association	dataset	threshold value	standardized value
MYC	ENCODE Transcription Factor Targets	1.0	null
signal transduction	GO Biological Process Annotations 2015	1.0	null
eggshell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.277197
MYCN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7519
cortical granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.35978
regulation of biological process	GO Biological Process Annotations 2015	1.0	null
GSE140936,GSE140938_0_v_1_slfn11_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Head kidney	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.657
TBX21	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2961
Secretory granule membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.86
PPARG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.75
Pancreatic adenocarcinoma_PAAD_TCGA-IB-7649-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Spermary	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.912
regulation of cellular protein metabolic process	GO Biological Process Annotations 2015	1.0	null
GSE154577_2_v_12_plagl1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
EHF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.4055
TFAP2C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	134.855
BA-96-YB32_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.755487
Adenomyoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.046
NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	86.8532
orbital frontal cortex_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05311
ZNF8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.9312
ED-05-LQ40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.395819
H3K27me3_H7_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE213228_4_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Brain disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.252
OACP4C	COSMIC Cell Line Gene CNV Profiles	1.0	2.12439
positive regulation of lymphocyte proliferation	GO Biological Process Annotations 2025	1.0	null
secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.23557
disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040732
cerebellar cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01753
other	GeneRIF Biological Term Annotations	1.0	null
GSE138938_1_v_3_foxp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
A498	CCLE Cell Line Gene Expression Profiles	-1.0	-1.91996
H4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DU4475	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.26927
NO11	DepMap CRISPR Gene Dependency	1.0	2.85899
Riboflavin synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.639
ZNF692	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.6877
NCI-H1299	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC11358472-41467_2024_51851_MOESM4_ESM.xlsx-Sheet1-Supplementary_Table_4_gene_expression_levels_for_323_genes_connected_to_EWS-WT1_in_JN-DSRCT1_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
T-47D	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892636
Gonadal dysgenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.322
Plagl1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.672
Germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.447
Enterovirus 71_4Hour_None_GSE15323	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.91866
GSE95386_0_v_1_trim24_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sperm head plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.637
COLO-668	COSMIC Cell Line Gene Mutation Profiles	1.0	null
proacrosin	GeneRIF Biological Term Annotations	1.0	null
recognition	GeneRIF Biological Term Annotations	1.0	null
icSARS CoV_24Hour_None_GSE37827	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-1.44126
Obesity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.105
male pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.256197
PACADD188	DepMap CRISPR Gene Dependency	1.0	3.09046
positive regulation of immune response	GO Biological Process Annotations 2015	1.0	null
Attention deficit hyperactivity disorder	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.341
primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.10579
GSE106661,GSE106665_0_v_3_arid1a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
SUM 229PE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7713
17638893-SuppTable2	GeneSigDB Published Gene Signatures	1.0	null
HTC-C3	GDSC Cell Line Gene Expression Profiles	1.0	1.42941
cell recognition	GO Biological Process Annotations 2015	1.0	null
Unicellular trichome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.577
Gut granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.542
hsa-miR-4263	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.921135
MYB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.6706
hsa-miR-548f	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
H3K4me1_Breast vHMEC	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
JHU-029	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DB-88-VW47_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.58144
Hippocampal mossy fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.719
Water vascular system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.286
Interaction With Cumulus Cells And The Zona Pellucida	Reactome Pathways 2024	1.0	null
CC-03-PW00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.353113
located	GeneRIF Biological Term Annotations	1.0	null
NCI-H716	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Synaptonemal structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.441
Theca cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.794
Sarcoma_SARC_TCGA-PT-A8TR-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-HT-7873-01B-11R-2403-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Zbtb2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	18.8705
primary motor cortex (area M1, area 4)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.88842
stomach carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.295851
EF-30-GD67_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.402193
ZNF558	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	84.6183
NCI-H1770	COSMIC Cell Line Gene Mutation Profiles	1.0	null
5637	CCLE Cell Line Gene Expression Profiles	1.0	1.84802
JUN	JASPAR Predicted Transcription Factor Targets	1.0	null
Ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.636
Yolk granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.593
AF-12-IW93_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.89918
STAT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.035
lateral ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.179863
NCI-H810	GDSC Cell Line Gene Expression Profiles	1.0	1.85613
LMX1B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7743
Brain Lower Grade Glioma_LGG_TCGA-QH-A870-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PCGF4-22325352-293T-REX-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Polycystic Ovary Syndrome	DisGeNET Gene-Disease Associations	1.0	null
female reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.31694
PBX1	ChEA Transcription Factor Targets	1.0	null
positive regulation of homotypic cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
fibril	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.344556
TFAP4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.4305
PMC6606599-41598_2019_45777_MOESM14_ESM.xlsx-SAVA_DE_genes_promoter_DMRs-Unnamed_29_TBXT	Rummagene Transcription Factor Associations 2026	1.0	null
regulation of reproductive process	GO Biological Process Annotations 2015	1.0	null
Male infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.984
RPS20	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.51368
Ovarian cumulus cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.293
PD-26-DC63_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.518757
kinasec	GeneRIF Biological Term Annotations	1.0	null
GSE206729_2_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
OSR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.8464
whole body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30433
pab122	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-8001-01A-11R-2204-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Bladder Urothelial Carcinoma_BLCA_TCGA-FD-A3B7-01A-31R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary motor cortex (area M1, area 4)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.21054
SCC9	CCLE Cell Line Gene Expression Profiles	1.0	1.79462
positive regulation of T cell proliferation	GO Biological Process Annotations 2023	1.0	null
EKVX	CCLE Cell Line Gene CNV Profiles	-1.0	-2.59452
Starch grain	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.642
Lassa Fever Virus_4hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.05182
NCI-H510A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0819
Theca folliculi	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.345
orbital frontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.931032
external encapsulating structure	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.879633
dependent	GeneRIF Biological Term Annotations	1.0	null
ca2	GeneRIF Biological Term Annotations	1.0	null
central nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052725
iron-sulfur cluster transfer complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.535
secondary oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.759086
Visceral mass	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.223
PMC9160255-41467_2022_30710_MOESM6_ESM.xlsx-DHT_AR_ASO_super_enhancers-ENSEMBL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Hematologic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.028
integral component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.412601
positive regulation of molecular function	GO Biological Process Annotations 2015	1.0	null
Retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.112
FOS_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of multicellular organismal process	GO Biological Process Annotations 2015	1.0	null
head	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.051468
Head and Neck squamous cell carcinoma_HNSC_TCGA-F7-A50G-01A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HS944T	CCLE Cell Line Gene Expression Profiles	1.0	1.50806
glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.703536
channels	GeneRIF Biological Term Annotations	1.0	null
Perturb_15084_KD_SLC4A11_SRP238854	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	-20.0
THRB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	115.069
ZFP14	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	76.3177
496100418_TCx_no dementia_TBI_85_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.65732
vesicle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
zp3	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3653	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
DBTRG05MG	CCLE Cell Line Gene CNV Profiles	-1.0	-3.20966
axoneme	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.376202
NCIH1385	CCLE Cell Line Gene CNV Profiles	1.0	2.32995
CALU-6	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953324
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-7102-01A-11R-2016-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
AC-78-GT35_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.27342
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
KELLY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02545
pellucida	GeneRIF Biological Term Annotations	1.0	null
IRF7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.711
PKNOX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.8544
AA-81-IB40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.282606
multiple sclerosis	GAD Gene-Disease Associations	1.0	null
regulation of phosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
molecular_function	GO Molecular Function Annotations 2015	1.0	null
SNAI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.8465
Ovotestis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.888
WA-15-KX40_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.971511
Sarcoma_SARC_TCGA-QC-A7B5-01A-11R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.569552
cellular_component	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
SNU-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Leaf primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.995
PMC10794847-mmc6.xlsx-PIAS1_KD_up-Table_S5_Genes_differentially_expressed_with_PIAS1_knockdown_in_keratinocytes_cultured_in_the_differentiation_condition_Related_to_Figure_5_AR	Rummagene Transcription Factor Associations 2026	1.0	null
GATA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.6045
whole plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.595255
Primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.829
GSE174701_1_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Hand1::Tcf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.6897
sites	GeneRIF Biological Term Annotations	1.0	null
TRIM28	ChEA Transcription Factor Targets	1.0	null
Specific developmental disorder	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.341
QF-00-NO42_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.902788
Female pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.417
AMO-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.8323
HS746T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.47043
KMOE-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE142210_11_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Ovarian follicular epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.58
GSE152699,GSE152723_0_v_1_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hsa-miR-607	TargetScan Predicted Conserved microRNA Targets	1.0	0.474009
BCL11A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.8311
cellular_component	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
External encapsulating structure	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
KRAS.LUNG.BREAST_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
hsa-miR-4661-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.2992
Anal fin	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.89
HOP-62	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC4011	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12743
AB-53-AW00_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.936903
H3K9me3_fibroblast of lung_hg19_2	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-30a	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE142210_9_v_5_panobinostat_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ESS-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
extracellular region part	GO Cellular Component Annotations 2015	1.0	null
Parkin_OE_GDS4476_55_human_U87MG	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
ATF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3225
Endometriosis	DisGeNET Gene-Disease Associations	1.0	null
Cyclin B1-CDK1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.21
PAX9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.81
G96	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33705
DARS1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.19175
NOTO	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.7788
RKO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H1666	COSMIC Cell Line Gene Mutation Profiles	1.0	null
fatty liver disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.172799
LHX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.7259
PMC8764619-mmc7.xlsx-supplementary_table_for_the_Ven-GSE131737_TFAP2B_target_genes_H_sapiens_970_TFAP2B	Rummagene Transcription Factor Associations 2026	1.0	null
NCIH226	CCLE Cell Line Gene CNV Profiles	-1.0	-1.79837
spanning component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.472011
eye and adnexa disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.222136
TBX19	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.3649
Tetanus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.257
regulation of exocytosis	GO Biological Process Annotations 2015	1.0	null
sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.204923
Pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.052
GSE226285_3_v_0_nr0b1_human	RummaGEO Gene Perturbation Signatures	1.0	null
AC-86-KF37_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.931047
NA-30-HS87_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.85647
Bract	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.637
internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.42784
Ameloblastic layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.594
dorsolateral prefrontal cortex_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.23006
SCLY	ChEA Transcription Factor Targets	1.0	null
SMAD2/3-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE118816_0_v_3_myo1c_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE184892_0_v_5_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MX-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.3372
positive regulation of reproductive process	GO Biological Process Annotations 2023	1.0	null
JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5431
NCIH322	CCLE Cell Line Gene Expression Profiles	-1.0	-3.00055
Somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.888
Ovarian follicular epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.1
ETV2::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.0084
diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.689092
light-harvesting complex, peripheral complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.563
Ptf1a	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	66.7585
Cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.665
NCI-H1155	GDSC Cell Line Gene Expression Profiles	1.0	1.4173
Granuloma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.615
BC-82-PP66_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.36802
primary visual cortex (striate cortex, area V1/17)_16 pcw_M_12837	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.78043
NCIH23	CCLE Cell Line Gene Expression Profiles	1.0	1.44835
positive regulation of cell activation	GO Biological Process Annotations 2015	1.0	null
HNF4A	JASPAR Predicted Transcription Factor Targets	1.0	null
Trophectoderm	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.033
DOV13	CCLE Cell Line Gene CNV Profiles	1.0	1.55315
Immune system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.289
Perinuclear region of cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.732
integral component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.148766
Ebf4	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	56.0582
needed	GeneRIF Biological Term Annotations	1.0	null
Nutrition disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.109
cumulus-oocyte complex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.168
P3HR1	CCLE Cell Line Gene Expression Profiles	1.0	1.73854
regulation of phosphorylation	GO Biological Process Annotations 2015	1.0	null
Corona	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.161
ovarian dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.975482
XE-69-AT35_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.628565
spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.188194
sera	GeneRIF Biological Term Annotations	1.0	null
cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040801
EVX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.7782
primary auditory cortex (core)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.07113
HT	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Granule cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
Germinal disc	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.358
ovary	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
