2170 sets of genes with high or low expression in each tissue relative to other tissues from the Allen Brain Atlas Adult Mouse Brain Tissue Gene Expression Profiles dataset.
| Gene Set |
Description |
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Infralimbic area, layer 2/3
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r9 part of gigantocellular reticular area
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Substantia nigra, reticular part
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periventricular stratum of isBL
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locus coeruleus
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Posterior amygdalar nucleus
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superficial stratum of r3Tr
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periventricular stratum of SeStr
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Lobules IV-V, granular layer
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putamen
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Subcortical nucleus of telencephalic , which together with the caudate nucleus, forms the striatum. The putamen lies lateral to the internal capsule and medial to the external medullary lamina, and is separated from the caudate nucleus by the fibers of the internal capsule for most of its length, except at its anterior portion.
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striohypothalamic nucleus
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Medial pretectal area
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Frontal pole, layer 1
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suboptic nucleus
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Periventricular region
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pregeniculate nucleus
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intermediate stratum of m2B
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Lobule III
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medial amygdala, anterodorsal part
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Intermediodorsal nucleus of the thalamus
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Nucleus of the solitary tract, medial part
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r7 part of gigantocellular reticular area
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dorsolateral preisthmic part of periaqueductal gray
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Cortical subplate
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The transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate
|
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Pontine reticular nucleus
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sublayer 6a of CCx
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Basic cell groups and regions
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anterior olfactory area, dorsal part
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Retrohippocampal region
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layer 1 of LOT
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precommissural pretectal domain
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intermediate stratum of r1Lim
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mantle zone of r8Tr
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Nucleus sagulum
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Taenia tecta
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anterior olfactory area, ventral part
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Taenia tecta, dorsal part, layer 2
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Taenia tecta, dorsal part, layer 3
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Taenia tecta, dorsal part, layer 1
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r4 part of pontine raphe cell population
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Taenia tecta, dorsal part, layer 4
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Declive (VI), granular layer
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dorsal tuberomammillary nucleus, intermediate part (histaminergic)
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liminal alar domain of m2
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Taenia tecta, dorsal part
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r2 part of superior vestibular nucleus
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r7 part of the vestibular column
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periventricular stratum of r3Co
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Epithalamus
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The caudal part of the roof and the adjoining lateral walls of the third ventricle of the diencephalon, comprising the habenular nuclei and their commissure, pineal body, and commissure of the epithalamus.
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anterior tegmental nucleus
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A group of cells located ventral to the decussation of the superior cerebellar peduncle in the mouse ( Paxinos-2001 ) and rat ( Swanson-1998 )
|
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intermediate part of isB
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Primary somatosensory area, trunk
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layer 3 of AOD cortex
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isthmic portion of paranigral nucleus
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Anterior cingulate area, ventral part, layer 2/3
|
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Ventral posterior complex of the thalamus
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superficial stratum of RtC
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Retrosplenial area, ventral part, layer 2
|
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Gustatory areas
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superficial stratum of SeStr
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Superior colliculus, motor related, intermediate white layer
|
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pyramidal layer of S
|
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Purkinje cell layer of CbHCx
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Anterior cingulate area, dorsal part, layer 5
|
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cerebellar hemisphere
|
A paired regions of the cerebellum that lie outside and lateral to the central vermis[MP]. The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted].
|
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dorsolateral (non-cerebellar) part of isA
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polymorph layer of TuPal
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dorsal part of THyB
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r7 part of rostral ventromedial reticular area
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m2 part of nucleus parabrachialis pigmentosus
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lateral part of m2A
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mesomere 2 (preisthmus or caudal midbrain)
|
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Ventral premammillary nucleus
|
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parasubiculum
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A transitional zone between the presubiculum and the entorhinal area in the mouse (Paxinos-2001), the rat (Swanson-1998) and the primate (Zilles-1990). Defined on the basis of cytoarchitecture, it is more similar to the presubiculum than to the entorhinal area (Zilles-1990). (from Brain Info)
|
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layer 6 of FCx
|
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intermediate white layer of SC
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dorsolateral IC periaqueductal gray
|
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Crus 2, granular layer
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Subparafascicular nucleus, parvicellular part
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superficial stratum of r8Lim
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mantle zone of cerebellar vermis
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superficial stratum of r8BM
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superficial stratum of r8BL
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layer 2 of AOD cortex
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liminal part of the r5 alar plate
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lateral terminal nucleus of the accessory optic tract, lateral part
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Magnocellular nucleus
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Lateral reticular nucleus, parvicellular part
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nucleus of the stria terminalis, medial division, anterior part
|
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nucleus of the inferior collicular brachium, rostral part
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Mediodorsal nucleus of the thalamus, lateral part
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|
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superficial stratum of PrS (cortical plate/marginal zone)
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Gustatory areas, layer 4
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intermediate stratum of r5Tr
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alar plate of m1
|
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Olfactory tubercle
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A small area of gray matter behind the olfactory trigone that is noted for receiving dopaminergic neurons from the substantia nigra and the reticular formation which have been implicated in schizoaffective disorders.
|
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Islands of Calleja
|
|
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mantle zone of SeDg
|
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anterior paraventricular nucleus of thalamus
|
The anterior of the two nuclei paraventriculares thalami.
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Bed nuclei of the stria terminalis, anterior division, anterolateral area
|
|
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cerebellar white matter
|
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intermediate stratum of Str
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intermediate stratum of DgSe
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root
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The usually underground part of a seed plant body that originates usually from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support, and differs from a stem especially in lacking nodes, buds, and leaves.
|
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r4 part of lateral pontine nuclei
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lateral septal nucleus, intermedio-ventral part
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r4 alar plate
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superficial stratum of ITTh
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superficial stratum of S
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subpallial amygdala
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dorsolateral part of Lat
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r7 portion of ambiguous motor nucleus
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liminal periaqueductal gray of m2
|
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paraventricular nucleus, peduncular or principal part
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Field CA1, stratum radiatum
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horizontal nucleus of the diagonal band
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Periaqueductal gray
|
Central gray matter surrounding the cerebral aqueduct in the mesencephalon. Physiologically it is probably involved in rage reactions, the lordosis reflex, feeding responses, bladder tonus, and pain.
|
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Supramammillary nucleus, medial part
|
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accumbens nucleus, shell domain
|
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Parvicellular reticular nucleus
|
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Bed nuclei of the stria terminalis, anterior division
|
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mantle zone of CoPV
|
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layer 6 of PaS
|
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mantle zone of CoPL
|
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intermediate stratum of PThE
|
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Midbrain, sensory related
|
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midbrain
|
The middle of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain.
|
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r8 part of spinal trigeminal nucleus, interpolar part
|
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prethalamus
|
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lateral part of PcP
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intermediate stratum of r6BI
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r9 part of trigeminal transition zone
|
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basal reticular formation of p1
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Paraventricular hypothalamic nucleus, descending division, lateral parvicellular part
|
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nucleus of the stria medullaris (prethalamic)
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intermediate stratum of r2BM
|
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intermediate stratum of r2BI
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r10 part of dorsal parvicellular reticular formation
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Retrosplenial area
|
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AOB, glomerular layer
|
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external globus pallidum
|
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r4 part of medial paralemniscal nucleus
|
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r7 part of ventral parvicellular reticular formation
|
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intercalate nucleus
|
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lateral mammillary nucleus
|
A component of the mammillary body.
|
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intermediate part of r3B
|
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anterior pretectal nucleus, ventral core part
|
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Thalamus
|
The largest subdivision of the diencephalon that consists chiefly of an ovoid mass of nuclei in each lateral wall of the third ventricle and functions in the integration of sensory information.
|
|
layer 2 of PaS
|
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Lingula (I)
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Bed nuclei of the stria terminalis, anterior division, oval nucleus
|
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lateral septal nucleus, intermediate part, periventricular
|
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Postsubiculum
|
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r9 part of nucleus gracilis
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Nucleus of the brachium of the inferior colliculus
|
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r3 part of basointermediate reticular formation
|
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paraventricular nucleus, rostral part
|
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Lateral septal nucleus, caudal (caudodorsal) part
|
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Accessory olfactory bulb, granular layer
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ventrolateral part of isA
|
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r8 part of gigantocellular reticular area
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Anterolateral visual area, layer 5
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Field CA2, pyramidal layer
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medial part of r6B
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ventromedial nucleus
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intermediate stratum of r4Tr
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r9 part of spinal trigeminal nucleus, interpolar part
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triangular septal nucleus
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layer 3 of PCx
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neural plate
|
The thickened dorsal plate of ectoderm that differentiates into the neural tube and neural crest; Ectoderm on the dorsal surface of the early vertebrate embryo that gives rise to the cells (neurons and glia) of the nervous system.
|
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dorsal entopeduncular nucleus
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Accessory olfactory bulb
|
The accessory olfactory bulb, which resides on the dorsal-posterior region of the main olfactory bulb, forms a parallel pathway independent from the main olfactory bulb. It is the second processing stage of the accessory olfactory system. It receives axonal input from the vomeronasal organ, a distinct sensory epithelium from the main olfactory epithelium that detects pheromones, among other chemical stimuli. Like the main olfactory bulb, axonal input to the accessory olfactory bulb forms synapses with mitral cells within glomeruli. However, mitral cells in the accessory olfactory bulb project their axons to targets in the amygdala and hypothalamus where they may influence aggressive and mating behavior.
