-FS-A1YW-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Testis	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Prostate adenocarcinoma_PRAD_TCGA-HC-A6HX-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE166004_3_v_6_pld1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
HCC1428	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-2.12039
Biceps	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.733
PRRX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3668
ESRRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1779
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.169
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.2278
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.264
Malignant Neoplasm	DisGeNET Gene-Disease Associations	1.0	null
BHLHA15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0515
Bladder Urothelial Carcinoma_BLCA_TCGA-GD-A3OS-01A-12R-A220-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EZH2	ENCODE Transcription Factor Targets	1.0	null
MXI1_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
A1207	CCLE Cell Line Gene Expression Profiles	1.0	2.51948
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
EZH2_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HOXC12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4972
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.057666
DG-75	COSMIC Cell Line Gene Mutation Profiles	1.0	null
IGR1	CCLE Cell Line Gene CNV Profiles	1.0	1.51181
KYSE520	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41293
PEA1	DepMap CRISPR Gene Dependency	1.0	2.70298
X-linked dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
MAX_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-D9-A1JX-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LNZ308	CCLE Cell Line Gene Expression Profiles	1.0	1.38573
Choline	CTD Gene-Chemical Interactions	1.0	null
CTCF_MEL cell line_mm9_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Hoxd13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.5705
PHOX2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.615
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A3JI-06A-11R-A21D-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BT474	CCLE Cell Line Gene CNV Profiles	-1.0	-1.48518
FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8641
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HD-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-CJ-4642-01B-01R-1305-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.7948
CTCF_GM10266_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
SW780	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63225
MCC13	DepMap CRISPR Gene Dependency	1.0	3.24874
SUDHL10	CCLE Cell Line Gene Expression Profiles	1.0	1.54334
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
IRF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.561
blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.126792
Autosomal dominant Emery-Dreifuss muscular dystrophy 4	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.082
preoptic	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-2.22351
anterior (rostral) cingulate (medial prefrontal) cortex_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.869211
ZNF384_ES-E14_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6342-01A-11R-1965-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
positive regulation of cytoplasmic translation	GO Biological Process Annotations 2023	1.0	null
metal ion binding	GO Molecular Function Annotations 2015	1.0	null
SCC9	DepMap CRISPR Gene Dependency	1.0	3.37802
Pancreatic adenocarcinoma_PAAD_TCGA-LB-A7SX-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nicotine_myzus persicae_gpl9470_gse18658	GEO Signatures of Differentially Expressed Genes for Small Molecules	-1.0	null
HMEL	CCLE Cell Line Gene Expression Profiles	1.0	1.70106
MAP2K1_knockdown_134_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.61483
Acute Myeloid Leukemia_LAML_TCGA-AB-2867-03A-01T-0734-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_17279_KO_Mlx_SRP303876	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-10.3135
striatum_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.22899
NOL11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	5.9248
NCIH1651	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36058
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
IRF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	60.2104
LS411N	DepMap CRISPR Gene Dependency	1.0	11.8454
X-linked monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.442
SMC3	ENCODE Transcription Factor Targets	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-8105-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC10290283-biol-2022-0622-sm3.pdf-448-BSX_BSX	Rummagene Transcription Factor Associations 2026	1.0	null
hippocampus (hippocampal formation)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.896567
H3K27me3_myotube_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Splenic Diseases	CTD Gene-Disease Associations	1.0	1.11116
CDK2_knockdown_132_GSE31534	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.23348
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	38.7476
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-JW-A69B-01A-11R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.34841
JUND_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Acute Myeloid Leukemia_LAML_TCGA-AB-2810-03A-01T-0736-13	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
RBBP5_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MAX_K562_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
intracellular part	LOCATE Predicted Protein Localization Annotations	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HB-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
BACH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.0436