primary motor cortex (area M1, area 4)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.890722
MCF 10A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
Ooplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.077
BHLHE22	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.7759
rectum	HPA Tissue Protein Expression Profiles	1.0	1.10751
acrosin binding	GO Molecular Function Annotations 2023	1.0	null
Epiblast	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.19
sufficient	GeneRIF Biological Term Annotations	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CV-A6JM-01A-11R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SUM 1315M02	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.00104
PHF8-20622854-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
regulation of primary metabolic process	GO Biological Process Annotations 2015	1.0	null
ZNF175	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.4776
TC32	CCLE Cell Line Gene Expression Profiles	1.0	1.49985
ZR-75-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.3312
hsa-miR-4427	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
WA-45-ZD47_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.391361
KMS-27	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.21327
Secondary oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.403
extracellular region	LOCATE Predicted Protein Localization Annotations	1.0	null
ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.42091
Acrosomal vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.686
HCC2157	COSMIC Cell Line Gene CNV Profiles	1.0	2.12439
Refractive error	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.91549
GSE202434,GSE202438_9_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
primary motor-sensory cortex (samples)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.45437
GSE175787_8_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
reproductive process	GO Biological Process Annotations 2015	1.0	null
hsa-miR-3179	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08577
ventrolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.52525
MDA-MB-435	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855454
SUZ12	ENCODE Transcription Factor Targets	1.0	null
ESR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5767
male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.74426
Thoracic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.186
KLF9	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.1763
EB-3	GDSC Cell Line Gene Expression Profiles	1.0	1.43707
WC-33-YP46_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.856491
H3K27me3_HeLa-S3_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
NB69	DepMap CRISPR Gene Dependency	1.0	10.8512
positive regulation of acrosome reaction	GO Biological Process Annotations 2025	1.0	null
THP1	CCLE Cell Line Gene CNV Profiles	1.0	1.96439
Autoimmune disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.165
Genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.704
Male pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.436
single-organism transport	GO Biological Process Annotations 2015	1.0	null
PMC6826333__F1	PFOCR Pathway Figure Associations 2024	1.0	null
ZBTB12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.9958
FOS	JASPAR Predicted Transcription Factor Targets	1.0	null
gastrointestinal system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051628
TWIST1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.0525
Infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.855
ZNF282	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.1145
RUNX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3761
germ	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.65543
Reproduction	Reactome Pathways 2014	1.0	null
GSE135030_8_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
NCI-H2172	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE202434,GSE202438_15_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
D-283MED	GDSC Cell Line Gene Expression Profiles	-1.0	-2.37142
glycoprotein	GeneRIF Biological Term Annotations	1.0	null
ZNF184	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.5467
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.211
Pars recta	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.278
cerebellar cortex_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.66742
PMC11705763-mmc8.pdf-16-ZNF679_ZNF679	Rummagene Transcription Factor Associations 2026	1.0	null
POU2F1::SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.9063
HOXA4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.0184
reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.19964
positive regulation of lymphocyte activation	GO Biological Process Annotations 2015	1.0	null
GSE135030_11_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
significant	GeneRIF Biological Term Annotations	1.0	null
Epididymal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.967
GSE154350_1_v_0_ascl2_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of immune response	GO Biological Process Annotations 2025	1.0	null
Divisome complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.975
CHAGO-K-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
primary somatosensory cortex (area S1, areas 3,1,2)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.21172
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-EA-A43B-01A-81R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC4705475__F6	PFOCR Pathway Figure Associations 2023	1.0	null
Multimerin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.671
HNF1A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.9004
SNU-1040	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC2814	CCLE Cell Line Gene Expression Profiles	1.0	1.66149
CCK-81	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Hepatic Cirrhosis_Liver_GSE6764	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.97824
ZR7530	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.23892
GSE160817_3_v_8_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
EGR1	ChEA Transcription Factor Targets	1.0	null
positive regulation of leukocyte activation	GO Biological Process Annotations 2015	1.0	null
Luteal cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.746
positive regulation of multi-organism process	GO Biological Process Annotations 2015	1.0	null
acrosomal vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.52597
PSS008	DepMap CRISPR Gene Dependency	1.0	3.03496
Reproduction	Reactome Pathways 2024	1.0	null
PPARD-21283829-MYOFIBROBLAST-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Binding Site Profiles	1.0	null
PF-382	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hypertension	GAD Gene-Disease Associations	1.0	null
Gas bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.791
SB-94-ZA83_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.178
pd5	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.685
Micropyle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.644
extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
H4K20me1_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
CHL-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
binding of sperm to zona pellucida	GO Biological Process Annotations 2015	1.0	null
MDAMB453	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	1.36131
GD-51-SU60_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.59751
QF-00-NO42_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.05224
positive regulation of T cell activation	GO Biological Process Annotations 2025	1.0	null
LN464	CCLE Cell Line Gene Expression Profiles	1.0	1.50164
Insulin Resistance	dbGAP Gene-Trait Associations	1.0	0.839582
striatum_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.26343
H3K9ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
posteroventral (inferior) parietal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14647
GSE210662_2_v_1_znf165_human	RummaGEO Gene Perturbation Signatures	1.0	null
TRAPPC2B	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.3076
ML1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.81379
HS 746T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.10971
positive regulation of immune system process	GO Biological Process Annotations 2015	1.0	null
Sperm flagellum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.301
NKX2-5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4054
RVH421	CCLE Cell Line Gene Expression Profiles	1.0	1.59491
GSE226285_2_v_0_nr0b1_human	RummaGEO Gene Perturbation Signatures	1.0	null
REH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
P-type trefoil	InterPro Predicted Protein Domain Annotations	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-KC-A4BR-01A-32R-A32Y-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ATF2_S_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	-1.0	null
GATA6-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.914315
TGIF2LX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.2177
negative regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2023	1.0	null
Oophoritis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.255
embryo	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.951685
GSE146982_7_v_5_metformin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Germ cell cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.203
MHH-PREB-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
flower	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.714189
GSX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7634
FLI1::DRGX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.9636
regulation of t cell proliferation	GO Biological Process Annotations 2015	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2MD-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC12582692-medi-104-e45093-s001.xlsx-Table_S1-Table_S1_Genetic_instruments_of_plasma_proteins_for_MR_analysis_NR3C2	Rummagene Transcription Factor Associations 2026	1.0	null
GATA6-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Metabolite levels	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.522185
FU97	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE162892_3_v_0_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
UOK101	DepMap CRISPR Gene Dependency	1.0	2.18275
endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
MYF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.039
CAKI-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.58485
hippocampus (hippocampal formation)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.96564
QB-42-MC63_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.477624
positive regulation of catalytic activity	GO Biological Process Annotations 2015	1.0	null
PMC10243915-uxad037_suppl_supplementary_table_s1b-table_s3b.pdf-233-SP110_SP110	Rummagene Transcription Factor Associations 2026	1.0	null
outer dense fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.644429
KYSE-150	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.461
Tapetum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
GSE214212_2_v_0_chd6_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE202434,GSE202438_12_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Protein phosphatase 4 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.692
gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.05325
SK-MES-1	GDSC Cell Line Gene Expression Profiles	1.0	2.91452
Glutamate synthase complex (NADPH)	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.515
cytoplasmic membrane-bounded vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08882
OC316	CCLE Cell Line Gene CNV Profiles	-1.0	-2.07731
Embryonic tracheal system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.579
TEAD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.3089
acrosin binding	GO Molecular Function Annotations 2015	1.0	null
gastric adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.312102
Azoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.613
spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.191368
XE-69-AT35_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.255159
gallbladder	HPA Tissue Protein Expression Profiles	1.0	1.10751
GP5D	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCI-H1993	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OTX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.3529
Middle silk gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.009
phi1	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.552
cell	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.756799
Planktonic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.842
Spermatogonium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.448
MYOG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	74.1048
Eye degenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
single-organism localization	GO Biological Process Annotations 2015	1.0	null
GSE224599_0_v_1_tfcp2_human	RummaGEO Gene Perturbation Signatures	1.0	null
Calcium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.081
embryoid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.447192
Phycobiont	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.761
H-EMC-SS	GDSC Cell Line Gene Expression Profiles	-1.0	-1.96882
NUP58	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.07763
multicellular organismal process	GO Biological Process Annotations 2015	1.0	null
Lower respiratory tract disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
IRF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.0
MKN45	CCLE Cell Line Gene CNV Profiles	-1.0	-1.42162
BHLHE40	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.061
Ebf2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.9432
hel12469	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.676
primary auditory cortex (core)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.842147
Morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.538
placenta	HPA Tissue Protein Expression Profiles	1.0	1.10751
SCC25	CCLE Cell Line Gene Expression Profiles	1.0	1.94444
NOMO1	CCLE Cell Line Gene Expression Profiles	-1.0	-1.46551
GSE168797_1_v_5_cannabidiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
WM793	CCLE Cell Line Gene Expression Profiles	1.0	3.40798
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Nearest_Ensembl_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
DA-33-CX68_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.270336
GSE218727_0_v_3_zkscan3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Brain Lower Grade Glioma_LGG_TCGA-S9-A7R1-01A-12R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE111247_11_v_4_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
metabolic	GAD High Level Gene-Disease Associations	1.0	0.295739
GSE162892_3_v_2_sox9_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CMK	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GSE178267_2_v_4_vemurafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE135030_11_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hemangioendothelioma cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.827
ZSCAN16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.693
blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.290652
FD-59-TC81_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.01886
GATA1::TAL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.1629
CA46	GDSC Cell Line Gene Expression Profiles	1.0	1.95535
intrinsic component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
HNFA-21074721-CACO-2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ERF::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.7184
Inhibin B complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.515
IA-LM	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NB10	DepMap CRISPR Gene Dependency	1.0	16.5774
MDA-MB-468	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Oviduct epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.646
dorsal thalamus_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.05983
negative regulation of fertilization	GO Biological Process Annotations 2015	1.0	null
mediodorsal nucleus of thalamus_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.901047
hsa-miR-30d	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
Developmental disorder of mental health	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.341
FOS::JUND	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.7386
NFYA-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
OAW42	DepMap CRISPR Gene Dependency	1.0	4.1724
GD-51-SU60_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.851189
Head and Neck squamous cell carcinoma_HNSC_TCGA-P3-A5QA-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Wt1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	82.1592
posteroventral (inferior) parietal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.846954
TEAD4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7818
GSE218060_1_v_3_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Sporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.745
Prostate adenocarcinoma_PRAD_TCGA-HC-7738-11A-01R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ovary	GTEx Tissue Gene Expression Profiles	1.0	2.18987
female reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37864
GSE202434,GSE202438_4_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
Eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.478
Pancreatic adenocarcinoma_PAAD_TCGA-HZ-7918-01A-11R-2156-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Spermatozoon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.045
SUDHL4	CCLE Cell Line Gene CNV Profiles	-1.0	-2.25416
primary somatosensory cortex (area S1, areas 3,1,2)_2 yrs_F_12979	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.910801
GD-51-SU60_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.793699
PMC5444746-oncotarget-08-30328-s002.xlsx-SI01_ChIPSeq_H3K9me_AR-Gene_Symbol_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-MZ-A7D7-01A-21R-A34R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NCI-H1048	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02251
urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cervical mucus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.215
membrane part	GO Cellular Component Annotations 2015	1.0	null
p0005	GeneRIF Biological Term Annotations	1.0	null
Primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.308
POU3F2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.6899
Ascidian	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.135
germ cell cancer cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.44181
Embryoid body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.189
GSE202434,GSE202438_12_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Axonemal dynein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.769
DE-24-AX80_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.237619
decrease	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-3972	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.880544
DMRTA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.4316
CREB3L1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0933
SCRT1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.4883
Zona pellucida	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.433
NCI-H2052	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893908
oophoritis	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.68091
Cotyledon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.924
regulation of protein kinase activity	GO Biological Process Annotations 2015	1.0	null
HCC-33	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-7072-01A-21R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-4802-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.40969
