association	dataset	threshold value	standardized value
HNRNPL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.07955
TM2D2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.45183
TSSK3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10011
CRCGN016_MCF10A.TP53.M_24H:D18	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.22992
CRCGN016_MCF10A.TP53.M_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.19128
TOMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.00652
WHRN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.13009
CRCGN016_MCF10A.WT.HP_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.83834
ELL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01793
ATF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.89768
DHX35	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.23712
CRCGN008_HEPG2_24H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.862
GNL3L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.10586
GAS2L3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32995
CRCGN012_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.48455
NCBP2AS2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.12682
CRCGN014_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	7.777
AP3D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.55569
CRCGN012_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.70273
ARFGEF2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.84571
CRCGN009_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.53327
GSC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01402
RPL13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.95518
FCSK	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-3.15517
AMIGO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.42689
CRCGN017_MCF10A.WT.HP_24H:P03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2154
GBX1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25193
CRCGN013_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.9748
MAST2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04326
CRCGN015_MCF10A.TP53.M_24H:C23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.8372
CRCGN014_HEPG2_24H:K02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	8.11544
ENY2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.65098
ZNF843	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.0161
CRCGN010_HEPG2_24H:K13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.7992
SLC33A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.37764
CRCGN016_MCF10A.TP53.M_24H:G13	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.50432
STEEP1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.069
BMP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.28873
CRCGN016_MCF10A.TP53.M_24H:H09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.52816
DPPA3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.16066
MYADM	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.03813
EIF3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51876
CRCGN016_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.75545
CRCGN014_HEPG2_3H:E08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.21019
CRCGN010_HEPG2_24H:N04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.37645
HYOU1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.20106
AMOTL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.55773
ZNF383	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.04977
CRCGN016_MCF10A.TP53.M_24H:O20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.69948
CRCGN010_HEPG2_24H:L03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.1681
SFT2D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.83546
AZIN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.34868
SPEGNB	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10059
STC1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.46208
CRCGN013_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.96652
HAUS8	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.26451
BUB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.27425
KLHL42	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.01143
SLC35B2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02234
SERPINB6	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.61342
KDM3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65898
CRCGN016_MCF10A.TP53.M_24H:E20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.26965
MMP23B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.70259
PRELID3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.57498
EGR2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.43605
ATP13A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.24214
GINS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68167
CYP26A1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.88269
LTF	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.06983
RUNDC3A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50954
CRCGN008_HEPG2_24H:O02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.6891
NDUFA13	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09454
METTL14	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.08071
SCARB2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.15406
JMJD1C	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.74023
CRCGN016_MCF10A.WT.HP_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.87812
CRCGN015_MCF10A.TP53.M_24H:K10	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.40065
ARID3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59319
CRCGN011_HEPG2_24H:H15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.50515
PMC8858874-NIHMS1764275-supplement-Supplemental_Table_2.xlsx-R1_SOX2_bound_genes_5000bp_6-9--Gene_Name_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
PRPF4B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.59381
ERBB3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10517
ZFP36L1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.50043
CRCGN016_MCF10A.TP53.M_24H:M01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.3164
CIAO2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.48078
CDAN1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39501
DYNLRB1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.76234
CRCGN017_MCF10A.WT.HP_24H:M07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6
CRCGN014_HEPG2_24H:C03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.15033
CRCGN015_MCF10A.TP53.M_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.59385
CRCGN008_HEPG2_24H:G04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.2487
CRCGN016_MCF10A.TP53.M_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.59206
BHMT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.28613
ALDH3A2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.43055
YTHDF3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.14963
CRCGN014_HEPG2_3H:B08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.0628
ATPAF1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.00432
AP2B1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.39108
DTL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.09257
CRCGN010_HEPG2_24H:K01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.0869
ACAA2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.21414
THNSL2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.17553
CORO1A	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.01007
TPM3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.33642
CRCGN017_MCF10A.WT.HP_24H:G15	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.2301
TBCCD1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.80398
PIGT	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.25234
CRCGN008_HEPG2_24H:E07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.1961
DNMT3B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.02241
CRCGN016_MCF10A.TP53.M_24H:P12	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.68448
CRCGN017_MCF10A.WT.HP_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	5.0358
PTPRG	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.0031
CRCGN017_MCF10A.TP53.M_24H:K08	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.95696
INCENP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.09303
WDR5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.82588
SKIL	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.04484
TAF11	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22183
NCDN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.36313
CRCGN017_MCF10A.WT.HP_24H:K09	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.6571
POLR2K	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.96443
CRCGN017_MCF10A.WT.HP_24H:C21	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.85935
FOXO1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.75628
CRCGN012_HEPG2_24H:O01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.36693
CRCGN014_HEPG2_24H:G02	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.16235
CRCGN017_MCF10A.WT.HP_24H:N17	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.8961
CNOT6L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.5685
CRCGN014_HEPG2_24H:C01	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.377
RPS28	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.44571
CRCGN015_MCF10A.TP53.M_24H:K07	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	4.4235
CRCGN014_HEPG2_24H:K23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.36171
CRCGN008_HEPG2_24H:E22	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.67175
KDM4D	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.07646
CRCGN016_MCF10A.TP53.M_24H:P20	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	3.26604
PIFO	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.22454
CRCGN016_MCF10A.TP53.M_24H:P23	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.94165
SECISBP2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.10446
CRCGN017_MCF10A.TP53.M_24H:G14	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.97631
CYB5D1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.14909
OTUD4	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.05803
IKBIP	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.54847
FYN	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.18787
ATP5MC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.41604
CRCGN016_MCF10A.TP53.M_24H:O03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.34215
DCAF15	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.47879
GSPT2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.22108
KLHL5	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.65758
MT1X	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.08966
CRCGN014_HEPG2_24H:F03	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	6.90694
CRCGN013_HEPG2_24H:K04	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	-1.0	-2.05474
CRCGN009_HEPG2_24H:O06	Carcinogenome Chemical Perturbation Carcinogenicity Signatures	1.0	2.64687
POU1F1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25198
NCKIPSD	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.25314
TRAPPC3	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27448
ZNF90	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.27217
SUPT6H	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.68747