MDA-MB-436	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18858
MX-1 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
NCIH747	CCLE Cell Line Gene CNV Profiles	1.0	1.64245
E2F1-21310950-MCF7-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
HCC44	CCLE Cell Line Gene CNV Profiles	1.0	1.9385
RARB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.2423
regulation of cytoplasmic translation	GO Biological Process Annotations 2025	1.0	null
TCF3-18347094-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
POU5F1	ChEA Transcription Factor Targets	1.0	null
CTCF_cortical plate_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HCC1162	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.18858
PMC8423434-mmc7.xlsx-SOX2_HENSM-Genes_n_2733_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
cerebellar cortex_10 mos_M_12977	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.854558
vomeralnasalorgan.VMO.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.906549
DMRT1-23473982-TESTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
OVMIU	DepMap CRISPR Gene Dependency	1.0	3.38718
HGC-27 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.866
SKLU1	CCLE Cell Line Gene CNV Profiles	1.0	2.74026
TT	CCLE Cell Line Gene Expression Profiles	1.0	1.87102
Biceps brachii	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.655
496100416_FWM_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.19539
MSL complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.733
ONECUT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.652
NCIH2009	CCLE Cell Line Gene CNV Profiles	-1.0	-1.76517
Prostate adenocarcinoma_PRAD_TCGA-J4-A67Q-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Methionine	CTD Gene-Chemical Interactions	1.0	null
Visceral endoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.678
COLO679	DepMap CRISPR Gene Dependency	1.0	3.18538
PRRX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3593
NCI-H2023	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-BF-A3DJ-01A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
IGR39	Achilles Cell Line Gene Essentiality Profiles	1.0	1.45708
M band	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.599
DMRT1	ChEA Transcription Factor Targets	1.0	null
Spinocerebellar ataxia type 8	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.235
CAOV4	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.16416
SOX9_01_308	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.26903
PDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.9448
Shox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.2752
DMS 273	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.23462
POLR2A_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
PMC12534504-41598_2025_20489_MOESM1_ESM.pdf-390-ZBTB46_ZBTB46	Rummagene Transcription Factor Associations 2026	1.0	null
EJM	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44946
Hoxa13	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	23.8476
hsa-miR-4691-5p	TargetScan Predicted Conserved microRNA Targets	1.0	0.436802
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.017
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
dorsolateral prefrontal cortex_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30747
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
SNU-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962614
FOXO4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.2449
TLX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9594
PRDM14-21183938-MESC-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
HCC2450	DepMap CRISPR Gene Dependency	1.0	4.80086
NFATC4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1515
MDAMB361	CCLE Cell Line Gene CNV Profiles	-1.0	-2.00401
HTK	CCLE Cell Line Gene CNV Profiles	1.0	1.39455
Dystroglycan complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.876
HCC1897	CCLE Cell Line Gene Expression Profiles	1.0	1.50581
hsa-miR-3907	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
NCI-H2009	COSMIC Cell Line Gene CNV Profiles	-1.0	-5.12655
Tonsil	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.379
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
HS746T	DepMap CRISPR Gene Dependency	1.0	2.53304
primary somatosensory cortex (area S1, areas 3,1,2)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.07678
Lung adenocarcinoma_LUAD_TCGA-91-6835-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-28-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
Myotonic dystrophy type 1	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.235
ion binding	GO Molecular Function Annotations 2015	1.0	null
SOX9_01_309	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	1.0	2.26903
HCC95	CCLE Cell Line Gene CNV Profiles	1.0	1.38096
MG-63	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17038
FOXP3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5624
IGROV1	DepMap CRISPR Gene Dependency	1.0	2.41756
mainolfactoryepithelium.MOE.	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-0.991753
em3	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.52
GSE88819_1_v_2_tug1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-6871-01A-11R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MAX	ENCODE Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7211-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_17268_KO_Sox30_SRP139811	PerturbAtlas Signatures of Differentially Expressed Genes for Mouse Gene Perturbations	-1.0	-18.4949
GSE88819_7_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
HOXD10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.4628
posteroventral (inferior) parietal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.97777
H3K4me1_placenta_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MYC_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
18955564-TableS2a	GeneSigDB Published Gene Signatures	1.0	null