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mantle zone of CbH
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r1 alar plate
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r6 part of spinal vestibular nucleus
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Septohippocampal nucleus
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Part of septal nuclear complex. In the human, it refers to the most caudal of scattered clusters of neurons in the septum pellucidum that extend, on the underside of the corpus callosum, from the level of the medial septal nucleus to the CA fields ( Crosby-1962 ). In the rat it is associated with the lateral septal nucleus throughout its rostro-caudal course toward the CA fields ( Swanson-1998. Adapted from Brain Info.
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intermediate stratum of r2Lim
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r11 alar plate
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hindbrain
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The posterior of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain that includes the cerebellum, the medulla oblongata, and in mammals the pons and that controls autonomic functions and equilibrium.
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p1 part of the substantia nigra compacta
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r7 part of trigeminal transition zone
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Midbrain reticular nucleus
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anterior nuclei
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mantle zone of m1Lim
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Superior colliculus, superficial gray layer
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Layer of the superior colliculus, lying just deep to the outermost stratum zonale (Carpenter, A Core Text of Neuroanatomy, 3rd ed., 1985, pg 175)
|
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peripeduncular nucleus
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A group of neuron cell bodies that form a thin, caplike configuration over the dorsolateral aspect of the crus cerebri; many of its cells are acetylcholinesterase positive.
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sublayer 6a of OCx
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Prelimbic area, layer 5
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Prelimbic area, layer 2
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Prelimbic area, layer 1
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r9 portion of vagal motor nucleus (postmigratory)
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r7 part of the trigeminal column
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isthmic liminal reticular area
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superficial stratum of r7Co
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Posterolateral visual area, layer 1
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Posterolateral visual area, layer 4
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Bed nuclei of the stria terminalis, posterior division, interfascicular nucleus
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Entorhinal area, medial part, ventral zone, layer 1
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Entorhinal area, medial part, ventral zone, layer 2
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Entorhinal area, medial part, ventral zone, layer 3
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induseum griseum
|
Thin layer of cortex lying on the dorsal surface of the corpus callosum. It has been debated whether it is more related to the hippocampus or the olfactory bulb (Shipley et al., Olfactory System In Paxinos The Rat Nervous System, 2nd ed)
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Main olfactory bulb, mitral layer
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Dorsomedial nucleus of the hypothalamus, anterior part
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intermediate stratum of r8BL
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intermediate stratum of r8BM
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intermediate stratum of r8BI
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Orbital area, medial part, layer 2
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Motor nucleus of trigeminal
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Abducens nucleus
|
Nucleus located beneath the floor of the 4th ventricle in the pontine tegmentum, containing motor neurons innervating the lateral rectus muscle of the eye (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 533)
|
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central part of MPO
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Subgeniculate nucleus
|
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liminal reticular formation of m2
|
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superficial stratum of r9Lim
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mantle zone of r6BM
|
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Anterior olfactory nucleus
|
A portion of the forebrain of vertebrates. It is found behind the olfactory bulb and in front of the piriform cortex (laterally) and olfactory tubercle (medially) in a region often referred to as the olfactory peduncle or retrobulbar area. The peduncle contains the anterior olfactory nucleus (AON) as well as two other much smaller regions, the tenia tecta (or dorsal hippocampal rudiment) and the dorsal peduncular cortex.
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Piriform area
|
An area in the rhinencephalon, pear-shaped in some species but not in humans; it includes the lateral olfactory process or gyrus, the limen insulae, the uncus, and part of the parahippocampal gyrus; subdivided into the prepiriform area, the periamygdaloid area, and the entorhinal area.
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Spinal nucleus of the trigeminal, oral part, rostral dorsomedial part
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accumbens nucleus, core domain
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Agranular insular area, dorsal part, layer 6a
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Ventral cochlear nucleus
|
The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted].
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r3 part of basomedial reticular formation
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Copula pyramidis, molecular layer
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Crus 2, molecular layer
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r10 part of vagal motor nucleus
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periventricular stratum of r6BM
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p1 part of the pararubral nucleus
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superficial stratum of the VAP
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OB glomerular layer
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Nucleus ambiguus, ventral division
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isthmic part of the periaqueductal gray
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liminal alar domain of m1
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mantle zone of m2AL
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dorsal peduncular cortex, periventricular part
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periventricular stratum of r4Ve
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granule cell layer of the DG
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mantle zone of m2AD
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mantle zone of Ist
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dorsomedial tegmental nucleus
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subbrachial nucleus, caudal part
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white matter of cerebellar vermis
|
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lateral spiriform nucleus
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lateral part of JcP
|
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Orbital area, lateral part, layer 2/3
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r8 part of nucleus of Roller
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r9 part of the vestibular column
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r1 part of ventral parvicellular reticular formation
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perimammillary part of PHyB
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layer 4 of InsCx
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p3 portion of the substantia nigra pars compacta
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superficial stratum of r4BI
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anterior digastric muscle trigeminal motor cell group
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superficial stratum of r4BM
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superficial stratum of r4BL
|
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medial pallium (hippocampal allocortex)
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medial amygdala, posteroventral part
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mantle zone of r8BM
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Field CA1, stratum lacunosum-moleculare
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mantle zone of r5Tr
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mantle zone of r8BI
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layer 1 of PaS
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striatum (corpus striatum)
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Paramedian lobule, granular layer
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basal part of terminal hypothalamus
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ventromedial preoptic nucleus
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horizontal nucleus of the diagonal band, transitional part
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Agranular insular area, dorsal part, layer 2/3
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r2 part of vestibular nucleus Y
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reuniens nucleus, main part
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Frontal pole, layer 2/3
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layer 2 of InsCx
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Median preoptic nucleus
|
The median preoptic nucleus is located along the midline in a position significantly dorsal to the other 3 preoptic nuclei, at least in the macaca fascicularis brain. It wraps around the top (dorsal), front, and bottom (ventral) surfaces of the anterior commissure. The median preoptic nucleus generates thirst. Drinking decreases noradrenaline release in the median preoptic nucleus.
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basolateral amygdaloid nucleus, posterior part
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Anteromedial nucleus, ventral part
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Ventromedial hypothalamic nucleus
|
A group of nerve cell bodies found in the ventral portion of the intermediate hypothalamic region; it is involved in diverse functions, for example, food intake and sexual behavior.
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presubiculum
|
A modified six-layered cortex between the subiculum and the main part of the parahippocampal gyrus.
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Dentate gyrus, granule cell layer
|
Granule cell layer is also called the DG principal cell layer. This one of the three layers of dentate gyrus that lies deep to the molecular layer and is made of densely packed layer that is four to eight granule cells thick.
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interanterodorsal nucleus
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Superior olivary complex, medial part
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superficial stratum of r6Tr
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medial part of r7B
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superficial stratum of r2Tr
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lateral pallium
|
Subdivision of pallium that is located laterally.