NTERA-2	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.16131
U-2932	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.20298
PMC9307901-mmc2.xlsx-S5-GATA6-AS1_GATA6	Rummagene Transcription Factor Associations 2026	1.0	null
blepharophimosis, ptosis, and epicanthus inversus syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.029
ZNF136	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0547
Tectum mesencephali	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.707
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-version_2_4_AR	Rummagene Transcription Factor Associations 2026	1.0	null
disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.199033
Hermaphroditism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.081
PMC3879300-pone.0084292.s002.xlsx-SPD_dataset-Gene_symbol_HOXD13	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7378211-41598_2020_69015_MOESM3_ESM.xlsx-EWS-WT1_rep1_testp-7_annotatedp-Gene_Name_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.133444
Ovum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.895
H2AFZ	ENCODE Transcription Factor Targets	1.0	null
CREB3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.4034
TP63	ChEA Transcription Factor Targets	1.0	null
GSE214931_1_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
Female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Sox1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	19.1957
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
hsa-miR-3148	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
Prostate adenocarcinoma_PRAD_TCGA-KK-A8IA-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary auditory cortex (core)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.30938
Prostate adenocarcinoma_PRAD_TCGA-EJ-5521-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
POLR2A_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of vesicle-mediated transport	GO Biological Process Annotations 2015	1.0	null
PBX1-22567123-OVCAR3-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE161800_0_v_2_cisplatin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Zymogen granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.643
G292CLONEA141B1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.67462
granulosa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37225
PMC8437976-41416_2021_1470_MOESM2_ESM.xls-List_of_MAF_in_SNP_Rectum-Hugo_Symbol_MAF	Rummagene Transcription Factor Associations 2026	1.0	null
EGR1-20690147-ERYTHROLEUKEMIA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H810	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85626
GSE174498,GSE174500_3_v_4_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
hippocampus (hippocampal formation)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.04085
Reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.369
TBX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.3079
TBX18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.8149
SUM52PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.978806
CAL-148	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.935579
OCIMY5	CCLE Cell Line Gene CNV Profiles	-1.0	-1.77918
negative regulation of cellular process	GO Biological Process Annotations 2023	1.0	null
FOXO1::ELK3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.2819
MXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5868
Pericarp	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.788
open-angle glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.79
G44	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.29582
451LU	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Metallochaperone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.547
Hatching liquid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.263
Plasma membrane light-harvesting complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.684
Kidney Chromophobe_KICH_TCGA-KN-8430-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PMC11419236-media-2.pdf-38-TSC22D1_TSC22D1	Rummagene Transcription Factor Associations 2026	1.0	null
primary auditory cortex (core)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.828946
EBC-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.17146
phycobiont	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.879089
primary somatosensory cortex (area S1, areas 3,1,2)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.50234
MSC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.0835
sf-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.68188
Prostate cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.108
PMC7346435-12864_2020_6860_MOESM6_ESM.xlsx-H1_ZF_Oocyte_Specific-Gene_SymbolH_CREBZF	Rummagene Transcription Factor Associations 2026	1.0	null
Dendrite cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.616
SKNFI	CCLE Cell Line Gene CNV Profiles	-1.0	-2.26917
hippocampus	HPA Tissue Protein Expression Profiles	-1.0	-1.57517
KMS26	CCLE Cell Line Gene CNV Profiles	-1.0	-1.52234
BE2M17	DepMap CRISPR Gene Dependency	1.0	6.16774
GSE223241_2_v_0_cdkn2a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE213228_1_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
positive regulation of lymphocyte proliferation	GO Biological Process Annotations 2023	1.0	null
GSE202434,GSE202438_12_v_5_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NR1H2::RXRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.08
regulation of multi-organism process	GO Biological Process Annotations 2015	1.0	null
urogenital system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.68204
Primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.412
observed	GeneRIF Biological Term Annotations	1.0	null
regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2025	1.0	null
recombinant	GeneRIF Biological Term Annotations	1.0	null
Char syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.34
Follicular fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.981
reproduction	GO Biological Process Annotations 2015	1.0	null
regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
SOX2	ChEA Transcription Factor Targets	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N9-A4PZ-01A-22R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
WA-15-KX40_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.916029
SKLMS1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.44466
CEBPG	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.3885
inferolateral temporal cortex (area TEv, area 20)_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1634
RRP9	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.32243
SKM-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF354C	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	14.6875
PMC8283158-mmc2.xlsx-TCF4_ChIP-symbol_TCF4	Rummagene Transcription Factor Associations 2026	1.0	null
Glutamate synthase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.557
Cortical granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.793
KATOIII	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5725
Disease by infectious agent	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.602
Female reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.175
female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.608494
anterior (rostral) cingulate (medial prefrontal) cortex_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15152
MM383	DepMap CRISPR Gene Dependency	1.0	2.75352
CatSper complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.445
ACCMESO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.4078
Disorder of sexual development	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.565
MJ	DepMap CRISPR Gene Dependency	1.0	3.95204
Glaucoma	DisGeNET Gene-Disease Associations	1.0	null
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7213-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-D6-6827-01A-11R-1915-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Spermatogenic failure 9	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.125
GSE174701_4_v_7_maml3_human	RummaGEO Gene Perturbation Signatures	1.0	null
SMAD3-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
HOXB8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.6258
OVCAR-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852967
posteroventral (inferior) parietal cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.69612
inferolateral temporal cortex (area TEv, area 20)_1 yrs_F_12830	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.919925
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-A6DA-01A-31R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CTCF_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE217541,GSE217543_0_v_2_tet1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JD-47-WR37_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.281595
MF-04-HB41_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.266959
NCIH2066	CCLE Cell Line Gene Expression Profiles	-1.0	-2.05598
496100382_PCx_no dementia_TBI_78_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.79919
DPY30	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.28789
regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
NANOG-16153702-HESC-human	ChEA Transcription Factor Binding Site Profiles	1.0	null
SNU626	DepMap CRISPR Gene Dependency	1.0	3.20026
dorsolateral prefrontal cortex_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.23145
dorsolateral prefrontal cortex_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.64577
GSE174498,GSE174500_3_v_8_asparaginase_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HMEL	CCLE Cell Line Gene Expression Profiles	1.0	2.04784
PMC4705475__F6	PFOCR Pathway Figure Associations 2024	1.0	null
positive regulation of kinase activity	GO Biological Process Annotations 2015	1.0	null
GSE135030_3_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
CMK115	DepMap CRISPR Gene Dependency	1.0	5.81653
ISL2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.2159
hsa-miR-1207-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
A-673	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02231
Tobacco Use Disorder	HuGE Navigator Gene-Phenotype Associations	1.0	null
regulation of transport	GO Biological Process Annotations 2015	1.0	null
GSE162015_2_v_0_nfkb1_human	RummaGEO Gene Perturbation Signatures	1.0	null
Gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.237
cell-cell recognition	GO Biological Process Annotations 2015	1.0	null
Whole body	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.423
FB-95-JD99_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.25843
extracellular matrix part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.052877
NANOG-16153702-HESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
H3K27me3_Adult Liver	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Secretory vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.325
C7orf50	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.54262
C-peptide levels in type I diabetes	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.739794
GSE175787_5_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
immature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.37225
cellular_component	GO Cellular Component Annotations 2015	1.0	null
Blastocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.592
FOXH1-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_3_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
THRA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.0659
NCI-H1688	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DMS 53	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03601
G130	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976065
vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.954005
Acquired metabolic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.103
Messenger ribonucleoprotein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.992
regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
Granulosa cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.595
Axenfeld-Rieger syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.084
FOXH1-21741376-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE184892_0_v_3_trehalose_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE201657_0_v_1_ash2l_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Usher syndrome type 3A	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.535
Inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.48
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Gene_Name_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
BC-82-PP66_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.937085
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_2_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
HS 578T	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85626
YMB1	CCLE Cell Line Gene CNV Profiles	1.0	2.59608
B800-850 antenna complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.545
chr11_60935604_C_T_b38	GTEx eQTL 2025	1.0	1.13141
GSE175787_13_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
ERF::FOXO1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.519
positive regulation of phosphate metabolic process	GO Biological Process Annotations 2015	1.0	null
Runx1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	29.0505
WSUDLCL2	CCLE Cell Line Gene Expression Profiles	-1.0	-1.9604
male reproductive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.055899
EW-3	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cterminus	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-204	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
TFAP2E	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	67.2119
H2AFZ_keratinocyte_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-YL-A8HJ-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
sperm	GeneRIF Biological Term Annotations	1.0	null
posterior (caudal) superior temporal cortex (area 22c)_19 pcw_F_12885	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.17606
positive regulation of acrosome reaction	GO Biological Process Annotations 2023	1.0	null
hippocampus (hippocampal formation)_17 pcw_F_12880	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.70604
Perianth	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.252
WA-15-KX40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.00992
RARA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	51.6456
UACC893	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.00248
GSE162892_3_v_2_isox_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H1793	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Primary oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	3.388
promoted	GeneRIF Biological Term Annotations	1.0	null
SNU407	CCLE Cell Line Gene CNV Profiles	1.0	1.60034
uterus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.0698
Reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.539
ME-180	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.988335
AGS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
GSE252958_1_v_0_znf469_human	RummaGEO Gene Perturbation Signatures	1.0	null
pancreas adenocarcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.158778
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
patterns	GeneRIF Biological Term Annotations	1.0	null
positive regulation of cellular metabolic process	GO Biological Process Annotations 2015	1.0	null
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
A2780	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.934222
FB-19-ZG81_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.250891
hsa-miR-4446-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
KMH2	CCLE Cell Line Gene Expression Profiles	1.0	2.20518
negative regulation of fertilization	GO Biological Process Annotations 2025	1.0	null
CYTL1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	4.67639
Mitral cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
LCLC-103H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.20484
positive regulation of reproductive process	GO Biological Process Annotations 2015	1.0	null
U2904	DepMap CRISPR Gene Dependency	1.0	3.92329
HCC1599	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.68599
spermatid	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.231114
HSF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.7895
plasma membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.044291
TYK-NU	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HC-94-AQ98_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.463422
Oviduct	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.112
FTC-133	GDSC Cell Line Gene Expression Profiles	-1.0	-1.74341
Bladder Urothelial Carcinoma_BLCA_TCGA-GC-A6I1-01A-12R-A31N-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
protein binding	GO Molecular Function Annotations 2015	1.0	null
SMAD4-21741376-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H2087	COSMIC Cell Line Gene Mutation Profiles	1.0	null
zp4	GeneRIF Biological Term Annotations	1.0	null
positive regulation of biological process	GO Biological Process Annotations 2015	1.0	null
primary motor cortex (area M1, area 4)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.13943
GSE202434,GSE202438_7_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Condensed nuclear chromosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.347
intracellular part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.61968
Ovarian primitive germ cell tumor	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.044
positive regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
BHY	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.0819
Infundibulum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.861
regulation of transferase activity	GO Biological Process Annotations 2015	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-66-2769-01A-02R-0851-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
liver	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.249329
KG1C	CCLE Cell Line Gene Expression Profiles	-1.0	-2.21593
Hypertension	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.609691
TP63-23658742-EP156T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Floret	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.714
dorsolateral prefrontal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.10232
Disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.671
Ovarian cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.201
PMC5444746-oncotarget-08-30328-s002.xlsx-SI02_Gene_symbols-1912_ChIP-Seq_H3K9me1_2_demethylation_and_ChIP-Seq_AR_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A44Q-06A-11R-A266-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Vascular disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.33
egg coat	GO Cellular Component Annotations 2023	1.0	null
Cerebral subcortex	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.856
Sarcoma_SARC_TCGA-FX-A48G-01A-11R-A24X-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
nail-patella syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.366
hsa-miR-30c	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Mitochondrial cloud	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.476
TBX5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.344
Tcf12	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.0688
changed	GeneRIF Biological Term Annotations	1.0	null
organism form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.961607
Endometriosis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.187
regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
NFKB2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.2549
PMC9160255-41467_2022_30710_MOESM6_ESM.xlsx-DHT_AR_ASO_super_enhancers-SYMBOL_AR	Rummagene Transcription Factor Associations 2026	1.0	null
PMC7346435-12864_2020_6860_MOESM6_ESM.xlsx-H1_ZF_Oocyte_Specific-GeneH_CREBZF	Rummagene Transcription Factor Associations 2026	1.0	null