MSTO-211H cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.978
Nuclear replication fork	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.829
POU4F3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.3538
hippocampus (hippocampal formation)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.936996
H3K4me1_CH12.LX_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
MLX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.392
ALX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4417
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.595
TE5	CCLE Cell Line Gene CNV Profiles	-1.0	-3.21049
dexamethasone_homo sapiens_gpl4133_gse42619	GEO Signatures of Differentially Expressed Genes for Small Molecules	1.0	null
amygdaloid complex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.34881
H3K9ac_fibroblast of dermis_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.03116
CEBPB_HepG2_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
chromosome, telomeric repeat region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.329
CTCF	ENCODE Transcription Factor Targets	1.0	null
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19P-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.018
KNS60	Achilles Cell Line Gene Essentiality Profiles	1.0	1.31893
internal male genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
LOU-NH91	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06555
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.17
Reflex, Abnormal	CTD Gene-Disease Associations	1.0	1.30421
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-6942-01A-21R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KP-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.34854
Brain Lower Grade Glioma_LGG_TCGA-HT-7471-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCIH1963	CCLE Cell Line Gene CNV Profiles	-1.0	-1.54432
Muscular dystrophy-dystroglycanopathy type B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.088
DNA replication factor A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.001
MAZ	ENCODE Transcription Factor Targets	1.0	null
DU-145	COSMIC Cell Line Gene Mutation Profiles	1.0	null
dorsolateral prefrontal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.996177
LHX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1621
hsa-miR-486-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
COVID-19	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.064
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2778
TCF7L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.6908
HOXC9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2378
H3K27me3_IMR90	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PMC8202205-NIHMS1706275-supplement-Table_S1.xlsx-Def_End_D4_GATA6-dependent-ENSEMBL_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.687
HCC2218	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.966905
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.937
UACC812	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.22618
GSE211286_4_v_6_tcf12_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	112.156
Prostate adenocarcinoma_PRAD_TCGA-EJ-5530-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12287	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.08562
AGS	Achilles Cell Line Gene Essentiality Profiles	1.0	1.19178
OLIG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.9469
Uterine Carcinosarcoma_UCS_TCGA-N5-A59F-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.424
intracellular membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
Neuromuscular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.393
Head and Neck squamous cell carcinoma_HNSC_TCGA-QK-A6VB-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.89007
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4693
H3K27me3_erythroblast_mm9_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
icSARS CoV_24Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.61368
H3K4me2_CD14-positive monocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-437-FOXO4_FOXO4	Rummagene Transcription Factor Associations 2026	1.0	null
PAX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.9697
hippocampus (hippocampal formation)_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.40103
MDA-MB-330	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OV7	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.839356
HNF1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.1426
Hematopoietic system	TISSUES Experimental Tissue Protein Expression Evidence Scores 2025	1.0	1.091
hsa-miR-4271	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
MONOMAC1	DepMap CRISPR Gene Dependency	1.0	2.2284
primary visual cortex (striate cortex, area V1/17)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.858031
H3K9ac_ES-E14_mm9_1	ENCODE Histone Modification Site Profiles	1.0	null
COLO 741	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.883157
HT-55	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962614
Ammonium transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.574
Physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.033
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-LP-A7HU-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CtIP_DEPLETION_GDS2189_122_human_MCF10A mammary epithelial cells (MECs)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
LN340	Achilles Cell Line Gene Essentiality Profiles	1.0	1.58805
GSE213442_1_v_0_kpna2_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
primary visual cortex (striate cortex, area V1/17)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.06587
Pontocerebellar hypoplasia type 1D	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.115
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050437
Congenital muscular dystrophy 1B	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.127