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Isocortex
|
The newer, six-layered portion of the cerebral cortex, showing stratification and organization characteristic of the most highly evolved type of cerebral tissue.
|
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mantle zone of m1AL
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intermediate stratum of 5BL
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intermediate stratum of TSPaA
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mantle zone of m1AD
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Parafascicular nucleus
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Basomedial amygdalar nucleus
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alar plate of p1
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Accessory olfactory bulb, mitral layer
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mantle zone of p1B
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Thalamus, polymodal association cortex related
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Geniculate group, ventral thalamus
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pyramidal layer of IG
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Secondary motor area
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subbrachial nucleus, rostral part
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superficial stratum of PSPa
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intermediate part of the arcuate nucleus
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medullary hindbrain (medulla)
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Parabrachial nucleus, medial division
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r10 part of spinal trigeminal nucleus, caudal part
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Intralaminar nuclei of the dorsal thalamus
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ventrolateral part of alar p1
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lateral periretromammillary nucleus
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Interpeduncular nucleus
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medial basal reticular formation of m1
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posterodorsal tegmental nucleus
|
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intermediate stratum of Hb
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r6 part of spinal trigeminal nucleus, pars oralis
|
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superficial stratum of r7BL
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superficial stratum of r7BM
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Supramammillary nucleus, lateral part
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peduncular paraventricular area of PHyA
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m2 part of substantia nigra compacta
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periventricular stratum of SC
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periventricular stratum of AOB
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Retrosplenial area, lateral agranular part
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posteromedial visual area, layer 2/3
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r9 part of the basolateral reticular formation
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retrotrapezoid nucleus
|
The loose collection of neurons that reside in the rostral medulla close to the medullary surface, ventral and immediately caudal of nVII, that are crucial for CO2 sensing in the brain
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isthmic alar plate
|
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periventricular stratum of JcPV
|
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Medial amygdalar nucleus, anteroventral part
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periventricular stratum of JcPL
|
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Retrosplenial area, lateral agranular part, layer 6a
|
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Culmen
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intermediate stratum of p2Lim
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diagonal domain
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sublayer 6a of FCx
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bed nucleus of the stria terminalis, laterocentral division
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r2 part of vestibular sensory column
|
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Ansiform lobule
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A lobule comprising the greater part of the hemisphere of the cerebellum; its superior and inferior surfaces are separated by the horizontal fissure into major parts known as crus I (superior semilunar lobule) and crus II (inferior semilunar lobule).
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Primary somatosensory area, trunk, layer 6b
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Primary somatosensory area, trunk, layer 6a
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Postpiriform transition area
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Arcuate hypothalamic nucleus
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medial part of the isB
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ventral endopiriform nucleus
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layer 6 of RSC
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Parabrachial nucleus, lateral division, superior lateral part
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Subiculum
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The zone of transition between the parahippocampal gyrus and Ammon's horn of the hippocampus.
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oculomotor nucleus, Edinger-Westphal subnucleus
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isthmic liminal part of the periaqueductal gray
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colliculus superior
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Medial group of the dorsal thalamus
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intermediate stratum of r3Ve
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posteromedial visual area, layer 6a
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intermediate stratum of Ist
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posteromedial visual area, layer 6b
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mantle zone of r3Ve
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periventricular stratum of r6Co
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layer 3 of VPrP cortex
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lateral part of r9B
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mantle zone of m2ADL
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mantle zone of r2BM
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mantle zone of r2BL
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mantle zone of r2BI
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Lateral hypothalamic area
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The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted].
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Pyramus (VIII)
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juxtacommissural pretectal domain
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retromammillary area, medial part
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periventricular stratum of isBI
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Fastigial nucleus
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the most medial of the cerebellar nuclei; it receives its afferent input from Purkinje cells of the flocculonodular lobe and the vermis, and most of its efferent connections travel via the inferior cerebellar peduncle to the vestibular nuclei and to the medullary reticular formation
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r7 part of basomedial reticular formation
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periventricular stratum of r3Lim
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dorsomedial preoptic area, intermediate part
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mantle zone of PThE
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r5 part of the cochlear column
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Copula pyramidis
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.[MP].
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superficial stratum of CoPV
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dorsolateral part of m2A
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superficial stratum of p2ZL
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r10 basal plate
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central amygdaloid nucleus, medial part
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r6 part of basomedial reticular formation
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periventricular stratum of AStr
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Inferior colliculus, dorsal nucleus
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intermediate stratum of RtC
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Claustrum
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The one of the four basal ganglia in each cerebral hemisphere that consists of a thin lamina of gray matter between the lentiform nucleus and the insula.
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lateral preoptic area, PO1 part
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intermediate isthmic part of the dorsal raphe nucleus
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central part of MD
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lateral (dentate) cerebellar nucleus
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mantle zone of r9Lim
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medial amygdala, anteroventral part
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mantle zone of r1Tr
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Bed nuclei of the stria terminalis
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ventral striatum
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Those portions of the striatum located generally inferior to a plane representing the anterior commissure; includes the nucleus accumbens and some nuclei of the olfactory tubercle; may function in motor activities with emotional or motivational origins.
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magnocellular diagonal band nucleus
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Medial septal nucleus
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A nucleus in the septal area, coextensive with the diagonal band of Broca; it has afferent and cholinergic efferent connections with a variety of forebrain and brain stem areas including the hippocampus, the lateral hypothalamus, the tegmentum, and the amygdaloid bodies.
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r1 part of superior vestibular nucleus
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mantle zone of InsCx
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Orbital area, ventrolateral part, layer 1
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Orbital area, ventrolateral part, layer 5
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Anterior cingulate area
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Uvula (IX), molecular layer
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ventral juxtacommissural pretectal nucleus
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parvocellular part of the r9LRt
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Subiculum, ventral part
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corticoid layer of TuStr
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layer 3 of PaS
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intermediate stratum of the PBC
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septopallidal transition area
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posterior (ventral) nucleus
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m1 part of parabrachialis pigmentosus
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paralemniscal isthmic area
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r3 alar plate
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intermediate stratum of r1BI
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intermediate stratum of r1BM
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intermediate stratum of r1BL
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mammillary area
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Dorsal tegmental nucleus
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interstitial nucleus of the posterior limb of the anterior commissure
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Dorsal peduncular area, layer 5
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Orbital area, medial part, layer 1
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Dorsal peduncular area, layer 1
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Orbital area, medial part, layer 5
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septopallidal core nucleus
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intermediate stratum of TG
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mantle zone of m2B
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Gustatory areas, layer 2/3
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mantle zone of p2B
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Koelliker-Fuse subnucleus
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layer 3 of AOV cortex
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A4 noradrenergic cell group
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layer 1 of ERCx
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lateral preoptic nucleus, PO2 part
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superficial stratum of OCx (cortical plate/marginal zone)
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intermediate stratum of PO1
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intermediate stratum of PO2
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r2 part of median raphe nucleus
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r5 part of the trigeminal column
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superficial stratum of m2ADL
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superficial stratum of SC
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Ventral medial nucleus of the thalamus
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oval paracentral nucleus
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mantle zone of r1Lim
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Striatum-like amygdalar nuclei
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intermedioposterior nucleus
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posteroventral part of alar p3
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r4 part of trigeminal sensory column
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p2 part of the zona limitans core population
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superficial stratum of r4Co
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intermediate stratum of POH
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interstitial nucleus of the zona limitans
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intralaminar nuclei
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lambdoid septal zone
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trochlear nucleus
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Nucleus in the midbrain at the level of the inferior colliculus near the midline, containing the motor neurons giving rise to the trochlear nerve, innervating the contralateral superior oblique extraocular muscle of the eye (Brodal, Neurological Anatomy, 3rd ed, 1981, pg. 533).
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lateral SC part of the periaqueductal gray
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medial (main) part of Med
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central subpallium (classic basal ganglia)
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superficial stratum of r2Lim
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Posterior pretectal nucleus
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Diencephalic nucleus that is part of the superficial pretectum and is rostrally contiguous with the magnocellular superficial pretectal nucleus. Cells of the caudal pretectal nucleus are slightly smaller and less orderly around a central neuropil than those of the magnocellular superficial pretectal nucleus. From Neuroanatomy of the Zebrafish Brain.
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shell of P-DMH
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Nucleus of the lateral olfactory tract, layer 3
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superficial stratum of r9Tr
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caudal linear (raphe) nucleus
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Superior colliculus, motor related, deep white layer
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superficial stratum of InsCx (cortical plate/marginal zone)
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caudal secondary prosencephalon
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r6 part of trigeminal transition zone
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retromammillary area, lateral part
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superficial stratum of r9BI
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Paracentral nucleus
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one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus.