fertilization	GO Biological Process Annotations 2015	1.0	null
H3K4me2_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
hsa-miR-4802-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
hippocampus (hippocampal formation)_18 yrs_M_12984	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25286
P-type trefoil, conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
FOS_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
HS821T	CCLE Cell Line Gene CNV Profiles	-1.0	-1.5806
PC-14	COSMIC Cell Line Gene Mutation Profiles	1.0	null
regulation of protein phosphorylation	GO Biological Process Annotations 2015	1.0	null
DBTRG-05MG	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.15179
CTBP1-25329375-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
FOSL2::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4812
regulation of mononuclear cell proliferation	GO Biological Process Annotations 2015	1.0	null
Egg coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	3.217
GSE162892_4_v_5_isox_human	RummaGEO Drug Perturbation Signatures	1.0	null
single fertilization	GO Biological Process Annotations 2015	1.0	null
GSE181461_1_v_4_trim28_human	RummaGEO Gene Perturbation Signatures	1.0	null
Metaphase plate	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.683
NR2C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.8727
GCIY	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Activin AB complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.585
pronucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.133604
Integrin alpha6-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.849
Kidney renal papillary cell carcinoma_KIRP_TCGA-BQ-5879-01A-11R-1592-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MFM-223	GDSC Cell Line Gene Expression Profiles	-1.0	-1.67905
germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.10112
regulation of cellular localization	GO Biological Process Annotations 2015	1.0	null
PMC7430827-12864_2020_6933_MOESM4_ESM.xlsx-Sheet1-Additional_file_4_Table_S4_A_list_of_3_062_genes_containing_locus_where_only_KD_had_non-synonymous_SNPs_compared_to_other_duck_breeds_AR	Rummagene Transcription Factor Associations 2026	1.0	null
Brain Lower Grade Glioma_LGG_TCGA-TM-A84B-01A-11R-A36H-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Floral meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.169
Inner acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.951
SK-MEL-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
PGR	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.0414
SMARCA4-23332759-OLIGODENDROCYTES-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Gene_Name_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
Sarcoma_SARC_TCGA-IS-A3KA-01A-11R-A21T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COR-L279	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC7021771-41467_2020_14684_MOESM7_ESM.xlsx-CASZ1_ChIPseq_in_SMS-CTR_MEKi-Nearest_Ensembl_CASZ1	Rummagene Transcription Factor Associations 2026	1.0	null
BF-10-IO69_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.550572
spanning component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.472011
Head and Neck squamous cell carcinoma_HNSC_TCGA-DQ-7590-01A-11R-2232-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
positive regulation of transferase activity	GO Biological Process Annotations 2015	1.0	null
extracellular matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.757707
NCI-H322M	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Inflorescence stalk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.924
Stimulated C-peptide levels in type I diabetes	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.539794
extracellular	GeneRIF Biological Term Annotations	1.0	null
Outer acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.746
FOS::JUNB	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.315
SMAD2/3-21741376-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
RF-48	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Megasporangium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.855
RCM-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Theca externa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.215
infertility	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.35943
TEAD2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.7325
positive regulation of immune response	GO Biological Process Annotations 2023	1.0	null
vesicle-mediated transport	GO Biological Process Annotations 2015	1.0	null
KA-63-FH23_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.299631
anterior (rostral) cingulate (medial prefrontal) cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.980299
NCI-H835	COSMIC Cell Line Gene Mutation Profiles	1.0	null
NCI-H1563	COSMIC Cell Line Gene Mutation Profiles	1.0	null
PMC7378211-41598_2020_69015_MOESM3_ESM.xlsx-EWS-WT1_rep1_testp-7_annotatedp-ID_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
NCI-H2110	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ciliary part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.110845
transport	GO Biological Process Annotations 2015	1.0	null
ZBTB7A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.2304
independent	GeneRIF Biological Term Annotations	1.0	null
BRCA1_DEPLETION_GDS2189_121_human_MCF10A mammary epithelial cells (MECs)	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	-1.0	null
GSE171572_5_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
DEL	CCLE Cell Line Gene CNV Profiles	1.0	2.03889
GC-32-SH41_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.321295
NCI-H1915	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.963089
positive regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
Hematopoietic system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
Disease of metabolism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.532
TEAD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5803
Sperm head	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.209
EW-13	GDSC Cell Line Gene Expression Profiles	1.0	1.54052
SPIC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.1844
H3K9me3_fibroblast of lung_hg19_3	ENCODE Histone Modification Site Profiles	1.0	null
Endocrine system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.9
MEL-745A cl. DS19 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.621
KB-59-KM40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.261145
KMS21BM	CCLE Cell Line Gene Expression Profiles	1.0	2.17685
negative regulation of reproductive process	GO Biological Process Annotations 2015	1.0	null
regulation of lymphocyte proliferation	GO Biological Process Annotations 2015	1.0	null
SNU840	CCLE Cell Line Gene Expression Profiles	-1.0	-1.68771
PTEN_KD_GDS2958_100_human_HCC827 - NON-SMALL CELL LUNG carcinoma cell line	GEO Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	null
hsa-miR-3126-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
globe disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.225229
ASCL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	148.197
regulation of T cell proliferation	GO Biological Process Annotations 2023	1.0	null
cell part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
GSE80819_0_v_1_panobinostat_human	RummaGEO Drug Perturbation Signatures	1.0	null
FOXH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.9907
NFKB1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.734
primary motor-sensory cortex (samples)_8 pcw_M_13058	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36295
HCC38	CCLE Cell Line Gene CNV Profiles	1.0	1.85815
NCI-H650	GDSC Cell Line Gene Expression Profiles	1.0	2.57704
NCI-H1693	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.56457
Nanophthalmos	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.179
Lateral element	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.834
GSE226285_2_v_0_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
TCF7L2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.4343
negative regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2025	1.0	null
OKAJIMA	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19423
PMC3303130-NIHMS40463-supplement-4.xls-KamKwaMuk_AA_differences-human_geneID_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
MCF7	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.696107
Proventriculus	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.504
positive regulation of mononuclear cell proliferation	GO Biological Process Annotations 2015	1.0	null
OCIMY5	DepMap CRISPR Gene Dependency	1.0	3.87415
TGIF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.975
E2F4	ENCODE Transcription Factor Targets	1.0	null
KRAS.BREAST_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
stomach	HPA Tissue Protein Expression Profiles	1.0	1.10751
GSE238018_3_v_0_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CN-A63T-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MDAMB436	CCLE Cell Line Gene CNV Profiles	1.0	1.39364
glycocalyx	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.761342
Ammonium transmembrane transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.931
GSE232786_1_v_0_otud1_human	RummaGEO Gene Perturbation Signatures	1.0	null
PMC6499311-supp_gr.243345.118_Supplemental_Table_S8.xlsx-S8B_Het1A-HNF4A_2d_5x_open-Gene_Name_HNF4A	Rummagene Transcription Factor Associations 2026	1.0	null
GSE132369,GSE132371_3_v_0_cccp_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Interaction With The Zona Pellucida	Reactome Pathways 2014	1.0	null
positive regulation of phosphorus metabolic process	GO Biological Process Annotations 2015	1.0	null
prevention of polyspermy	GO Biological Process Annotations 2025	1.0	null
Stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.784
ATPase dependent transmembrane transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.841
exocytosis	GeneRIF Biological Term Annotations	1.0	null
cell periphery	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.605284
Female accessory gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.502
Vitelline membrane	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.9
Ciliary body	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.848
JHOM2B	CCLE Cell Line Gene CNV Profiles	-1.0	-1.88705
Blastomere	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.616
Lung disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.031
NCI-H2196	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.61034
other source	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.432608
Aril	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.619
VENTX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0896
EOMES	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.8656
AC-60-EU98_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.386742
MN-60	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cytoplasm	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.675065
hsa-miR-4786-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
NR1D2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.0853
SCC-9	GDSC Cell Line Gene Expression Profiles	-1.0	-1.4441
CEBPB-22108803-LS180-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
DV-90	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
GSE218060_1_v_0_decitabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
tyrosine	GeneRIF Biological Term Annotations	1.0	null
striatum_4 yrs_M_12298	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.14647
cerebral cortex	HPA Tissue Protein Expression Profiles	-1.0	-0.875089
QF-00-NO42_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.07924
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A2JF-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
SNU-423	GDSC Cell Line Gene Expression Profiles	-1.0	-2.1354
GSE135030_8_v_0_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
Hyperandrogenism	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.281
COV413B	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.968468
CUX1-19635798-MULTIPLE HUMAN CANCER CELL TYPES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
follicle-stimulating hormone complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.365
SNAI3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.0074
ZNF317	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8794
HGC27	CCLE Cell Line Gene Expression Profiles	-1.0	-1.4728
Organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.584
CA-00-AR16_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.683818
Inhibin A complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.702
PMC8519939-41525_2021_248_MOESM5_ESM.xlsx-ATF2_S_UP_V1_DN-Gene_name_ATF2	Rummagene Transcription Factor Associations 2026	1.0	null
cardiovascular	GAD High Level Gene-Disease Associations	1.0	0.295739
Tentacle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.775
Acrosomal matrix	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.938
Respiratory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.214
JUN-21703547-K562-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSK3A_knockdown_205_GDS4305	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-1.33684
STAT3_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
H3K4me2_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Cell septum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.712
Actin cap	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.526
MAF::NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.5908
UACC-812	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.03601
Reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.431
bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.321909
Disease	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.341
GSE111247_11_v_9_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
protein kinase c signaling	GO Biological Process Annotations 2015	1.0	null
oviduct	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.89817
Egg coat	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	5.0
KURAMOCHI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2344
Acrosomal membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.039
striatum_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.885795
MYC-20876797-MEDULLOBLASTOMA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
RELA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.3889
Lung squamous cell carcinoma_LUSC_TCGA-43-6647-01A-11R-1820-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE213228_2_v_5_irak2_human	RummaGEO Gene Perturbation Signatures	1.0	null
WA-01 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.578
HF-67-IR57_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.403824
Pulse	dbGAP Gene-Trait Associations	1.0	0.479057
ovarian cumulus cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.364513
KMS-11	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.6208
496100508_PCx_possible Alzheimer's disease_no TBI_90-94_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.37279
BICR16	CCLE Cell Line Gene Expression Profiles	1.0	1.35675
TOLEDO	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.89557
Integumentary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.009
Extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
KMS27	CCLE Cell Line Gene CNV Profiles	1.0	1.81396
GATA1-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
MM.1S	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30462
KATO III	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71961
LP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.68075
positive regulation of humoral immune response	GO Biological Process Annotations 2015	1.0	null
regulation of acrosome reaction	GO Biological Process Annotations 2015	1.0	null
pancreatic cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.060781
HCC193	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19494
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_60_AR	Rummagene Transcription Factor Associations 2026	1.0	null
acrosomal vesicle exocytosis	GO Biological Process Annotations 2015	1.0	null
NKX6-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.2619
parathyroid gland	HPA Tissue Protein Expression Profiles	1.0	1.10751
Large latent transforming growth factor-beta complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.566
MYC-19829295-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE146982_7_v_5_gpd1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
SKNBE2	CCLE Cell Line Gene CNV Profiles	-1.0	-1.59731
FOS_MCF 10A_hg19_2	ENCODE Transcription Factor Binding Site Profiles	1.0	null
positive regulation of protein modification process	GO Biological Process Annotations 2015	1.0	null
integral component of membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
regulation of cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
ZR7530	CCLE Cell Line Gene CNV Profiles	1.0	1.45081
CDX2-21074721-CACO-2-MOUSE	ChEA Transcription Factor Targets 2022	1.0	null
mice	GeneRIF Biological Term Annotations	1.0	null
Damo	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.072
Ovary epithelium cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.844
NFYA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8425
Tcf21	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	35.2529
positive regulation of T cell activation	GO Biological Process Annotations 2023	1.0	null
GSE261563_7_v_1_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
EP300_GM12878_hg19_4	ENCODE Transcription Factor Binding Site Profiles	1.0	null
CB-24-AT90_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.310916
PK-45H	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.987864
GSE226249_0_v_8_pirfenidone_human	RummaGEO Drug Perturbation Signatures	-1.0	null
PMC8764619-mmc7.xlsx-supplementary_table_for_the_Ven-GSE131737_TFAP2B_target_genes_G_gallus_1347_TFAP2B	Rummagene Transcription Factor Associations 2026	1.0	null
496100364_TCx_possible Alzheimer's disease_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.00658
Female infertility due to zona pellucida defect	ClinVar Gene-Phenotype Associations 2025	1.0	null
HCC3153	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	2.40372
Pancreatic adenocarcinoma_PAAD_TCGA-YH-A8SY-01A-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Connective tissue disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.1
Head and Neck squamous cell carcinoma_HNSC_TCGA-BA-4074-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-2.20882
SNU-484	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.852967
Fertilization envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.896
hsa-miR-591	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
plant form	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.7595
Petal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.776
SRF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5167
HS294T	CCLE Cell Line Gene Expression Profiles	1.0	2.46781
YB-54-ET23_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.66337
A704	CCLE Cell Line Gene Expression Profiles	-1.0	-1.58576
UMRC6	CCLE Cell Line Gene Expression Profiles	1.0	1.4078
integral component of membrane	GO Cellular Component Annotations 2015	1.0	null
GSE174498,GSE174500_2_v_1_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
regulation of phosphorus metabolic process	GO Biological Process Annotations 2015	1.0	null
SNU324	CCLE Cell Line Gene CNV Profiles	1.0	1.33762
tobacco use disorder	GAD Gene-Disease Associations	1.0	null
FD-59-TC81_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.629838
hsa-miR-617	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.07142
MDST8	CCLE Cell Line Gene Expression Profiles	1.0	2.55361
OVKATE	CCLE Cell Line Gene CNV Profiles	1.0	1.57532
JHH6	CCLE Cell Line Gene CNV Profiles	1.0	1.56983
XE-69-AT35_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.45278