primary motor-sensory cortex (samples)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.61393
membrane-bounded organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
MYC	ENCODE Transcription Factor Targets	1.0	null
CORL88	CCLE Cell Line Gene Expression Profiles	-1.0	-1.48275
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.007
cSARS Bat SRBD_60Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.37968
DETROIT 562	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934549
BHLHE23	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.1389
Mesothelioma_MESO_TCGA-TS-A7P8-01A-11R-A34F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Muscle stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.039
spinalcordlower	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	-1.0	-1.1269
Irf1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	42.6694
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.236332
JUND	ENCODE Transcription Factor Targets	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_25 pcw_F_12948	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.94582
GATA3	JASPAR Predicted Transcription Factor Targets	1.0	null
PRDM14-21183938-MESCS-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
Duchenne muscular dystrophy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.273
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.1964
dorsolateral prefrontal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1556
PMC12356745-12015_2025_10896_MOESM2_ESM.pdf-886-ENSG00000184481_FOXO4	Rummagene Transcription Factor Associations 2026	1.0	null
SNUC1	CCLE Cell Line Gene CNV Profiles	1.0	1.47029
Extrinsic component of cytoplasmic side of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.932
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.6125
SNU503	DepMap CRISPR Gene Dependency	1.0	2.37061
striatum_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15784
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039179
FOXL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9748
BT549	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.04375
MITF_01_25	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.59986
primary somatosensory cortex (area S1, areas 3,1,2)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.955161
EP300	ENCODE Transcription Factor Targets	1.0	null
Mecom	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.963
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.154
496100420_PCx_probable Alzheimer's disease_no TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.88339
zinc ion binding	GO Molecular Function Annotations 2015	1.0	null
FOXC1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.198
Frontotemporal dementia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.147
CPCN	CCLE Cell Line Gene CNV Profiles	1.0	1.77758
Hepatic Cirrhosis_Liver_GSE6764	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	1.44014
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
JUN_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K27me3_CD14-positive monocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SP-A6QG-01A-12R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC12019518-ao5c02459_si_002.xlsx-Table_S3-Table_S3_Screening_of_genes_that_are_commonly_upregulated_in_cells_on_stiff_substrate_and_down-regulated_by_KD_of_UBE2A_B_AR	Rummagene Transcription Factor Associations 2026	1.0	null
primary visual cortex (striate cortex, area V1/17)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17044
Folic Acid	CTD Gene-Chemical Interactions	1.0	null
SEPTIN7	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22873
Motor neuron disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.229
Anxiety Disorders	CTD Gene-Disease Associations	1.0	1.18193
SMC3_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
MOLM13	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.63942
hsa-miR-3151	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.538
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-5001-01A-01R-1334-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE191105_2_v_4_nat1_mouse	RummaGEO Gene Perturbation Signatures	-1.0	null
Dinoflagellate cingulum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.753
TP63	JASPAR Predicted Transcription Factor Targets	1.0	null
Neuropathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
hippocampus (hippocampal formation)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25906
HS939-T	COSMIC Cell Line Gene Mutation Profiles	1.0	null
USF2	JASPAR Predicted Transcription Factor Targets	1.0	null
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.050513
NCIH2342	CCLE Cell Line Gene CNV Profiles	-1.0	-1.3498
FOXP2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.3825
icSARS CoV_7Hour_23365422_GSE33267	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.474
CST complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.54
HCC1359	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88405
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.47153
fallopian tube	GTEx Tissue Gene Expression Profiles	-1.0	-1.00759
CTCF_MEL cell line_mm9_6	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7591-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CGTHW1	CCLE Cell Line Gene CNV Profiles	1.0	2.09602
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.59473
CORL311	DepMap CRISPR Gene Dependency	1.0	3.89303
primary somatosensory cortex (area S1, areas 3,1,2)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.860503
Macronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.669
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.2634
Lung adenocarcinoma_LUAD_TCGA-86-7954-01A-11R-2187-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
aa94	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.765
Sensory dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.636