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superficial stratum of r9BL
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superficial stratum of r9BM
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Primary somatosensory area, mouth, layer 1
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Intercalated amygdalar nucleus
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Primary somatosensory area, mouth, layer 5
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Primary somatosensory area, mouth, layer 4
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superficial stratum of r5Co
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periventricular stratum of DTTh
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intermediate stratum of r6Ve
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Anterior cingulate area, ventral part, layer 5
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Anterior cingulate area, ventral part, layer 1
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r2 part of basolateral reticular formation
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reticular formation of p2Lim
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nucleus of the lateral olfactory tract
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Linear nucleus of the medulla
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r6 part of parvocellular medial vestibular nucleus
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lateral part of the lateral habenular nucleus
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dorsofrontal pretectal nucleus
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Paraventricular hypothalamic nucleus, magnocellular division, medial magnocellular part
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Parasubiculum, layer 2
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Parasubiculum, layer 3
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Parasubiculum, layer 1
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prethalamic (p3) zona limitans domain
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intermediate stratum of r6BL
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r2 part of the ventral parvicellular reticular formation
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r7 part of parapyramidal nucleus
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Anterior cingulate area, dorsal part
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Bed nuclei of the stria terminalis, anterior division, fusiform nucleus
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Lateral visual area
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r10 alar plate
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superficial part of arcuate nucleus
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r7 part of the posteroventral cochlear nucleus
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sublayer 6b of CCx
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Cerebral nuclei
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superficial stratum of r8BI
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dorsal part of PHyB
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Agranular insular area, ventral part
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Secondary motor area, layer 2/3
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intermediate stratum of PcPV
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Pyramus (VIII), molecular layer
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Subiculum, dorsal part, stratum radiatum
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intermediate stratum of PcPD
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lateral septal nucleus, dorsal part
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intermediate stratum of m1Lim
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intermediate stratum of PcPL
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Diagonal band nucleus
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r3 part of spinal trigeminal sensory column, oral part
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molecular layer of CbVCx
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medial habenular nucleus
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periventricular stratum of APal
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Bed nuclei of the stria terminalis, anterior division, ventral nucleus
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intermediate stratum of Pal
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Copula pyramidis, granular layer
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periventricular stratum of r1BL
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periventricular stratum of r1BM
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intermediate stratum of IC
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AOB, internal plexiform layer
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fasciola cinerea
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A posterior and upward extension of the dentate gyrus, forming a transitional area between the dentate gyrus and the indusium griseum.
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mantle zone of r9Tr
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superficial stratum of r2BL
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ventrolateral periolivary nucleus
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r1 part of principal trigeminal sensory nucleus
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dorsal nucleus of the lateral lemniscus
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Ventral part of the lateral geniculate complex
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Anterior hypothalamic nucleus, central part
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Cortical amygdalar area, posterior part, medial zone, layer 1
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Cortical amygdalar area, posterior part, medial zone, layer 2
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Cortical amygdalar area, posterior part, medial zone, layer 3
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periventricular stratum of r3Ve
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periventricular stratum of Ist
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dorsomedial part of VMH
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p1Lim part of periaqueductal gray
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Gustatory areas, layer 5
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Pontine gray
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Ventral tegmental nucleus
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A nucleus of brain that is part of a ventral tegmental area.
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intermediate stratum of r10Tr
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intermediate stratum of m1AL
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basal plate of p1
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basal plate of p3
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basal plate of p2
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Basolateral amygdalar nucleus
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intermediate stratum of m1AD
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Dorsal nucleus raphe
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Fields of Forel
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intermediate part of r9B
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r10 part of gigantocellular reticular area
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Medial amygdalar nucleus, posterodorsal part
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lateral part of r8B
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Nucleus of the lateral olfactory tract, molecular layer
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Piriform area, pyramidal layer
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Supplemental somatosensory area
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intermediate stratum of PSPa
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r1 roof plate
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liminal part of the r9 alar plate
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layer 2 of ERCx
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rostral interpeduncular nucleus
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periventricular stratum of r10BM
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Pontine central gray
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cerebellar vermis
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A subregion of the cerebellar cortex, consisting of the most medial zone of the cerebellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissures in others (e.g., ventrally)
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Posterior parietal association areas, layer 6a
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mantle zone of r2Co
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Posterior parietal association areas, layer 6b
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ventrolateral part of VMH
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amygdalo-striatal transition
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suprachiasmatic nucleus
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A small group of neurons situated immediately dorsal to the optic chiasma in the anterior hypothalamus.
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prerubral area
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r3 part of basolateral reticular formation
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mesomere 1
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pretectal tegmentum
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Orbital area, lateral part, layer 6a
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Hippocampal region
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OB inner plexiform layer
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r8 basal plate
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liminal part of the r6 alar plate
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Subparafascicular nucleus
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The term subparafascicular nucleus refers to a cell group located ventral to the parafascicular nucleus in the thalamus. Identified by internal structure, it is present in the human ( Mai-1997 ), the macaque ( Paxinos-2009a ), the rat ( Swanson-1998 ), and the mouse ( Hof-2000 ).
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Globus pallidus, internal segment
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Bed nuclei of the stria terminalis, anterior division, juxtacapsular nucleus
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Bed nuclei of the stria terminalis, anterior division, anteromedial area
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r3 part of the trigeminal motor nucleus
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pallidal amygdala
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Orbital area, ventrolateral part
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r5 part of basolateral reticular formation
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layer 6 of PrS
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ventral part of PcP
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Nucleus of Roller
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r10 part of spinal vestibular nucleus
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Prelimbic area, layer 6a
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Prelimbic area, layer 6b
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dorsal periolivary nucleus
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Primary motor area, Layer 1
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periventricular stratum of r8Ve
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Primary motor area, Layer 5
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r5 part of ventral lateral lemniscal nucleus
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Caudoputamen
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periventricular stratum of r4Lim
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Parabrachial nucleus, lateral division, ventral lateral part
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lateral terminal nucleus of the accessory optic tract, ventral part
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intermediate stratum of r4Ve
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r7 part of dorsal parvicellular reticular formation
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Vermal regions
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medial part of r1B
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Precommissural nucleus
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Piriform-amygdalar area, molecular layer
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Nucleus of the trapezoid body
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r3 basal plate
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superficial stratum of r5BM
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superficial stratum of r5BI
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r10 part of ventral parvicellular reticular formation
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layer 2 of PrS
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OB granular layer
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superficial stratum of r4Ve
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superficial stratum of AHy
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r6 part of nucleus prepositus
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r1 part of basolateral reticular formation
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r8 part of ventral parvicellular reticular formation
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Field CA3, stratum radiatum
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mantle zone of p3B
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substantia nigra reticulata, m1 part
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mantle zone of r10BL
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periventricular stratum of p1B
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Dorsal peduncular area
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Crus 1
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r5 part of the vestibular column
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Crus 2
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Basomedial amygdalar nucleus, posterior part
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layer 1 of OCx
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Primary somatosensory area, upper limb, layer 2/3
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superficial stratum of PCPD
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mantle zone of r9BI
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subethmoid nucleus
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mantle zone of r9BL
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mantle zone of r9BM
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alar plate of p2 (alar thalamus)
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cerebellar nuclei of CbH
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r8 part of inferior olive
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superficial stratum of r10Tr
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r10 part of nucleus gracilis
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Perihypoglossal nuclei
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Intermediate reticular nucleus
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A nucleus of brain that is part of a intermediate reticular formation.
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Nucleus accumbens
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A nucleus forming the floor of the caudal part of the anterior prolongation of the lateral ventricle of the brain.
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superior periolivary nucleus
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neuropeptide-S nucleus
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periventricular stratum of r2Ve
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r9 part of external cuneate nucleus
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Field CA3, stratum pyramidale
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Paraflocculus, molecular layer
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liminal nucleus
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mantle zone of r1BM
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Gigantocellular reticular nucleus
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superficial mantle of isBM
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PcPV part of the periaqueductal gray
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Cerebellar nuclei
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Hemispheric regions
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r1 part of basointermediate reticular formation
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Subiculum, ventral part, molecular layer
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Lateral habenula
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Simple lobule, molecular layer
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intermediate stratum of DG
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r4 part of basolateral reticular formation
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Somatosensory areas
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anteroventral periventricular preoptic nucleus
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lateral part of r7B
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Posterior hypothalamic nucleus
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A nucleus of nerve cells in the posterior hypothalamic region, above the lateral and medial nuclei of the mammillary body; it has major brain stem connections via periventricular fibers and the dorsal longitudinal fasciculus.
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Entorhinal area, lateral part, layer 3
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mantle zone of the PBC
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Entorhinal area, lateral part, layer 1
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Entorhinal area, lateral part, layer 5
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Pallidum, medial region
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upper dorsal perifornical nucleus
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supragenual nucleus
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intermediate stratum of r3Lim
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lateral part of Med
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Visual areas
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Temporal association areas
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superficial stratum of JcPL
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ventral premammillary nucleus (migrated)
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Main olfactory bulb
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The main olfactory bulb has a multi-layered cellular architecture. In order from surface to the center the layers are: Glomerular layer, External plexiform layer, Mitral cell layer, Internal plexiform layer, Granule cell layer[WP].