Diphtheria	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.122
GE-98-ZI68_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.94496
Nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.673
posterior (caudal) superior temporal cortex (area 22c)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.927999
hippocampus (hippocampal formation)_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0554
positive regulation of protein kinase activity	GO Biological Process Annotations 2015	1.0	null
Lung squamous cell carcinoma_LUSC_TCGA-22-5480-01A-01R-1635-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HuCCT1	GDSC Cell Line Gene Expression Profiles	-1.0	-1.4847
GSE216413_1_v_0_gata3_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Vitelline envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.724
intracellular membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.609086
intracellular organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.577164
KRAS.300_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
MA-25-RP17_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.334417
YY1-22570637-MALME-3M-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Urinary system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.057
intracellular	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.644001
cytoplasm	LOCATE Curated Protein Localization Annotations	1.0	null
ventrolateral prefrontal cortex_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.888689
46 XX gonadal dysgenesis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.719
inflorescence	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.70968
hsa-miR-1292	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
egg coat	GO Cellular Component Annotations 2025	1.0	null
positive regulation of acrosome reaction	GO Biological Process Annotations 2015	1.0	null
HOXA6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.7473
Germ cell cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.354
soft tissue	HPA Tissue Protein Expression Profiles	-1.0	-1.57517
extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
Salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
NCIH1105	CCLE Cell Line Gene CNV Profiles	-1.0	-1.38048
Corneal epithelial cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.951
H3K4me1_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-EJ-5509-01A-01R-1580-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE128634,GSE128636_1_v_3_foxo1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF85	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.0
PGAM1	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	2.91853
TP63	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.3859
primary visual cortex (striate cortex, area V1/17)_37 yrs_M_12303	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.37315
biological_process	GO Biological Process Annotations 2015	1.0	null
Vaginal mucosa	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.563
Disease of mental health	DISEASES Experimental Gene-Disease Association Evidence Scores 2025	1.0	1.341
ZBTB32	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.0475
NFYB-21822215-K562-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Egg yolk	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.516
filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.879512
TE-4	COSMIC Cell Line Gene Mutation Profiles	1.0	null
negative regulation of multi-organism process	GO Biological Process Annotations 2015	1.0	null
extracellular region	LOCATE Curated Protein Localization Annotations	1.0	null
KRAS.600_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
Anovulation	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.495
GSE247230_0_v_1_anp32b_human	RummaGEO Gene Perturbation Signatures	1.0	null
regulation of localization	GO Biological Process Annotations 2015	1.0	null
regulation of homotypic cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-HC-7231-01A-11R-2118-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Blastocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.027
MDA-MB-468	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893908
HOXA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.0186
NR1I2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.1835
cerebellar cortex_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.01215
primary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.194594
WC-33-YP46_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.594231
ZNF76	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.8957
intrinsic component of membrane	GO Cellular Component Annotations 2015	1.0	null
animal	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30253
OVKATE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.30462
proteinaceous extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
PMC5352183-oncotarget-08-624-s009.xlsx-Table_S20-1_indicates_that_the_gene_is_both_a_TP53-MW_and_a_TP53-MSN_gene_in_the_correponding_cancer_and_0_indicates_not_TP53	Rummagene Transcription Factor Associations 2026	1.0	null
CAL148	CCLE Cell Line Gene CNV Profiles	1.0	1.56654
WM88	CCLE Cell Line Gene CNV Profiles	1.0	1.33716
FIGLA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.8128
retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.318999
SN12C	COSMIC Cell Line Gene Mutation Profiles	1.0	null
KM12	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FOXJ2::ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.667
uterine cervix	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.099624
PHF8-20622853-HELA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
gonad	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.232317
Vegetative stage	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.528
Germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.949
PMC12616242-can-24-3452_supplementary_table_s2_suppst2.xlsx-Up_bins-Up_bins_gaining_H3K27me3_in_hpMSC-EWSR1_FLI1_FLI1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE174498,GSE174500_0_v_1_asparaginase_human	RummaGEO Drug Perturbation Signatures	1.0	null
H3K9me3_HeLa-S3_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
PRDM1	JASPAR Predicted Transcription Factor Targets	1.0	null
cerebellar cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.961936
ZNF75A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.396
immune	GAD High Level Gene-Disease Associations	1.0	0.293278
Sto	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.709
RFX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.266
regulation of lymphocyte activation	GO Biological Process Annotations 2015	1.0	null
Head and Neck squamous cell carcinoma_HNSC_TCGA-CX-A4AQ-01A-11R-A24Z-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cytoplasmic vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.08323
intracellular signal transduction	GO Biological Process Annotations 2015	1.0	null
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A7OL-01A-11R-A33R-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
DOT1L	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.55636
inferolateral temporal cortex (area TEv, area 20)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.30454
Polycystic ovary syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.854
PCM6	CCLE Cell Line Gene Expression Profiles	1.0	1.59592
GSE81796_0_v_1_enzalutamide_human	RummaGEO Drug Perturbation Signatures	1.0	null
germ cell nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.410259
MEWO	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Periglomerular cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.523
PMC7498599-41467_2020_18508_MOESM11_ESM.xlsx-ICM_JUN-Unnamed_1_JUN	Rummagene Transcription Factor Associations 2026	1.0	null
establishment of localization in cell	GO Biological Process Annotations 2015	1.0	null
lipid storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.059216
cellular process	GO Biological Process Annotations 2015	1.0	null
regulation of secretion by cell	GO Biological Process Annotations 2015	1.0	null
GSE126463_4_v_2_pomalidomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
MYF5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.7122
SK-N-FI	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.26892
glaucoma, open-angle	GAD Gene-Disease Associations	1.0	null
negative regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2015	1.0	null
membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
MSANTD3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.743
SUM 149PT	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.4393
Skin Cutaneous Melanoma_SKCM_TCGA-D3-A1QB-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LP1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.36214
Usher syndrome type 3	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.183
Eb	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.814
SNU81	CCLE Cell Line Gene Expression Profiles	-1.0	-2.7544
Ovarian dysgenesis 2	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.726
EFO-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
IKZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.5482
Central nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.449
KMM1	CCLE Cell Line Gene Expression Profiles	1.0	1.48992
zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.129725
egg	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.102755
H513	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HCC1428	COSMIC Cell Line Gene Mutation Profiles	1.0	null
primary bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.335046
protein kinase a signaling	GO Biological Process Annotations 2015	1.0	null
NR3C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5049
SNU-475	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.52
PC-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28165
NEUROG2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.2616
ETV1-20927104-GIST48-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SK-MES-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892636
BACH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9845
ZNF189	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.2745
morula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.123298
Bullous keratopathy	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.176
ZFP57	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8943
Disease of mental health	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.129
ZNF143	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.3282
gametocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.19709
Blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.904
ZNF549	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9718
skin	GTEx Tissue Gene Expression Profiles	1.0	0.953715
Prostate adenocarcinoma_PRAD_TCGA-KK-A8I6-01A-11R-A36G-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE206729_4_v_1_trps1_human	RummaGEO Gene Perturbation Signatures	1.0	null
G112	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06476
Lung squamous cell carcinoma_LUSC_TCGA-90-7767-01A-11R-2125-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
positive regulation of t cell proliferation	GO Biological Process Annotations 2015	1.0	null
Female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
membrane part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.098109
LASV_FML29 _4hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.28318
ELF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	49.5443
GSE171572_0_v_2_tp53_human	RummaGEO Gene Perturbation Signatures	1.0	null
primary visual cortex (striate cortex, area V1/17)_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.02278
SIX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8922
regulation of leukocyte activation	GO Biological Process Annotations 2015	1.0	null
reactions	GeneRIF Biological Term Annotations	1.0	null
regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2015	1.0	null
HCC1897	CCLE Cell Line Gene Expression Profiles	-1.0	-1.95895
negative regulation of reproductive process	GO Biological Process Annotations 2025	1.0	null
A673	CCLE Cell Line Gene CNV Profiles	-1.0	-1.98929
primary auditory cortex (core)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.969247
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SN-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
endocrine gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.07044
ED-91-LY45_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.09605
PMC12000322-41419_2025_7601_MOESM9_ESM.xlsx-H3122-AR_somatic_filtered_PASS-Unnamed_47_AR	Rummagene Transcription Factor Associations 2026	1.0	null
STAT3_MCF 10A_hg19_3	ENCODE Transcription Factor Binding Site Profiles	1.0	null
LN-18	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855454
ZKSCAN5	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.9047
Te	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.61
Sensory system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.476
Inflorescence meristem	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.099
dorsal thalamus_9 pcw_M_12833	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.15152
membrane part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.285507
portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.901573
extracellular region part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.045924
GSE128730_3_v_6_neratinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Tectum	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.769
EWSR1-FLI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	188.781
GSE223241_2_v_3_cdkn2a_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-PR-A5PF-01A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
positive regulation of cellular protein metabolic process	GO Biological Process Annotations 2015	1.0	null
SU-DHL-4	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.2681
Meiotic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.245
Cuboid bone	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.585
APOBEC3F	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	1.0	3.12656
stamen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.868529
positive regulation of exocytosis	GO Biological Process Annotations 2015	1.0	null
TE-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
WA-15-KX40_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.453713
Viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.274
Growth hormone receptor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.507
transgenic	GeneRIF Biological Term Annotations	1.0	null
motility	GeneRIF Biological Term Annotations	1.0	null
hsa-miR-578	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
Pituitary gonadotropin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.607
496100401_FWM_probable Alzheimer's disease_TBI_88_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	5.16711
primary visual cortex (striate cortex, area V1/17)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.94929
Thoracic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.203
regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
SMAD4-21741376-EPCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
rabies	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.659611
blastocyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.774834
KNS60	DepMap CRISPR Gene Dependency	1.0	2.545
CB-32-EI69_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.374744
PPARD-21283829-MYOFIBROBLAST-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
hsa-miR-1324	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
PMC8423434-mmc7.xlsx-SOX2_HENSM-Genes_n_2733_SOX2	Rummagene Transcription Factor Associations 2026	1.0	null
DUX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.5041
blastula	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.547326
GSE261563_5_v_1_atrx_human	RummaGEO Gene Perturbation Signatures	-1.0	null
ZNF675	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.7856
VAX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1446
mRNA cleavage and polyadenylation specificity factor complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.628
TBX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.7789
AN3-CA	COSMIC Cell Line Gene Mutation Profiles	1.0	null
UF-14-LK87_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.305584
sperm part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.128425
Retinal ischemia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.019
TRIM28-17542650-NTERA2-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
SW900	COSMIC Cell Line Gene Mutation Profiles	1.0	null
TBXT	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	81.8088
secondary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.198056
Carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.187
Multicellular trichome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.553
membrane	GO Cellular Component Annotations 2015	1.0	null
IKZF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	69.9156
Overnutrition	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.114
H3K27me3_Brain Anterior Caudate	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
PMC11419236-media-2.pdf-38-TSC22D1_1_TSC22D1	Rummagene Transcription Factor Associations 2026	1.0	null
TRIM28-17542650-NTERA2-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
EPLC272H	CCLE Cell Line Gene Expression Profiles	1.0	1.72851
Disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.299
TGIF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.294
hsa-miR-149	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
EMC complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.675
GABPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	38.2797
enzyme binding	GO Molecular Function Annotations 2015	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12960	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.829558
NCI-H1355	GDSC Cell Line Gene Expression Profiles	1.0	1.87232
GATA1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.7681
TE-11	GDSC Cell Line Gene Expression Profiles	1.0	1.63249
GSE175787_13_v_7_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
germinal vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.417294
Uterine horn	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.771
Cataract 1 multiple types	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.935
ZB-16-BR73_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.40664
HCC1419	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.12977
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
hsa-miR-4756-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
Pheochromocytoma and Paraganglioma_PCPG_TCGA-QR-A6GZ-05A-11R-A35K-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
localization	GO Biological Process Annotations 2015	1.0	null
Allantois	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.55
E2F1	JASPAR Predicted Transcription Factor Targets	1.0	null
induces	GeneRIF Biological Term Annotations	1.0	null
GSE202434,GSE202438_15_v_1_talazoparib_human	RummaGEO Drug Perturbation Signatures	1.0	null
cellular_component	LOCATE Predicted Protein Localization Annotations	1.0	null
FEZF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.2679
Rectum adenocarcinoma_READ_TCGA-DC-6155-01A-11R-1660-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K9me3_T-cell acute lymphoblastic leukemia_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
binding	GO Molecular Function Annotations 2015	1.0	null
posteroventral (inferior) parietal cortex_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.880592
SOX2-21211035-LN229_GBM-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
GSE160817_2_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
HNF4A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	65.018