TCF3	ChEA Transcription Factor Targets	1.0	null
lymph node	HPA Tissue Protein Expression Profiles	1.0	1.73261
Dlx3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	22.3953
HCC827	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.868872
FOXD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.7674
Autosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.076
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
AM38	DepMap CRISPR Gene Dependency	1.0	2.14096
PMC4219345-1471-2121-14-52-S4.xlsx-BORIS_6dN-Gene_Symbol_CTCFL	Rummagene Transcription Factor Associations 2026	1.0	null
HCC1143	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.962614
NCIH2052	DepMap CRISPR Gene Dependency	1.0	5.33526
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.798
Liver And Intrahepatic Biliary Tract Carcinoma	DisGeNET Gene-Disease Associations	1.0	null
striatum_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.914589
CardiacMyocytes	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-2.11555
PHOX2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.3543
COLO-783	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.825961
CHLA90	DepMap CRISPR Gene Dependency	1.0	2.76152
Cytoplasmic stress granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.342
RAD21_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Liver hepatocellular carcinoma_LIHC_TCGA-DD-A39Z-01A-11R-A213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
G121	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17333
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GL-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
dm15	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.674
posteroventral (inferior) parietal cortex_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.72013
chromosome, telomeric region	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.231
testis	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	2.09859
EFM-192B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.60498
primary auditory cortex (core)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.29376
DIFI	DepMap CRISPR Gene Dependency	1.0	2.12019
binding	GO Molecular Function Annotations 2015	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A6TY-01A-12R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Lateral loop	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.999
Amyotrophic lateral sclerosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
496100472_PCx_possible Alzheimer's disease_TBI_100+_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.65583
NCIH1355	CCLE Cell Line Gene CNV Profiles	-1.0	-1.34841
SW 403	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.70046
inferolateral temporal cortex (area TEv, area 20)_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.41229
primary auditory cortex (core)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.22393
A673	DepMap CRISPR Gene Dependency	1.0	4.97807
ZNF652	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0976
KLE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.959997
primary motor cortex (area M1, area 4)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.09646
single-stranded RNA binding	GO Molecular Function Annotations 2023	1.0	null
EVSAT	CCLE Cell Line Gene CNV Profiles	1.0	1.34748
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
MAFK_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LY2	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.986442
Brain Lower Grade Glioma_LGG_TCGA-TQ-A7RN-01A-11R-A33Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
In situ melanoma of skin_Epidermis_GSE4587	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.45668
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.4294
QGP1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.47512
LK2	CCLE Cell Line Gene Expression Profiles	1.0	1.53228
hsa-miR-545	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
NCI cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.606
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
LHX6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0188
Liver	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.12197
Erg	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	45.4744
primary motor cortex (area M1, area 4)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01214
Heart	BioGPS Human Cell Type and Tissue Gene Expression Profiles	-1.0	-1.17938
HUTU80	CCLE Cell Line Gene Expression Profiles	-1.0	-1.45233
HCC89	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.17516
dystrophin-associated glycoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.129
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Glycogen storage disease V	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.138
TBP_CH12.LX_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
D341MED	CCLE Cell Line Gene Expression Profiles	1.0	1.52319
Lymphoid Neoplasm Diffuse Large B-cell Lymphoma_DLBC_TCGA-GR-7351-01A-11R-2213-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNUC1	CCLE Cell Line Gene Expression Profiles	1.0	1.54766
OVCA420	DepMap CRISPR Gene Dependency	1.0	3.2001
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
thyroid	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.03144
PMC8987207-DataSheet_1.xls-TF_targets_Fig_2A-E2A_Pre-Pro-B-Cells_ChIP-seq_TCF3	Rummagene Transcription Factor Associations 2026	1.0	null
TC32	CCLE Cell Line Gene Expression Profiles	1.0	3.40795
icSARS CoV_36Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.23113
Bladder Urothelial Carcinoma_BLCA_TCGA-GU-A764-01A-11R-A352-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Intellectual disability	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.233
WM115	CCLE Cell Line Gene Expression Profiles	-1.0	-2.17079
PAX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.8186
PBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0251