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mantle zone of VTTh
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dorsolateral part of Int
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periventricular stratum of PalSe
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r1 part of vestibulocerebellar nucleus
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AOB, mitral cell layer
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intermediate stratum of r3BI
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mantle zone of r1Ve
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intermediate stratum of r3BM
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r1 part of vestibular sensory column
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periventricular stratum of PcPV
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intermediate stratum of r2Ve
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Agranular insular area
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Retrosplenial area, ventral part, layer 2/3
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periventricular stratum of PcPL
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molecular layer of S
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Basolateral amygdalar nucleus, anterior part
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Facial motor nucleus
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Nucleus located in the pontine tegmentum containing motor neurons that innervate the muscles of the face. Some neurons that project to the cerebellum have also been identified in some species.
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layer 1 of CCx
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periventricular stratum of OB
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anterior pretectal nucleus, ventral superficial part
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Primary visual area, layer 2/3
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Uvula (IX)
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Dorsal peduncular area, layer 6a
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liminal part of the r7 alar plate
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Bed nucleus of the anterior commissure
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JcPV part of the periaqueductal gray
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Paragigantocellular reticular nucleus, lateral part
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pallium
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Dorsal part (roof region) of the telencephalon[GO].
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Postpiriform transition area, layers 3
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Nucleus of the lateral olfactory tract, pyramidal layer
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superficial stratum of r6BI
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pontine hindbrain
|
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|
superficial stratum of p3ZL
|
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|
r7 part of paragigantocellular nucleus
|
|
|
layer 6b of RSC
|
|
|
tuberal nucleus
|
|
|
bed nucleus of the stria terminalis, mediocentral division
|
|
|
mantle zone of SC
|
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|
superficial stratum of PCx (cortical plate/marginal zone)
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|
Primary somatosensory area, unassigned
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|
Entorhinal area, lateral part, layer 2b
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dorsal peduncular cortex, intermediate part
|
|
|
r9 part of the lateral reticular nucleus
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|
Lobule II
|
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mantle zone of r3Tr
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|
Midbrain, behavioral state related
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superficial dorsofrontal area
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|
shell part of the anterobasal nucleus
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|
Anterodorsal nucleus
|
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perilemniscal isthmic area
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periventricular stratum of isLim
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|
mantle zone of PCx
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magnocellular interstitial nucleus of the posterior commissure
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preisthmic midbrain tectum
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|
Field CA2, stratum oriens
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intermediate stratum of JcPL
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|
pyramidal layer of taenia tecta
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|
basal plate of m1
|
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Paraventricular hypothalamic nucleus, parvicellular division, medial parvicellular part, dorsal zone
|
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|
superficial stratum of Hb
|
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|
paraseptal subpallium
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|
Flocculus, granular layer
|
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|
Main olfactory bulb, glomerular layer
|
|
|
ventral posteromedial nucleus
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ventrolateral preoptic nucleus
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|
superficial stratum of CA
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|
layer 5 of PCx
|
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|
cortex of cerebellar hemisphere
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|
p1 portion of the paranigral nucleus
|
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|
superficial stratum of r10BM
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|
layer 5 of RSC
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Periventricular zone
|
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|
centromedian nucleus
|
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|
posterior triangular nucleus
|
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|
Anterior group of the dorsal thalamus
|
|
|
Ammon's horn
|
One of the two interlocking gyri composing the hippocampus, the other being the dentate gyrus.
|
|
Primary motor area
|
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|
superficial stratum of Str
|
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|
r4 liminal central gray
|
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|
laterodorsal tegmental nucleus
|
A nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum.
|
|
dorsal tier of thalamus
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|
Primary somatosensory area
|
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|
Dorsomedial nucleus of the hypothalamus
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roof plate of p2 (epithalamic roofplate)
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|
terminal nucleus of the stria medullaris
|
|
|
r8 part of the paragigantocellular nucleus
|
|
|
r7 portion of the hypoglossal motor nucleus
|
|
|
superficial stratum of PPaA
|
|
|
superficial stratum of r9Ve
|
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|
mantle zone of VAP
|
|
|
m2 alar plate
|
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|
Gracile nucleus
|
Nucleus in the caudal medulla that receive projections primarily from ipsilateral dorsal root ganglion cells via the posterior column of the spinal cord
|
|
external part of AOD
|
|
|
Primary visual area, layer 6b
|
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|
Primary visual area, layer 6a
|
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|
r9 part of basointermediate reticular formation
|
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|
intermediate (interpositus) cerebellar nucleus
|
|
|
mantle zone of CoPD
|
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|
external part of AOV
|
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|
Dentate gyrus
|
A serrated strip of gray matter under the medial border of the hippocampus and in its depths; it is an archaeocortex which develops along the edge of the hippocampal fissure and which consists of molecular, granular, and polymorphic layers.
|
|
anterior pretectal nucleus, dorsal superficial part
|
|
|
intermediate stratum of r6Tr
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|
medial part of r2B
|
|
|
Lateral septal complex
|
The lateral septal area; largest nuclear mass in this region, plays a pivotal role in various physiological processes, such as aggression, emotion, thermoregulation, water and food intake and sexual behaviour.
|
|
Secondary motor area, layer 1
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|
Secondary motor area, layer 5
|
|
|
mantle zone of p1Lim
|
|
|
layer 4 of RSC
|
|
|
Ventral posteromedial nucleus of the thalamus
|
|
|
telencephalic vesicle
|
|
|
Primary somatosensory area, barrel field, layer 2/3
|
|
|
mantle zone of r4Lim
|
|
|
Entorhinal area
|
The inferior and posterior parts of the piriform area, including the caudal part of the parahippocampal gyrus.
|
|
superficial stratum of m1AL
|
|
|
intermediate stratum of r2Tr
|
|
|
Agranular insular area, ventral part, layer 2/3
|
|
|
r5 part of ventral parvicellular reticular formation
|
|
|
r3 part of vestibular sensory column
|
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|
r4 part of dorsal parvicellular reticular formation
|
|
|
periventricular stratum of CoPV
|
|
|
intermediate stratum of p2B
|
|
|
rostromedial tegmental nucleus
|
|
|
periventricular stratum of r7Ve
|
|
|
lateral wings of the dorsal raphe nucleus
|
|
|
cingulate cortex
|
A part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly.
|
|
Paraventricular hypothalamic nucleus
|
A sharply defined band of cells in the wall of the third ventricle in the anterior hypothalamic region; many of its cells are neurosecretory in function, secreting oxytocin, which is carried to the neurohypophysis (posterior pituitary) by the fibers of the paraventriculohypophysial tract.
|
|
Inferior colliculus
|
Part of the midbrain tectum, consisting of paired predominantly gray matter elevations on the dorsal aspect of the midbrain, located caudal to the superior colliculus, dorsal to the periaqueductal gray of the cerebral aqueduct and rostral to the cerebellum. According to Neuronames, the inferior colliculus comprises the central, pericentral and external nucleus and two predominantly white matter structures, the brachium of the inferior colliculus and the commissure of the inferior colliculus (MM).
|
|
periventricular stratum of p1Lim
|
|
|
periventricular stratum of p3ZL
|
|
|
periventricular stratum of Hb
|
|
|
Medial geniculate complex, medial part
|
|
|
mantle zone of m1B
|
|
|
parabigeminal nucleus
|
Cholinergic cell group that is located ventral to the brachium of the inferior colliculus (in rat) and has reciprocal connectivity with the superior colliculus (Adapted from Paxinos, The rat central nervous system, 2nd ed, 1995, pg 865
|
|
Suprageniculate nucleus
|
|
|
lower basal perifornical nucleus
|
|
|
Anteromedial visual area, layer 6b
|
|
|
Anteromedial visual area, layer 6a
|
|
|
Septofimbrial nucleus
|
|
|
mantle zone of p2Lim
|
|
|
Primary somatosensory area, upper limb
|
|
|
Inferior colliculus, external nucleus
|
|
|
intermediate stratum of CoPV
|
|
|
intermediate stratum of CoPL
|
|
|
intermediate stratum of r2BL
|
|
|
lateral part of alar m1
|
|
|
intermediate stratum of r6BM
|
|
|
intermediate stratum of CoPD
|
|
|
Vestibular nuclei
|
|
|
mantle zone of r8Lim
|
|
|
layer 3 of OCx
|
|
|
Agranular insular area, dorsal part, layer 5
|
|
|
isthmic vestibulocerebellar nucleus
|
|
|
Agranular insular area, dorsal part, layer 1
|
|
|
Prelimbic area
|
|
|
superficial stratum of DTTh
|
|
|
nucleus of the stria terminalis, medial division, ventral part
|
|
|
periventricular stratum of PO2
|
|
|
periventricular stratum of PO1
|
|
|
r7 part of spinal vestibular nucleus
|
|
|
lateral part of MPO
|
|
|
superficial stratum of r3Co
|
|
|
Tuberomammillary nucleus
|
The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted].