intrinsic component of membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.117364
SF-9 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.307
NCI-H1666	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.5831
KMS21BM	CCLE Cell Line Gene CNV Profiles	1.0	1.38196
Egg chorion	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.61
POU6F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.8086
PMC10247733-41408_2023_863_MOESM2_ESM.pdf-581-ZNF878_ZNF878	Rummagene Transcription Factor Associations 2026	1.0	null
Endometriosis_Endometrium_GSE7305	GEO Signatures of Differentially Expressed Genes for Diseases	-1.0	-1.51391
reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.77983
YKG-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Synaptonemal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.448
COLO-792	COSMIC Cell Line Gene Mutation Profiles	1.0	null
gamete	GeneRIF Biological Term Annotations	1.0	null
extracellular region	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.722134
NCI-H345	COSMIC Cell Line Gene Mutation Profiles	1.0	null
ZNF382	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.0113
inferolateral temporal cortex (area TEv, area 20)_30 yrs_F_12290	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.05954
regulation of secretion	GO Biological Process Annotations 2015	1.0	null
PMC12186250-NIHMS2085662-supplement-3.xlsx-4111_TEAD4_peaks-Nearest_Ensembl_TEAD4	Rummagene Transcription Factor Associations 2026	1.0	null
establishment of localization	GO Biological Process Annotations 2015	1.0	null
GSE120612_4_v_5_etoposide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZBTB18	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.6736
Vesicle	COMPARTMENTS Experimental Protein Localization Evidence Scores 2025	1.0	1.774
regulation of humoral immune response	GO Biological Process Annotations 2025	1.0	null
Mitral cell layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.534
hsa-miR-4763-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Dentate gyrus mossy fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.546
Perisynaptic space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.89
ES5	DepMap CRISPR Gene Dependency	1.0	3.52621
GSE135030_11_v_7_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
organelle part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.042563
GSE213588_9_v_11_trametinib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
breast	HPA Tissue Protein Expression Profiles	-1.0	-1.00813
immune	GeneRIF Biological Term Annotations	1.0	null
Endostyle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.97
RUNX2	JASPAR Predicted Transcription Factor Targets	1.0	null
DB-40-HA40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.333961
Lassa Fever Virus_24hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	1.8849
DU4475	CCLE Cell Line Gene CNV Profiles	1.0	1.82622
H3K27ac_mammary epithelial cell_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
SCH	COSMIC Cell Line Gene Mutation Profiles	1.0	null
A-375	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976065
HT55	GDSC Cell Line Gene Expression Profiles	1.0	1.50037
Ovarian disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.032
ZB-72-PE17_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.44864
PRC2_EDD_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	-1.0	null
Diabetes mellitus	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.413
cell periphery	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Integrin alphav-beta1 complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.581
Flagellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.094
NCI-H2804	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.35687
single organism reproductive process	GO Biological Process Annotations 2015	1.0	null
NB13	DepMap CRISPR Gene Dependency	1.0	2.98555
NCI-H2342	COSMIC Cell Line Gene Mutation Profiles	1.0	null
VMRCRCW	DepMap CRISPR Gene Dependency	1.0	2.10761
GSE193900,GSE193905_1_v_0_pura_human	RummaGEO Gene Perturbation Signatures	-1.0	null
DMS-273	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Multiple Sclerosis	HuGE Navigator Gene-Phenotype Associations	1.0	null
GSE140937,GSE140938_0_v_2_slfn11_human	RummaGEO Gene Perturbation Signatures	-1.0	null
CEBPA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.6042
Corneal edema	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.382
ZBTB24	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	55.5338
sperm-egg recognition	GO Biological Process Annotations 2025	1.0	null
regulation of binding of sperm to zona pellucida	GO Biological Process Annotations 2023	1.0	null
PMC11949941-DataSheet1.pdf-48-MESP1_MESP1	Rummagene Transcription Factor Associations 2026	1.0	null
Prostate adenocarcinoma_PRAD_TCGA-G9-6385-01A-11R-1789-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF331	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.5898
Cervical squamous cell carcinoma and endocervical adenocarcinoma_CESC_TCGA-C5-A2LX-01A-11R-A18M-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Embryonic germ cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.604
HOXD8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.7169
Zona pellucida domain, conserved site	InterPro Predicted Protein Domain Annotations	1.0	null
positive regulation of T cell proliferation	GO Biological Process Annotations 2025	1.0	null
ZNF680	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.5208
CAOV4	DepMap CRISPR Gene Dependency	1.0	4.78325
gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Perinuclear theca	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.959
Exine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.605
23132-87	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MGA	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.0331
NCI-H187	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.33705
Portio vaginalis cervicis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
ZNF214	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6596
acrosin binding	GO Molecular Function Annotations 2025	1.0	null
extracellular region	GO Cellular Component Annotations 2015	1.0	null
OVCA420	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Calyx	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.821
BEN	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Insulinoma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.643
membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.580504
Primary immunodeficiency disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.21
EP300	ENCODE Transcription Factor Targets	1.0	null
Eggshell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.213
TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.887
stomach cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.227988
GSE226285_3_v_0_glutathione_human	RummaGEO Drug Perturbation Signatures	1.0	null
KU-19-19	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MAF	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.8418
GSE160817_5_v_8_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Autosomal dominant disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.106
eye disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.225573
COV413A	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.895737
EKVX	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-3.30859
Zona pellucida domain	InterPro Predicted Protein Domain Annotations	1.0	null
CAOV-4	COSMIC Cell Line Gene CNV Profiles	1.0	2.12439
A-Vietnam-1203_CIP048_RG3-2004(H5N1)mutPB2-627E_0Hour_None_GSE43203	GEO Signatures of Differentially Expressed Genes for Viral Infections	1.0	0.765998
viral infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.051465
H3K27ac_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
DOV13	DepMap CRISPR Gene Dependency	1.0	2.08014
ZKSCAN3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	68.9714
Skin Cutaneous Melanoma_SKCM_TCGA-ER-A19P-06A-11R-A18S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LCLC-97TM1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
OAW28	CCLE Cell Line Gene CNV Profiles	1.0	1.51585
multicellular organism reproduction	GO Biological Process Annotations 2015	1.0	null
Physical disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.058
TCF4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	52.7113
Siphon	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.57
Ampulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.289
collagen-containing extracellular matrix	GO Cellular Component Annotations 2023	1.0	null
binding of sperm to zona pellucida	GO Biological Process Annotations 2025	1.0	null
RBPJ-21746931-IB4-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
Autosomal genetic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.386
PMC12358249-supplementary_table_s5_ioaf064.xlsx-DMRT1_-_vs_WT__4_months-Unnamed_1_DMRT1	Rummagene Transcription Factor Associations 2026	1.0	null
semen	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.1379
Inhibin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.883
AB-66-IL06_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.777236
brain	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.052801
S0-EE-Y6Y9_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.222479
GSC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	13.4887
SOX2-21211035-LN229-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZIM3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.1942
plasma membrane	GO Cellular Component Annotations 2015	1.0	null
RC-K8	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SCRT2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.1017
JUN	ChEA Transcription Factor Targets	1.0	null
RPMI 8226	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.892636
Head and Neck squamous cell carcinoma_HNSC_TCGA-IQ-A61I-01A-11R-A30B-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
HSF2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.4983
regulation of immune response	GO Biological Process Annotations 2015	1.0	null
STAT3	MotifMap Predicted Transcription Factor Targets	1.0	null
ED-91-LY45_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.660214
YY1	JASPAR Predicted Transcription Factor Targets	1.0	null
tetanus	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.218374
H4 neuroglioma cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.764
PAX8	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.5922
GSE160817_2_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
GATA1	ChEA Transcription Factor Targets	1.0	null
positive regulation of cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
Megagametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.859
OD-07-NJ52_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.385485
H3K27me3_Brain Substantia Nigra	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
Sperm flagellum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.554
TMD8	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-2.02231
ABL1_knockdown_100_GSE27869	GEO Signatures of Differentially Expressed Genes for Kinase Perturbations	-1.0	-2.61656
HOXB4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.9944
KPNYN	DepMap CRISPR Gene Dependency	1.0	6.168
GSE240344_1_v_0_uxs1_human	RummaGEO Gene Perturbation Signatures	1.0	null
female reproductive system	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Gametophyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.848
Bhlha15	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.353
SW156	COSMIC Cell Line Gene Mutation Profiles	1.0	null
MCC13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
SW403	DepMap CRISPR Gene Dependency	1.0	7.91433
THOC2	CM4AI KOLF21J CRISPRi Gene Perturbation Atlas	-1.0	-2.11415
Egg	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.673
Male infertility due to globozoospermia	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.124
Plant ovule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.855
TBX15	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	56.5583
PMC10011543-41419_2023_5707_MOESM4_ESM.xlsx-genes_with_unique_SNP-F5-Thygro-r__CIC-2n_h-r_CIC	Rummagene Transcription Factor Associations 2026	1.0	null
HCC70	GDSC Cell Line Gene Expression Profiles	1.0	1.67367
Cyanelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.714
T84	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.95408
Germ cell_Ovary_Human	CellMarker Gene-Cell Type Associations	1.0	null
exposure	GeneRIF Biological Term Annotations	1.0	null
culture medium	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.351114
NCI-H1573	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Glomerular layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.05
plasma membrane	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
cellular_component	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.953528
Olig2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8375
female reproductive gland	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
SF172	CCLE Cell Line Gene Expression Profiles	1.0	1.65268
posteroventral (inferior) parietal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	3.15549
BT483	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.738673
regulation of T cell proliferation	GO Biological Process Annotations 2025	1.0	null
Sensory dendrite	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.818
MYC_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
Protein body	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.518
hippocampus (hippocampal formation)_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.837899
QGP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.01138
animal	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Rhizophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.556
Teratoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.126
NCIH716	DepMap CRISPR Gene Dependency	1.0	2.16283
GSE160817_2_v_8_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Ovarian dysfunction	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.087
U266B1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10748
GSE161846,GSE161849_1_v_5_smarca4_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Endocrine gland	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
NCI-H2227	COSMIC Cell Line Gene Mutation Profiles	1.0	null
regulation of leukocyte proliferation	GO Biological Process Annotations 2015	1.0	null
Ovarian cyst	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.647
Germinal vesicle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.365
SNU719	CCLE Cell Line Gene Expression Profiles	-1.0	-1.7244
posterior (caudal) superior temporal cortex (area 22c)_13 yrs_F_12831	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.57266
tissues, cell types and enzyme sources	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.30973
Sporangiophore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.743
NCIH2196	CCLE Cell Line Gene CNV Profiles	-1.0	-1.37663
Glucosidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.599
Rectum adenocarcinoma_READ_TCGA-EI-6514-01A-11R-1736-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PITX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.1928
CH157MN	CCLE Cell Line Gene CNV Profiles	-1.0	-1.41288
AMO1	CCLE Cell Line Gene CNV Profiles	-1.0	-1.69957
Ovarian surface epithelial cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.912
cell part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.756799
hsa-miR-211	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.55165
viscus	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.337072
TCF12	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.9348
NCI-H446	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HS571T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.85733
GSE160817_5_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Kidney renal papillary cell carcinoma_KIRP_TCGA-SX-A7SO-01A-11R-A355-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
somatic cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.713779
496100392_HIP_dementia_TBI_90-94_F	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	3.02483
Ascl2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	55.2069
digestive gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.284962
HOXB2::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.7004
HUP-T3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.968468
GSE135030_11_v_2_fludarabine_human	RummaGEO Drug Perturbation Signatures	-1.0	null
CUX1-19635798-MULTIPLE-CANCER-TYPES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE111247_11_v_10_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
NCI-H2347	COSMIC Cell Line Gene Mutation Profiles	1.0	null
cell part	LOCATE Curated Protein Localization Annotations	1.0	null
Kidney renal clear cell carcinoma_KIRC_TCGA-BP-4770-01A-01R-1503-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
ZNF708	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.1967
intracellular part	LOCATE Curated Protein Localization Annotations	1.0	null
negative regulation of biological process	GO Biological Process Annotations 2015	1.0	null
NCIH524	CCLE Cell Line Gene Expression Profiles	-1.0	-1.95645
IGROV-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
HS255T	CCLE Cell Line Gene Expression Profiles	-1.0	-1.63874
RFX4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7644
vagina	HPA Tissue Protein Expression Profiles	-1.0	-1.57517
GSE146687_2_v_5_eribulin_human	RummaGEO Drug Perturbation Signatures	1.0	null
Monogenic disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.474
A375	COSMIC Cell Line Gene CNV Profiles	1.0	2.12439
hsa-miR-30b	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
Flagellate	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.055
WC-33-YP46_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.596548
ZSCAN31	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.047
FOXO1::ELK1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	46.1442
biological regulation	GO Biological Process Annotations 2015	1.0	null
Female reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.974
Immature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.62
D-566MG	COSMIC Cell Line Gene Mutation Profiles	1.0	null
E2F4_MCF 10A_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
egg coat	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.59026
YH-13	COSMIC Cell Line Gene Mutation Profiles	1.0	null
FURIN	Pathway Commons Protein-Protein Interactions	1.0	null
Meiotic spindle	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.605
ZFP42	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	29.7991
Retinitis pigmentosa	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.146
SMN complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.768
hsa-miR-4776-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
whole body	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
zona pellucida	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.878666
cytoplasmic part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.628187
EBF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8908
NCI-H1876	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Septum pellucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.895
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A6R0-01A-12R-A32P-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
brain ventricle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.149617
PMC8519939-41525_2021_248_MOESM5_ESM.xlsx-ATF2_S_UP_V1_DN-Ensemble_gene_ID_ATF2	Rummagene Transcription Factor Associations 2026	1.0	null
YMB-1-E	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.84069
sf-21 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.247239
YY1	ChEA Transcription Factor Targets	1.0	null
GSE111247_11_v_3_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
GSE160817_3_v_1_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