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1096
KARPAS299	CCLE Cell Line Gene Expression Profiles	-1.0	-2.6015
TE9	Achilles Cell Line Gene Essentiality Profiles	1.0	1.86677
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.5446
primary somatosensory cortex (area S1, areas 3,1,2)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.58932
hippocampus (hippocampal formation)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.851521
eif4e-cup complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.321
PMC8387919-mmc2.xlsx-ST2_NEUROG3_binding_sites-Unnamed_12_NEUROG3	Rummagene Transcription Factor Associations 2026	1.0	null
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.039783
Liver hepatocellular carcinoma_LIHC_TCGA-CC-5263-01A-01R-A131-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COLO 794	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.854445
POU5F1-18347094-MESC-mouse	ChEA Transcription Factor Binding Site Profiles	1.0	null
PANC 05.04	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.883322
H2AFZ_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
RAD21	ENCODE Transcription Factor Targets	1.0	null
nucleic acid binding	GO Molecular Function Annotations 2015	1.0	null
Male reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
primary motor cortex (area M1, area 4)_13 pcw_M_12820	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.831445
HOXD12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.3946
NCI-H1651	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.934549
A3KAW	DepMap CRISPR Gene Dependency	1.0	4.96106
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
Sarcoma_SARC_TCGA-IF-A4AJ-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Dmbx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.8908
spleen	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	1.23083
K029AX	CCLE Cell Line Gene Expression Profiles	-1.0	-1.61246
TestisIntersitial	BioGPS Human Cell Type and Tissue Gene Expression Profiles	1.0	2.2603
single-stranded RNA binding	GO Molecular Function Annotations 2025	1.0	null
KP2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9791
ARGFX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4064
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.056344
POLR2A_A549_hg19_5	ENCODE Transcription Factor Binding Site Profiles	1.0	null
cell part	LOCATE Predicted Protein Localization Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7100-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HOXC10	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.8498
Rarb	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	78.4101
COGAR359	DepMap CRISPR Gene Dependency	1.0	2.61845
ESR1	JASPAR Predicted Transcription Factor Targets	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8260-11A-01R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CAS1	Achilles Cell Line Gene Essentiality Profiles	1.0	1.18922
MOLM-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.24239
SW 780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.88405
hsa-miR-4725-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
SQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.53115
ZNF35	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.8425
heterocyclic compound binding	GO Molecular Function Annotations 2015	1.0	null
primary motor cortex (area M1, area 4)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04877
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.882331
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.276
SW579	CCLE Cell Line Gene CNV Profiles	1.0	1.58481
DUXA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8088
SHOX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.4502
blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.647721
organelle	LOCATE Predicted Protein Localization Annotations	1.0	null
SNU308	CCLE Cell Line Gene CNV Profiles	1.0	1.37543
primary somatosensory cortex (area S1, areas 3,1,2)_24 pcw_M_12288	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.4696
H3K27me3_erythroblast_mm9_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
EMX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.1855
FOXD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.7531
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
COLO 201	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.986181
CAOV3	CCLE Cell Line Gene Expression Profiles	-1.0	-2.94281
GSE88819_6_v_10_tug1_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-7086-01A-11R-2081-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-8265-01A-11R-2263-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NZM42	DepMap CRISPR Gene Dependency	1.0	2.05509
Foxj3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	31.3889
OLIG3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.9641
Pax7	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	46.8771
GP2D	Achilles Cell Line Gene Essentiality Profiles	-1.0	-1.18257
RERFLCSQ1	CCLE Cell Line Gene CNV Profiles	1.0	1.82872
Prostate adenocarcinoma_PRAD_TCGA-HC-7078-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.4326
BT20	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40932
PK-59	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.05618
OCUBM	DepMap CRISPR Gene Dependency	1.0	6.18479
GSE100528_1_v_0_mettl3_mouse	RummaGEO Gene Perturbation Signatures	1.0	null
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9908
Prostate adenocarcinoma_PRAD_TCGA-EJ-7788-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.3126
496100426_PCx_no dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.26754
placenta	BioGPS Mouse Cell Type and Tissue Gene Expression Profiles	1.0	0.887408
SCC-15	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.98702
Autosomal dominant distal hereditary motor neuronopathy 7	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.323