|
|
pretectum
|
|
|
reticular formation of basal m2
|
|
|
superficial stratum of SePal
|
|
|
mantle zone of r10BM
|
|
|
mantle zone of RtC
|
|
|
preisthmic tegmentum
|
|
|
mantle zone of r10BI
|
|
|
Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, dorsal zone
|
|
|
superficial stratum of m1AD
|
|
|
Ventral posterolateral nucleus of the thalamus
|
|
|
intermediate stratum of r10Ve
|
|
|
intermediate stratum of SC
|
|
|
r9 part of the trigeminal column
|
|
|
superficial stratum of r7Lim
|
|
|
Spinal vestibular nucleus
|
|
|
zona incerta complex
|
|
|
r11 part of spinal trigeminal nucleus, caudal part
|
|
|
cuneiform nucleus
|
|
|
r3 part of dorsal parvicellular reticular formation
|
|
|
mantle zone of r7Co
|
|
|
lateral part of r6B
|
|
|
intermediate stratum of r9Ve
|
|
|
intermediate stratum of CbH
|
|
|
Mediodorsal nucleus of the thalamus, medial part
|
|
|
rostral paraventricular nucleus
|
|
|
occipital cortex
|
This lobe is located at the back of the head and is involved in vision and reading.
|
|
mantle zone of the IG
|
|
|
periventricular stratum of r1Ve
|
|
|
olfactory bulb, principal part
|
|
|
Periventricular hypothalamic nucleus, posterior part
|
|
|
Ectorhinal area/Layer 5
|
|
|
posterior part of Int
|
|
|
lateral part of preisthmic periaqueductal gray
|
|
|
r10 part of the trigeminal column
|
|
|
Lingula (I), granular layer
|
|
|
anteromedial nucleus
|
|
|
Retrosplenial area, lateral agranular part, layer 6b
|
|
|
layer 1 of PrS
|
|
|
Anterior olfactory nucleus, lateral part
|
|
|
Cortical amygdalar area, posterior part, lateral zone
|
|
|
intermediate stratum of VPrP
|
|
|
Parastrial nucleus
|
|
|
hypothalamic amygdala
|
|
|
periventricular stratum of r8BM
|
|
|
basal peduncular hypothalamus
|
|
|
layer 2 of FCx
|
|
|
Primary motor area, Layer 2/3
|
|
|
liminal part of r4 alar plate
|
|
|
posterobasal nucleus, intermediate part
|
|
|
r2 part of the trigeminal motor nucleus
|
|
|
Orbital area
|
|
|
Lateral dorsal nucleus of thalamus
|
|
|
isthmus
|
|
|
periventricular stratum of r8Tr
|
|
|
superficial stratum of the IG
|
|
|
Pedunculopontine nucleus
|
|
|
mantle zone of ITTh
|
|
|
r1 part of intermediate nucleus of the lateral lemniscus
|
|
|
shell of T-DMH
|
|
|
mantle zone of DgSe
|
|
|
core part of DTg
|
|
|
principal pretectal nucleus
|
|
|
alar plate of p3 (alar prethalamus)
|
|
|
Agranular insular area, ventral part, layer 6a
|
|
|
dorsal juxtacommissural pretectal nucleus
|
|
|
medial part of r3B
|
|
|
intermediate stratum of isBL
|
|
|
p1B part of the periaqueductal gray
|
|
|
intermediate stratum of isBI
|
|
|
retromammillary area
|
|
|
Primary somatosensory area, unassigned, layer 1
|
|
|
Reticular nucleus of the thalamus
|
|
|
Primary somatosensory area, unassigned, layer 5
|
|
|
superficial stratum of r4Tr
|
|
|
r3 part of magnocellular medial vestibular nucleus
|
|
|
mantle zone of r4BI
|
|
|
mantle zone of r4BM
|
|
|
mantle zone of r4BL
|
|
|
r4 part of magnocellular medial vestibular nucleus
|
|
|
Orbital area, medial part, layer 6a
|
|
|
intermediate stratum of p3B
|
|
|
r1 part of the 'mesencephalic' trigeminal nucleus
|
|
|
lower dorsal lateral hypothalamic area
|
|
|
Field CA1, stratum pyramidale
|
|
|
Central amygdalar nucleus, medial part
|
|
|
periventricular stratum of r2BM
|
|
|
terminal subparaventricular area of THyA
|
|
|
r6 part of the cochlear column
|
|
|
Hypothalamic medial zone
|
|
|
rhombomere 1
|
Hindbrain segment or neuromere 1.
|
|
retrohypothalamic nucleus
|
|
|
rhombomere 7
|
the seventh transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
mantle zone of TPaA
|
|
|
medial pretectal nucleus
|
|
|
intermediate stratum of VTTh
|
|
|
liminal part of the r10 alar plate
|
|
|
Lobules IV-V
|
|
|
Field CA3, stratum oriens
|
|
|
superficial layers of TG
|
|
|
periventricular stratum of RtC
|
|
|
upper dorsal lateral hypothalamic area
|
|
|
rhombomere 9
|
|
|
lateral part of MM
|
|
|
r3 part of ventral parvicellular reticular formation
|
|
|
layer 5 of FCx
|
|
|
mantle zone of RMa
|
|
|
anterior pretectal nucleus, dorsal core part
|
|
|
Anteromedial visual area, layer 5
|
|
|
PcPL part of the periaqueductal gray
|
|
|
mantle zone of r2Tr
|
|
|
Subceruleus nucleus
|
|
|
r4 basal plate
|
|
|
Field CA3, stratum lacunosum-moleculare
|
|
|
anteroventral nucleus
|
|
|
thalamic tegmentum
|
|
|
Brain stem
|
The part of the brain composed of the mesencephalon, pons, and medulla oblongata and connecting the spinal cord with the forebrain and cerebrum.
|
|
Agranular insular area, ventral part, layer 1
|
|
|
basomedial amygdaloid nucleus, posterior part
|
|
|
Agranular insular area, ventral part, layer 5
|
|
|
intermediate stratum of r4Lim
|
|
|
Cerebellum
|
A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe.
|
|
r6 part of magnocellular medial vestibular nucleus
|
|
|
Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part, lateral zone
|
|
|
perimammillary part of THyB
|
|
|
mantle zone of OCx
|
|
|
temporal muscle trigeminal motor cell group
|
|
|
liminal part of the r8 alar plate
|
|
|
r4 part of vestibular sensory column
|
|
|
reticular formation of p1Lim
|
|
|
superficial stratum of PaS (cortical plate/marginal zone)
|
|
|
medial tuberal nucleus
|
|
|
lateral (parvicellular) part of MD
|
|
|
Endopiriform nucleus, ventral part
|
|
|
layer 6 of PCx
|
|
|
insular cortex
|
The insula is a portion of the cerebral cortex that is not visible until the margins of the lateral sulcus are opened up, or, as in this case, removed. The insular cortex is roughly triangular. Originally part of the superficial cortex, in higher mammals it became submerged beneath the expanding cortex around it, thereby remaining relatively close to the basal ganglia of the hemisphere. Complete submergence of the insular cortex is a feature of the human brain and is not found even in other primates.
|
|
periventricular stratum of m1Lim
|
|
|
ventropallial amygdalopiriform area
|
|
|
mantle zone of SePal
|
|
|
Pallidum, dorsal region
|
|
|
r9 alar plate
|
|
|
lateral part of r5B
|
|
|
isthmic part of basolateral isthmic reticular formation
|
|
|
OB outer plexiform layer
|
|
|
intermediate stratum of AStr
|
|
|
r1 part of trigeminal sensory column
|
|
|
mantle zone of r7BL
|
|
|
mantle zone of r7BM
|
|
|
plexiform layer of TuPal
|
|
|
mantle zone of r7BI
|
|
|
dorsal part of PcP
|
|
|
mantle zone of PalSe
|
|
|
ventral part of CoP
|
|
|
basomedial amygdaloid nucleus, anterior part
|
|
|
basolateral amygdaloid nucleus, ventral part
|
|
|
Flocculus
|
the small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule that receives input from the inferior and medial vestibular nuclei and sends fibers back to the vestibular nuclei, and processes and integrates these signals to allow for the constant maintenance of balance
|
|
Anteromedial visual area
|
|
|
intermediate stratum of p3ZL
|
|
|
alar part of terminal hypothalamus
|
|
|
dorsal terminal nucleus of the accessory optic tract
|
|
|
p2 portion of the substantia nigra pars compacta
|
|
|
mantle zone of r6Tr
|
|
|
periventricular stratum of IC
|
|
|
Superior olivary complex
|
A a collection of brainstem nuclei that functions in multiple aspects of hearing and is an important component of the ascending and descending auditory pathways of the auditory system.