Genetic Predisposition to Disease	HuGE Navigator Gene-Phenotype Associations	1.0	null
TGIF2LY	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1248
posterior (caudal) superior temporal cortex (area 22c)_16 pcw_M_12879	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.12475
ZNF75D	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	37.5846
hsa-miR-4755-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.7397
anterior (rostral) cingulate (medial prefrontal) cortex_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.36817
Cauline leaf	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.922
Perivitelline space	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.558
inherited metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041422
Retinal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.065
hsa-miR-4471	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
Brain Lower Grade Glioma_LGG_TCGA-HT-7687-01A-11R-2256-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.507
ND-15-RC31_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.691621
MKN-45	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.71961
Corolla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.256
Germ cell nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.332
FERD3L	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	66.3625
positive regulation of protein metabolic process	GO Biological Process Annotations 2015	1.0	null
Oviductal ampulla	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.171
hsa-miR-548b-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
Artery disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.148
TC32	CCLE Cell Line Gene CNV Profiles	1.0	1.42296
NFE2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	21.1454
primary motor cortex (area M1, area 4)_3 yrs_F_12836	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.08814
ZB-16-BR73_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.37205
NCI-H1623	COSMIC Cell Line Gene Mutation Profiles	1.0	null
embryonic structure	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.03127
Nr1h3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	21.0826
cell part	GO Cellular Component Annotations 2015	1.0	null
proteinaceous extracellular matrix	GO Cellular Component Annotations 2015	1.0	null
alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.733
MYOD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.3436
regulation of molecular function	GO Biological Process Annotations 2015	1.0	null
regulation of protein modification process	GO Biological Process Annotations 2015	1.0	null
Corpus luteum	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.128
negative regulation of cellular process	GO Biological Process Annotations 2015	1.0	null
nervous system	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.05192
OAW28	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.67311
HEY1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.8655
Nauplius	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.609
esophagus	HPA Tissue Protein Expression Profiles	-1.0	-1.57517
ETV5::HOXA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.1047
Chorion	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.46
chemdependency	GAD High Level Gene-Disease Associations	1.0	0.293278
chr11_60940424_C_G_b38	GTEx eQTL 2025	1.0	1.00036
GSE224294_3_v_2_ngly1_human	RummaGEO Gene Perturbation Signatures	1.0	null
BARHL1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	28.9262
primary visual cortex (striate cortex, area V1/17)_36 yrs_M_12302	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.1258
OCI-AML3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
NCIH3255	CCLE Cell Line Gene Expression Profiles	-1.0	-2.24109
HT-115	COSMIC Cell Line Gene Mutation Profiles	1.0	null
regulation of catalytic activity	GO Biological Process Annotations 2015	1.0	null
mediodorsal nucleus of thalamus_40 yrs_F_12304	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.97788
NCI-H838	GDSC Cell Line Gene Expression Profiles	-1.0	-1.81096
GSE202434,GSE202438_12_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ETV5::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.817
positive regulation of cell proliferation	GO Biological Process Annotations 2015	1.0	null
MIA-PACA-2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Pollen wall	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.569
positive regulation of protein phosphorylation	GO Biological Process Annotations 2015	1.0	null
regulation of kinase activity	GO Biological Process Annotations 2015	1.0	null
Internal female genital organ	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.354
MDAMB453	CCLE Cell Line Gene CNV Profiles	1.0	1.58027
RUNX2	ChEA Transcription Factor Targets	1.0	null
nervous system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050617
regulation of humoral immune response	GO Biological Process Annotations 2023	1.0	null
Autosomal recessive disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.086
GFI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	50.6164
positive regulation of cell adhesion	GO Biological Process Annotations 2015	1.0	null
Glaucoma, Open-Angle	HuGE Navigator Gene-Phenotype Associations	1.0	null
DA-85-SU90_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.489898
insulin resistance	GAD Gene-Disease Associations	1.0	null
PE-82-OK78_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.563208
collagen-containing extracellular matrix	GO Cellular Component Annotations 2025	1.0	null
NCI-H1155	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5JA-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
GSE160817_3_v_6_slamf6_human	RummaGEO Gene Perturbation Signatures	1.0	null
CRO-AP2	COSMIC Cell Line Gene Mutation Profiles	1.0	null
POU1F1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	59.0119
positive regulation of response to stimulus	GO Biological Process Annotations 2015	1.0	null
ZNF528	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	47.4935
regulation of protein metabolic process	GO Biological Process Annotations 2015	1.0	null
positive regulation of secretion	GO Biological Process Annotations 2015	1.0	null
positive regulation of transport	GO Biological Process Annotations 2015	1.0	null
NCI-H2170	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.976065
TBX20	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9832
ATP-binding cassette (ABC) transporter complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.878
amygdaloid complex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.28883
sperm-egg recognition	GO Biological Process Annotations 2015	1.0	null
ZR-75-30	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.6502
GE-11 cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.865
Kidney Chromophobe_KICH_TCGA-KO-8409-01A-11R-2315-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A3F3-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
MM1S	DepMap CRISPR Gene Dependency	1.0	4.49601
Non-alcoholic fatty liver disease histology (AST)	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.569897
Pheochromocytoma and Paraganglioma_PCPG_TCGA-SR-A6MY-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
hsa-miR-3685	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
voltage-gated calcium channel complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.14
CAOV4	CCLE Cell Line Gene CNV Profiles	1.0	3.2803
orbital frontal cortex_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.25829
calcium ion-dependent exocytosis	GO Biological Process Annotations 2015	1.0	null
septum pellucidum	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.721166
ERF::NHLH1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	77.2703
EGR1-20690147-ERYTHROLEUKEMIA-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
spermatozoon	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.09606
Amyloplast	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.547
NR2C1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	20.025
HCC1599	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.2344
seminal vesicle	HPA Tissue Protein Expression Profiles	1.0	1.10751
cellular_component	LOCATE Curated Protein Localization Annotations	1.0	null
FADU	COSMIC Cell Line Gene Mutation Profiles	1.0	null
GATA2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4379
9+2 motile cilium	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.201
BNC2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	16.4841
positive regulation of humoral immune response	GO Biological Process Annotations 2025	1.0	null
LU-65	GDSC Cell Line Gene Expression Profiles	1.0	1.67117
HC-04-ZM18_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.646761
GSE128634,GSE128636_1_v_5_foxo1_human	RummaGEO Gene Perturbation Signatures	-1.0	null
JAR	COSMIC Cell Line Gene Mutation Profiles	1.0	null
single-organism cellular process	GO Biological Process Annotations 2015	1.0	null
exocytosis	GO Biological Process Annotations 2015	1.0	null
Sarcoma_SARC_TCGA-SI-A71Q-01A-12R-A33J-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
EHEB	CCLE Cell Line Gene Expression Profiles	1.0	1.92567
primary visual cortex (striate cortex, area V1/17)_15 yrs_M_12299	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.925353
Head and Neck squamous cell carcinoma_HNSC_TCGA-CQ-5326-01A-01R-1873-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
COV318	DepMap CRISPR Gene Dependency	1.0	2.1438
Lung squamous cell carcinoma_LUSC_TCGA-58-8388-01A-11R-2326-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
KPNSI9S	CCLE Cell Line Gene CNV Profiles	1.0	1.66377
disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.622967
kinase	GeneRIF Biological Term Annotations	1.0	null
TFAP2A	JASPAR Predicted Transcription Factor Targets	1.0	null
positive regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
Lung adenocarcinoma_LUAD_TCGA-91-6848-01A-11R-1949-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
NKX2-2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.3835
Glucose metabolism disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.433
GSE214931_4_v_5_temozolomide_human	RummaGEO Drug Perturbation Signatures	-1.0	null
TAL1::TCF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5909
single-organism process	GO Biological Process Annotations 2015	1.0	null
NCI-H1299	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.19494
GSE221327_1_v_2_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
Syndrome	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.366
QF-00-NO42_0.01uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.642546
secretion by cell	GO Biological Process Annotations 2015	1.0	null
AU565	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.646004
Skin Cutaneous Melanoma_SKCM_TCGA-EB-A57M-01A-51R-A311-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
JD-62-TK68_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.226773
Ovary epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.122
Pou5f1::Sox2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	32.6756
Floral primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.153
NKX2-3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.5648
HGC-27	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Trichome	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.933
NCI-H1417	COSMIC Cell Line Gene Mutation Profiles	1.0	null
M14	COSMIC Cell Line Gene Mutation Profiles	1.0	null
negative regulation of cellular process	GO Biological Process Annotations 2025	1.0	null
Ikzf3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.3855
Root hair	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.32
Primary ovarian insufficiency	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.365
Swim bladder	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.796
GSE171837_1_v_2_bortezomib_human	RummaGEO Drug Perturbation Signatures	1.0	null
JIYOYE	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02545
Atrophy of prostate	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.035
KINGS1	DepMap CRISPR Gene Dependency	1.0	4.11073
PMC4149371-pone.0105180.s010.xls-NANOG-GENE_NANOG	Rummagene Transcription Factor Associations 2026	1.0	null
Cervicovaginal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.675
Secondary spermatocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.979
Pparg::Rxra	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	30.3646
inferolateral temporal cortex (area TEv, area 20)_12 pcw_F_13060	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.924005
sucrase-isomaltase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.6
Disease of anatomical entity	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.27
Presynaptic actin cytoskeleton	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.55
Sperm plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.08
Microspore	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.701
regulation of leukocyte cell-cell adhesion	GO Biological Process Annotations 2015	1.0	null
regulation of cell activation	GO Biological Process Annotations 2015	1.0	null
CREB1	JASPAR Predicted Transcription Factor Targets	1.0	null
open-angle glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.95369
negative regulation of reproductive process	GO Biological Process Annotations 2023	1.0	null
GSE126463_4_v_2_arid2_human	RummaGEO Gene Perturbation Signatures	1.0	null
support	GeneRIF Biological Term Annotations	1.0	null
Gastrointestinal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.276
Outer dense fiber	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.348
Uterine fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.719
SMN-Sm protein complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.766
HSF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.7458
acrosomal	GeneRIF Biological Term Annotations	1.0	null
MEIS3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	15.6778
LC-2-AD	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Hypertension	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.06
Head and Neck squamous cell carcinoma_HNSC_TCGA-BB-4228-01A-01R-1436-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
la92	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.156
NR1D1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.0602
PE/CA-PJ15	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DMS153	CCLE Cell Line Gene CNV Profiles	-1.0	-1.57973
TBR1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.7652
RUNX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	41.9828
regulation of cell adhesion	GO Biological Process Annotations 2015	1.0	null
G61	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.855454
KRAS.600.LUNG.BREAST_UP.V1	MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations	1.0	null
GSE146982_3_v_2_metformin_human	RummaGEO Drug Perturbation Signatures	1.0	null
HNF4G	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	25.0702
FD-59-TC81_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.06989
JHH6	CCLE Cell Line Gene Expression Profiles	-1.0	-1.55993
Zygote	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.937
IgA immunoglobulin complex, circulating	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.648
GSE202434,GSE202438_7_v_11_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
Breast cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.18
153br	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.996
NCI-H2135	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-548a-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.965816
Hyaline layer	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.885
positive regulation of phosphorylation	GO Biological Process Annotations 2015	1.0	null
Female germ cell nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.365
PMC12381255-41389_2025_576_MOESM2_ESM.xlsx-Progenitor_SRCAP-1879-Gene_SRCAP	Rummagene Transcription Factor Associations 2026	1.0	null
Response to ziprazidone in schizophrenia	GWAS Catalog SNP-Phenotype Associations 2025	1.0	0.552288
Auxin efflux carrier complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.569
Semen	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.707
YMB-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.33282
Fertilization	Reactome Pathways 2024	1.0	null
Elf5	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	24.6786
UACC-257	GDSC Cell Line Gene Expression Profiles	1.0	1.60386
Epididymal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.658
endocrine gland cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.046357
496100626_FWM_no dementia_TBI_86_M	Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles	1.0	2.39709
hsa-miR-4505	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.0155
ZNF770	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.4597
Nr2e3	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	16.913
striatum_13 pcw_F_12834	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.846954
Retinitis pigmentosa 11	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.188
Mature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.592
ZBTB26	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	53.1383
SW 1116	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.953324
Theca interna	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.338
zona	GeneRIF Biological Term Annotations	1.0	null
RUNX2-22187159-PCA-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
G-361	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37809
HCC2218	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.37001
tissues, cell types and enzyme sources	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Bacterial infectious disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.462
Filament	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.762
Urogenital system	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
cell culture	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.433757
DPRX	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.7709
PBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	36.0412
oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	2.11926
Oviductal fluid	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.507
MYC	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	30.6989
TBX3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	33.0428
THP-1	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	2.70587
NCI-H1882	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-0.85626
plant	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.55607
Lung adenocarcinoma_LUAD_TCGA-44-7660-01A-11R-2066-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
H3K4me1_keratinocyte_hg19_1	ENCODE Histone Modification Site Profiles	1.0	null
Pheochromocytoma and Paraganglioma_PCPG_TCGA-WB-A81R-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
FOXA1-21572438-LNCAP-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
specialized extracellular matrix	GO Cellular Component Annotations 2025	1.0	null
Prostate disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.116
NEUROD1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	23.617
hsa-miR-4450	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.13535
GSE238018_3_v_2_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GTL-16	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37809
Saos-2	GDSC Cell Line Gene Expression Profiles	-1.0	-2.76461
lung	HPA Tissue Protein Expression Profiles	1.0	1.10751
WC-33-YP46_0.1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	1.0259
H2AFZ_mammary epithelial cell_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
regulation of t cell activation	GO Biological Process Annotations 2015	1.0	null
Adrenocortical carcinoma_ACC_TCGA-OR-A5J8-01A-11R-A29S-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