|
|
intermediate stratum of Mam
|
|
|
Lobule III, molecular layer
|
|
|
Paraventricular hypothalamic nucleus, parvicellular division, anterior parvicellular part
|
|
|
r3 part of cochlear sensory column
|
|
|
periventricular stratum of TTe
|
|
|
mantle zone of r7Lim
|
|
|
layer 1 of PCx
|
|
|
intergeniculate leaflet
|
|
|
r4 part of medial pontine nuclei
|
|
|
Central lobule
|
The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted].
|
|
Subthalamic nucleus
|
A biconvex mass of gray matter on the medial side of the junction of the internal capsule and the crus cerebri; its chief connections are with the globus pallidus.
|
|
Primary somatosensory area, unassigned, layer 4
|
|
|
mantle zone of Pal
|
|
|
reticular complex
|
|
|
r4 part of ventral lateral lemniscal nucleus
|
|
|
r7 part of the dorsal cochlear nucleus
|
|
|
subpallium
|
The subpallium is the ventral telencephalon of a birds brain.
|
|
p3 portion of the substantia nigra pars reticulata
|
|
|
r3 part of parvicellular medial vestibular nucleus
|
|
|
Geniculate group, dorsal thalamus
|
|
|
r9 part of dorsal parvicellular reticular formation
|
|
|
Agranular insular area, dorsal part
|
|
|
Simple lobule, granular layer
|
|
|
Primary somatosensory area, lower limb, layer 2/3
|
|
|
cortex of cerebellar vermis
|
|
|
Ventral anterior-lateral complex of the thalamus
|
|
|
intermediate stratum of AOB
|
|
|
superficial stratum of r3BI
|
|
|
Parabrachial nucleus, lateral division
|
|
|
superficial stratum of r3BL
|
|
|
Endopiriform nucleus
|
|
|
periventricular stratum of CbH
|
|
|
Postsubiculum, layer 2
|
|
|
Postsubiculum, layer 3
|
|
|
Postsubiculum, layer 1
|
|
|
Primary motor area, Layer 6b
|
|
|
Primary motor area, Layer 6a
|
|
|
Mediodorsal nucleus of thalamus
|
|
|
ventral isthmic part of dorsal raphe nucleus
|
|
|
Koelliker-Fuse nucleus
|
|
|
Paraventricular hypothalamic nucleus, parvicellular division
|
|
|
Primary somatosensory area, lower limb
|
|
|
pallidum (globus pallidus complex)
|
|
|
Anterior amygdalar area
|
|
|
mantle zone of m2Lim
|
|
|
superficial stratum of cerebellar vermis
|
|
|
septohypothalamic nucleus
|
The term septohypothalamic nucleus refers to a group of cells located between the lateral septal nucleus and the anterior commissure in the mouse ( Paxinos-2001 ). Some authors regard it as part of the lateral septal nucleus ( Swanson-1998 ).
|
|
superficial stratum of TTe
|
|
|
lateral part of r3B
|
|
|
superficial stratum of OB
|
|
|
Medial amygdalar nucleus, posteroventral part
|
|
|
m1Lim (VL) part of the periaqueductal gray
|
|
|
periventricular stratum of r2Co
|
|
|
intermediate stratum of r5BM
|
|
|
Nucleus of reunions
|
|
|
Paramedian lobule
|
The anterior portion of the posteroinferior lobule of the cerebellum, the posterior portion being the semilunar lobule inferior; the two are continuous with the tuber of the vermis.
|
|
Lateral reticular nucleus, magnocellular part
|
|
|
r6 (gustatory) part of solitary complex
|
|
|
Medial septal complex
|
|
|
Folium-tuber vermis (VII), granular layer
|
|
|
mantle zone of r6Lim
|
|
|
Parabrachial nucleus, lateral division, dorsal lateral part
|
|
|
r4 part of reticulotegmental nucleus, shell portion
|
|
|
sublayer 6b of FCx
|
|
|
r6 part of posteroventral cochlear nucleus
|
|
|
dorsal cortical nucleus of inferior colliculus
|
|
|
olivary pretectal nucleus
|
Small distinct nucleus in the pretectum of mammals involved in the pupillary light reflect. In rats, it is an olive shaped (anterior) nucleus lying ventral to the brachium of the superior colliculus (Paxinos, The rat nervous system, 2nd ed, 1995, pg. 862). Physiologically, it is identified by neurons sensitive to luminance changes.
|
|
superficial stratum of r1BM
|
|
|
Paragigantocellular reticular nucleus
|
|
|
Field CA1
|
|
|
Field CA3
|
|
|
Field CA2
|
|
|
septostriatal part of the olfactory tuberculum
|
|
|
superficial stratum of p1B
|
|
|
central lateral nucleus
|
|
|
mantle zone of PPaA
|
|
|
mantle zone of POH
|
|
|
r2 part of trigeminal sensory column
|
|
|
Anterior olfactory nucleus, dorsal part
|
|
|
nucleus sagulum, deep part
|
|
|
ventral part of PHyB
|
|
|
mantle zone of r2Lim
|
|
|
mammillary part of THyB
|
|
|
parietal cortex
|
The upper central lobe of the cerebral hemisphere, separated from the temporal lobe below by the lateral sulcus, but continuous at the posterior end of that sulcus, and separated from the frontal lobe by the central sulcus. Behind, it is continuous with the occipital lobe on the lateral surface, but separated from it by the parietooccipital sulcus on the medial surface.
|
|
Tuberomammillary nucleus, ventral part
|
|
|
m1 part of paranigral nucleus
|
|
|
plexiform layer of TuStr
|
|
|
r3 part of anteroventral cochlear nucleus
|
|
|
internal cortical nucleus of inferior colliculus
|
|
|
Primary somatosensory area, nose, layer 6b
|
|
|
Primary somatosensory area, nose, layer 6a
|
|
|
periventricular stratum of m2AD
|
|
|
periventricular stratum of m2AL
|
|
|
layer 6b of PaS
|
|
|
medial mammillary nucleus
|
A component of the mammillary body.
|
|
mantle zone of PO2
|
|
|
mantle zone of PO1
|
|
|
r8 part of basointermediate reticular formation
|
|
|
peduncular nucleus of the stria medullaris
|
|
|
r10 part of external cuneate nucleus
|
|
|
Cerebrum
|
An enlarged anterior or upper part of the brain; especially: the expanded anterior portion of the brain that in higher mammals overlies the rest of the brain, consists of cerebral hemispheres and connecting structures, and is considered to be the seat of conscious mental processes.
|
|
shell of p3ZL
|
|
|
striatal amygdala
|
|
|
mantle zone of SeStr
|
|
|
Primary somatosensory area, nose
|
|
|
Parapyramidal nucleus
|
|
|
Retrosplenial area, ventral part, layer 1
|
|
|
sublayer 6a of InsCx
|
|
|
superficial stratum of DgSe
|
|
|
Retrosplenial area, ventral part, layer 5
|
|
|
red nucleus, parvicellular part
|
|
|
r3 pontine raphe nucleus
|
|
|
Primary somatosensory area, mouth
|
|
|
preoptic telencephalon
|
|
|
paraventricular nucleus, lateral part
|
|
|
r11 part of the trigeminal column
|
|
|
r2 part of nucleus subcoeruleus
|
|
|
intermediate stratum of ITTh
|
|
|
microcellular tegmental nucleus
|
|
|
mantle zone of r5Co
|
|
|
Taenia tecta, ventral part
|
|
|
periventricular stratum of m1AD
|
|
|
Dentate gyrus, polymorph layer
|
|
|
periventricular stratum of m1AL
|
|
|
Lateral vestibular nucleus
|
The one of the four vestibular nuclei on each side of the medulla oblongata that is situated on the inner side of the inferior cerebellar peduncle beneath the floor of the fourth ventricle and that sends fibers down the same side of the spinal cord through the vestibulospinal tract.