LASV_FML29_24hr_24069471_GSE41300	GEO Signatures of Differentially Expressed Genes for Viral Infections	-1.0	-2.10207
hsa-miR-4257	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.99187
ttype	GeneRIF Biological Term Annotations	1.0	null
TFAP2B	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	159.712
orbital frontal cortex_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.956952
GSE128333_2_v_0_tcf4_human	RummaGEO Gene Perturbation Signatures	1.0	null
Seminal plasma	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.028
cell	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
FOS	ENCODE Transcription Factor Targets	1.0	null
Uterine Carcinosarcoma_UCS_TCGA-N8-A4PL-01A-11R-A28V-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
cell property	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.409351
ZR751	CCLE Cell Line Gene CNV Profiles	1.0	2.1803
organelle	COMPARTMENTS Experimental Protein Localization Evidence Scores	1.0	0.233497
LC4-1	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Ovary	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Epididymosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.709
GSE139016_0_v_1_disulfiram_human	RummaGEO Drug Perturbation Signatures	-1.0	null
oral mucosa	HPA Tissue Protein Expression Profiles	-1.0	-1.57517
GSE221327_1_v_9_clpp_human	RummaGEO Gene Perturbation Signatures	1.0	null
OSR2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.3192
ovary	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.63456
TP63-22573176-HFKS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
ZNF547	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	63.8146
TBL1-22424771-293T-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
GSE175787_8_v_10_rhoc_human	RummaGEO Gene Perturbation Signatures	1.0	null
Ripoptosome	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.059
Skin Cutaneous Melanoma_SKCM_TCGA-DA-A3F5-06A-11R-A20F-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
AM38	DepMap CRISPR Gene Dependency	1.0	2.0738
NHLH2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	62.6791
KYSE-70	COSMIC Cell Line Gene Mutation Profiles	1.0	null
axoneme part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.273367
Pollen tube	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.678
Male reproductive system	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	2.409
primary open angle glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	1.01385
Myosin X complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.725
TC138	DepMap CRISPR Gene Dependency	1.0	6.31807
FC-19-RM40_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.303325
GSE162892_3_v_0_sox9_human	RummaGEO Gene Perturbation Signatures	-1.0	null
Spermatogenic failure	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.133
SUM44PE	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-0.917154
vision	GAD High Level Gene-Disease Associations	1.0	0.293278
primary somatosensory cortex (area S1, areas 3,1,2)_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.42904
Plant primordium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.995
NFKB1-27076634-BEAS2B-HUMAN-LUNG-INFLAMMATION	ChEA Transcription Factor Targets 2022	1.0	null
NCI-H1437	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.893908
GSE214931_2_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
hsa-miR-4716-5p	TargetScan Predicted Nonconserved microRNA Targets	1.0	1.20993
SMARCA4	ChEA Transcription Factor Targets	1.0	null
EFM-19	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.06622
HOXB7-26014856-BT474-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
KYSE-270	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.28232
GSE131649_6_v_7_hemin_human	RummaGEO Drug Perturbation Signatures	-1.0	null
MDAMB468	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	-1.0	-1.71615
GSE155567_3_v_0_cd33_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sarcoma_SARC_TCGA-QQ-A5VC-01A-31R-A32Q-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Breast disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.198
Prostate adenocarcinoma_PRAD_TCGA-YL-A8SH-01B-11R-A37L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Leaf tip	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.595
EVX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.8993
Ovarian surface epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.112
Low tension glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.326
Mitochondrial inner membrane peptidase complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.162
TGBC24TKB	COSMIC Cell Line Gene Mutation Profiles	1.0	null
DMS114	CCLE Cell Line Gene Expression Profiles	1.0	1.3768
inferolateral temporal cortex (area TEv, area 20)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.931032
POLR2A	ENCODE Transcription Factor Targets	1.0	null
NCI-H1781	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.7713
regulation of immune system process	GO Biological Process Annotations 2015	1.0	null
RFX7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3516
IMR32	DepMap CRISPR Gene Dependency	1.0	2.26165
Heart disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.032
Olfactory nerve	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.846
Corneal staphyloma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.115
Secretory granule	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	2.372
acrosome	GeneRIF Biological Term Annotations	1.0	null
GSE214931_4_v_0_temozolomide_human	RummaGEO Drug Perturbation Signatures	1.0	null
presence	GeneRIF Biological Term Annotations	1.0	null
regulation of acrosome reaction	GO Biological Process Annotations 2025	1.0	null
NCIH1437	CCLE Cell Line Gene CNV Profiles	1.0	1.33093
SW837	CCLE Cell Line Gene Expression Profiles	-1.0	-1.45867
Chronic salpingitis	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.077
STAT3	ENCODE Transcription Factor Targets	1.0	null
positive regulation of calcium ion-dependent exocytosis	GO Biological Process Annotations 2015	1.0	null
PKNOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	40.0878
CHP-212	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10748
Pancreatic adenocarcinoma_PAAD_TCGA-HV-A5A6-01A-11R-A26U-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
Perturb_919_KD_eIF4A3_SRP261125	PerturbAtlas Signatures of Differentially Expressed Genes for Gene Perturbations	1.0	7.35734
CEBPD	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.8147
SK-N-AS	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10453
GSE168797_1_v_0_cannabidiol_human	RummaGEO Drug Perturbation Signatures	1.0	null
ZNF16	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	57.0372
SUZ12_H1-hESC_hg19_1	ENCODE Transcription Factor Binding Site Profiles	1.0	null
GSE135030_3_v_4_fludarabine_human	RummaGEO Drug Perturbation Signatures	1.0	null
DF-93-BT88_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	2.03679
inferolateral temporal cortex (area TEv, area 20)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	2.3435
cho cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.354455
SMAD3-21741376-ESCS-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
dorsolateral prefrontal cortex_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.11855
PMC6826333__F1	PFOCR Pathway Figure Associations 2023	1.0	null
Corneal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.147
PF-382	GDSC Cell Line Gene Expression Profiles	1.0	1.50395
LD-69-ZV56_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.383744
plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.350243
Intercellular bridge	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.819
NCI-H740	COSMIC Cell Line Gene Mutation Profiles	1.0	null
hsa-miR-1202	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.809003
GSE236486_1_v_0_arnt_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE113005_0_v_1_sorafenib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
mediodorsal nucleus of thalamus_8 yrs_M_12841	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-1.25991
ATF6	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	48.6353
LAMA-84	GDSC Cell Line Gene Expression Profiles	1.0	2.2752
E2F7	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.076
GSE238018_3_v_4_mxra8_human	RummaGEO Gene Perturbation Signatures	-1.0	null
GSE119345_2_v_3_bexarotene_human	RummaGEO Drug Perturbation Signatures	-1.0	null
SCL-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Binding Site Profiles	1.0	null
regulation of acrosome reaction	GO Biological Process Annotations 2023	1.0	null
posteroventral (inferior) parietal cortex_21 pcw_F_12365	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.40308
GSE221633_0_v_1_trim24_human	RummaGEO Gene Perturbation Signatures	1.0	null
Cell envelope Sec protein transport complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.53
SOX2-21211035-LN229-GBM	ChEA Transcription Factor Targets 2022	1.0	null
vitelline envelope	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	1.30604
GSE202434,GSE202438_12_v_0_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
ZKSCAN1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	18.5691
internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores	1.0	null
Cardiovascular system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.414
FOS::JUN	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	24.6308
MDA-MB-453	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.02283
Carbohydrate metabolic disorder	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.439
be11	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.539
regulation of humoral immune response	GO Biological Process Annotations 2015	1.0	null
Cell type cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.368
nasopharynx	HPA Tissue Protein Expression Profiles	1.0	1.10751
Cauda epididymis	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.98
Seminiferous tubule	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.322
pancreatic carcinoma	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.081194
Musculoskeletal system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.172
membrane-bounded organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.609086
hsa-miR-4722-3p	TargetScan Predicted Nonconserved microRNA Targets	1.0	0.843347
positive regulation of lymphocyte proliferation	GO Biological Process Annotations 2015	1.0	null
mediated	GeneRIF Biological Term Annotations	1.0	null
Internal female genital organ	TISSUES Curated Tissue Protein Expression Evidence Scores 2025	1.0	4.0
Polymeric IgA immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.669
positive regulation of humoral immune response	GO Biological Process Annotations 2023	1.0	null
PMC5497057-ncomms15921-s2.xlsx-AA_PCa_vs_EA_PCa-Unnamed_2_TEAD1	Rummagene Transcription Factor Associations 2026	1.0	null
GSE202434,GSE202438_7_v_14_talazoparib_human	RummaGEO Drug Perturbation Signatures	-1.0	null
HCC2218	CCLE Cell Line Gene CNV Profiles	1.0	1.77825
Hypoxia_Astrocyte_GSE4483	GEO Signatures of Differentially Expressed Genes for Diseases	1.0	0.684099
H3K27me3_Breast Myoepithelial Cells	Roadmap Epigenomics Histone Modification Site Profiles	1.0	null
T47D	Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles	1.0	0.7029
Skin Cutaneous Melanoma_SKCM_TCGA-EE-A2GI-06A-11R-A18T-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
female germ cell nucleus	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.417294
Fertilization	Reactome Pathways 2014	1.0	null
Twist2	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	17.8894
Pancreatic adenocarcinoma_PAAD_TCGA-IB-8127-01A-11R-2404-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
CDX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	32.6648
positive regulation of metabolic process	GO Biological Process Annotations 2015	1.0	null
SOX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.3985
LCLC-103H	COSMIC Cell Line Gene Mutation Profiles	1.0	null
collagen-containing extracellular matrix	COMPARTMENTS Curated Protein Localization Evidence Scores 2025	1.0	3.0
CREB3L4	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	42.9535
extracellular region	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
Lung adenocarcinoma_LUAD_TCGA-49-6767-01A-11R-1858-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
PPARD	ChEA Transcription Factor Targets	1.0	null
regulation of macromolecule metabolic process	GO Biological Process Annotations 2015	1.0	null
primary oocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.72322
Silk gland	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.587
PAX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	26.755
PK59	CCLE Cell Line Gene CNV Profiles	-1.0	-1.40372
disease of cellular proliferation	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.040364
Pericycle	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.601
intrinsic component of plasma membrane	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.134794
HAND2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	31.464
UCSD-242L	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.37809
regulation of calcium ion-dependent exocytosis	GO Biological Process Annotations 2015	1.0	null
cell lysate	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.254239
primary motor cortex (area M1, area 4)_12 pcw_F_12835	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.830928
pulse	GAD Gene-Disease Associations	1.0	null
ZB-72-PE17_1uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.277828
Microvillus	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.303
signal transducer activity	GO Molecular Function Annotations 2015	1.0	null
lysosomal storage disease	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.050809
NEUROG1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	19.5453
embryonic stem cell	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.542566
primary visual cortex (striate cortex, area V1/17)_13 pcw_M_12888	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	0.868455
ZNF140	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	39.8342
organelle	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.58134
PMC5928080-41467_2018_4092_MOESM6_ESM.xlsx-diff_expressed_mRNAs_total_onl-Supplementary_Data_3_mRNAs_differentially_expressed_in_total_RNA_fractions_of_control_and_YBX1_depleted_cells_YBX1	Rummagene Transcription Factor Associations 2026	1.0	null
SCL-21571218-MEGAKARYOCYTES-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
NR3C2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	17.5514
ELF1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	45.9884
TBX2	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	35.8363
positive regulation of t cell activation	GO Biological Process Annotations 2015	1.0	null
PC-3	COSMIC Cell Line Gene CNV Profiles	-1.0	-3.15179
BB-44-SX65_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.279922
posteroventral (inferior) parietal cortex_3 yrs_M_12980	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	-1.0	-0.984483
Sexine	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.578
TFAP2A	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	134.221
Neurodegenerative disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.227
A3/KAW	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	0.854026
Amenorrhea	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.389
CBX2-22325352-293T-REX-HUMAN	ChEA Transcription Factor Targets 2022	1.0	null
AC-36-TL21_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.262888
mature ovarian follicle	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	1.36723
cell projection part	COMPARTMENTS Text-mining Protein Localization Evidence Scores	1.0	0.063594
AE-38-QT35_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.481875
Yolk	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.552
FLI1::FOXI1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	54.5759
Male reproductive organ cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.133
Pheochromocytoma and Paraganglioma_PCPG_TCGA-W2-A7HC-01A-11R-A35L-07	TCGA Signatures of Differentially Expressed Genes for Tumors	1.0	null
primary somatosensory cortex (area S1, areas 3,1,2)_4 mos_M_12296	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.0278
External plexiform layer	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.141
NCIH596	CCLE Cell Line Gene Expression Profiles	-1.0	-1.93183
NCI-H1944	COSMIC Cell Line Gene Mutation Profiles	1.0	null
organ system cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.041029
GC-21-AN18_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.898723
KMS-26	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.64767
PMC7378211-41598_2020_69015_MOESM3_ESM.xlsx-EWS-WT1_rep1_testp-7_annotatedp-Nearest_Ensembl_WT1	Rummagene Transcription Factor Associations 2026	1.0	null
NANOG	ChEA Transcription Factor Targets	1.0	null
gonocyte	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.261624
TT2609-C02	COSMIC Cell Line Gene Mutation Profiles	1.0	null
Subcortical maternal complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	1.911
primary somatosensory cortex (area S1, areas 3,1,2)_21 pcw_M_12886	Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray	1.0	1.1634
PMC4815041-NIHMS715090-supplement-Supplementary_Table_10.xlsx-CCF_DP_clustering-Hugo_Symbol_PITX1	Rummagene Transcription Factor Associations 2026	1.0	null
secretion	GO Biological Process Annotations 2015	1.0	null
extracellular region part	COMPARTMENTS Curated Protein Localization Evidence Scores	1.0	0.663342
ZNF274	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	22.6051
ETV1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	75.476
ZNF449	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	34.4154
Esophagus - Gastroesophageal Junction	GTEx Tissue Gene Expression Profiles 2023	1.0	7.21239
ZNF684	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	44.8404
GSE253795_1_v_0_alkbh5_human	RummaGEO Gene Perturbation Signatures	1.0	null
Male reproductive system disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.632
positive regulation of leukocyte proliferation	GO Biological Process Annotations 2015	1.0	null
molecular transducer activity	GO Molecular Function Annotations 2015	1.0	null
CTCF	ENCODE Transcription Factor Targets	1.0	null
CUX1	ChEA Transcription Factor Targets	1.0	null
EF-85-DA07_10uM	NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles	1.0	0.224606
positive regulation of reproductive process	GO Biological Process Annotations 2025	1.0	null
ovary cell line	TISSUES Text-mining Tissue Protein Expression Evidence Scores	1.0	0.329727
JJN-3	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	-1.0	-1.12743
EBF3	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	43.0087
MYC	ChEA Transcription Factor Targets	1.0	null
bp86	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.823
MITF_01_79	KnockTF Gene Expression Profiles with Transcription Factor Perturbations	-1.0	-0.60906
Gonadal disease	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	2.026
Germ cell and embryonal cancer	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.186
Spz1	JASPAR Predicted Mouse Transcription Factor Targets 2025	1.0	26.5
Primary open angle glaucoma	DISEASES Text-mining Gene-Disease Association Evidence Scores 2025	1.0	1.754
RFX1	JASPAR Predicted Human Transcription Factor Targets 2025	1.0	27.8966
positive regulation of secretion by cell	GO Biological Process Annotations 2015	1.0	null
WM-115	Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles	1.0	1.10453
GSE223378_1_v_0_tead3_human	RummaGEO Gene Perturbation Signatures	1.0	null
Sepal	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	0.993
retinal degeneration	DISEASES Text-mining Gene-Disease Association Evidence Scores	1.0	0.495411
Germinal epithelium	TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025	1.0	1.099
Secretory IgA immunoglobulin complex	COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025	1.0	0.704