|
|
Primary somatosensory area, unassigned, layer 2/3
|
|
|
posteromedial visual area, layer 4
|
|
|
posteromedial visual area, layer 5
|
|
|
rostral ventrolateral reticular area
|
|
|
posteromedial visual area, layer 1
|
|
|
r6 part of gigantocellular reticular area
|
|
|
mantle zone of isBI
|
|
|
Nucleus prepositus
|
|
|
mantle zone of isBM
|
|
|
mantle zone of isBL
|
|
|
internal granular layer of CbHCx
|
|
|
nucleus sagulum, superficial part
|
|
|
intermediate periretromammillary nucleus
|
|
|
Parabrachial nucleus, medial division, external medial part
|
|
|
Main olfactory bulb, granule layer
|
|
|
Nucleus of the posterior commissure
|
|
|
sublayer 6b of PCx
|
|
|
superficial stratum of PO2
|
|
|
superficial stratum of PO1
|
|
|
Field CA2, stratum radiatum
|
|
|
rhombomere 10
|
|
|
rhombomere 11
|
|
|
layer 3 of FCx
|
|
|
layer 3 of PrS
|
|
|
periventricular stratum of Dg
|
|
|
superficial stratum of LPrP
|
|
|
periventricular stratum of r10Tr
|
|
|
lateral part of r4B
|
|
|
r1 part of vestibular nucleus Y
|
|
|
superficial stratum of CoPL
|
|
|
Mus musculus
|
|
|
dorsolateral TG part of the periaqueductal gray
|
|
|
superficial stratum of CoPD
|
|
|
intermediate stratum of r9Tr
|
|
|
Pretectal region
|
Region between dorsal thalamus and optic tectum[pub]. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted].
|
|
superficial stratum of POH
|
|
|
lateral part of the isB
|
|
|
Superior colliculus, sensory related
|
|
|
periventricular stratum of r7Tr
|
|
|
Fundus of striatum
|
|
|
lateral trapezoid nucleus
|
|
|
Central amygdalar nucleus
|
|
|
paraventricular nucleus, dorsal part
|
|
|
layer 2 of AOV cortex
|
|
|
periventricular stratum of the PBC
|
|
|
posteromedial cortical amygdaloid area
|
|
|
Superior vestibular nucleus
|
The one of the four vestibular nuclei on each side of the medulla oblongata that is situated dorsal to the lateral vestibular nucleus at the junction of the floor and lateral wall of the fourth ventricle and that sends ascending fibers to the oculomotor and trochlear nuclei in the cerebrum on the same side of the brain.
|
|
superficial stratum of PHyB-D
|
|
|
r5 part of dorsal parvicellular reticular formation
|
|
|
parvicellular part of Lat
|
|
|
periventricular stratum of r6Tr
|
|
|
superficial stratum of PHyB-P
|
|
|
superficial stratum of PHyB-V
|
|
|
mantle zone of r5BM
|
|
|
r7 alar plate
|
|
|
isthmic basal plate
|
|
|
tectal gray formation
|
|
|
commissural pretectal domain
|
|
|
nucleus incertus
|
|
|
r8 part of dorsal parvicellular reticular formation
|
|
|
Basolateral amygdalar nucleus, posterior part
|
|
|
mantle zone of r5Lim
|
|
|
sublayer 6b of OCx
|
|
|
intermediate stratum of ZIC
|
|
|
Anterior cingulate area, dorsal part, layer 2/3
|
|
|
lateral septal nucleus, intermedio-dorsal part
|
|
|
lateral tuberal nucleus
|
Nerve cell nuclei situated ventrally in the intermediate hypothalamic region, mainly in the lateral hypothalamic area.
|
|
r3 part of lateral pontine nuclei
|
|
|
r5 (gustatory) part of solitary complex
|
|
|
layer 5 of PrS
|
|
|
external cortical nucleus of inferior colliculus
|
|
|
Superior colliculus, optic layer
|
|
|
superficial stratum of Mam
|
|
|
lateral posterior nucleus
|
A narrow strip of cell groups on the dorsomedial surface of the thalamus. It includes the lateral dorsal nucleus, lateral posterior nucleus, and the PULVINAR.
|
|
Posterolateral visual area, layer 5
|
|
|
periventricular stratum of SeDg
|
|
|
intermediate stratum of SeDg
|
|
|
Medulla
|
|
|
r5 part of spinal vestibular nucleus
|
|
|
Posterior complex of the thalamus
|
|
|
parastrial preoptic nucleus
|
|
|
Retrosplenial area, ventral part, layer 6b
|
|
|
Retrosplenial area, ventral part, layer 6a
|
|
|
periventricular stratum of r7BM
|
|
|
layer 4 of OCx
|
|
|
periventricular stratum of r9BM
|
|
|
intermediate stratum of p1B
|
|
|
ventral part of THyB
|
|
|
paraterete nucleus
|
|
|
superficial stratum of r6BL
|
|
|
r7 part of spinal trigeminal nucleus, interpolar part
|
|
|
Anterior olfactory nucleus, external part
|
|
|
septostriatal transition area (accumbens)
|
|
|
Cuneate nucleus
|
One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted].
|
|
r8 (gustatory) part of solitary complex
|
|
|
r7 part of nucleus prepositus
|
|
|
Triangular nucleus of septum
|
|
|
r6 part of dorsal cochlear nucleus
|
|
|
dorsal subnucleus of MG
|
|
|
intermediate stratum of r8Tr
|
|
|
dorsolateral part of m1A
|
|
|
mantle zone of THyB-D
|
|
|
Interbrain
|
The posterior subdivision of the forebrain.
|
|
medial (fastigial) cerebellar nucleus
|
|
|
periventricular stratum of r5Tr
|
|
|
periventricular stratum of r9Tr
|
|
|
intermediate stratum of TTe
|
|
|
superficial stratum of the Fc
|
|
|
Midbrain, motor related
|
|
|
substantia nigra compacta, isthmic part
|
|
|
mantle zone of r4Ve
|
|
|
Rhomboid nucleus
|
One of the median nuclei of the thalamus, bordering the third ventricle and ventral to the central medial nucleus.
|
|
r8 part of spinal vestibular nucleus
|
|
|
Lingula (I), molecular layer
|
|
|
r6 part of rostral ventromedial reticular area
|
|
|
preopto-hypothalamic area
|
|
|
Dorsal cochlear nucleus
|
The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted].
|
|
mantle zone of p2ZL
|
|
|
dorsal part of m2A
|
|
|
Medullary reticular nucleus, dorsal part
|
|
|
r8 part of lateral reticular nucleus
|
|
|
mantle zone of THyB-V
|
|
|
Striatum dorsal region
|
|
|
intermediate part of THyB
|
|
|
superficial gray layer of SC
|
|
|
mantle zone of THyB-P
|
|
|
Ventral posterolateral nucleus of the thalamus, parvicellular part
|
|
|
Purkinje cell layer of CbVCx
|
|
|
mantle zone of THyB-I
|
|
|
superficial stratum of p2B
|
|
|
Basolateral amygdalar nucleus, ventral part
|
|
|
intermediate gray layer of SC
|
|
|
superficial stratum of r1BI
|
|
|
superficial stratum of r1BL
|
|
|
Cortical amygdalar area, anterior part, layer 2
|
|
|
periventricular stratum of TPaA
|
|
|
r2 basal plate
|
|
|
Pallidum, caudal region
|
|
|
superficial stratum of TPaA
|
|
|
periventricular mantle of isBM
|
|
|
Medullary reticular nucleus, ventral part
|
|
|
Inferior olivary complex
|
A folded band of gray matter that encloses a white core (hilum nuclei olivaris inferioris) and that produces the elevation called the oliva on the medulla oblongata. It is a nuclear complex that receives heavy projections from the spinal cord, mesencephalon, and cerebral cortex and projects fibers via the contralateral inferior cerebellar peduncle, mostly to the neocerebellum, with a few going to the vermis.
|
|
peduncular (caudal) hypothalamus
|
|
|
basointermediate isthmic reticular formation
|
|
|
Prelimbic area, layer 2/3
|
|
|
mantle zone of r5BL
|
|
|
septodiagonal transition area
|
|
|
mantle zone of r5BI
|
|
|
r2 part of principal trigeminal sensory nucleus
|
|
|
ventral reuniens nucleus
|
|
|
intermediate stratum of r7Lim
|
|
|
rostral secondary prosencephalon
|
|
|
mantle zone of r2Ve
|
|
|
lateral IC periaqueductal gray
|
|
|
OB mitral cell layer
|
|
|
intermediate stratum of APal
|
|
|
r3 part of medial pontine nuclei
|
|
|
layer 2 of LOT
|
|
|
Nodulus (X), granular layer
|
|
|
Primary somatosensory area, lower limb, layer 4
|
|
|
Primary somatosensory area, lower limb, layer 5
|
|
|
Primary somatosensory area, lower limb, layer 1
|
|
|
r3 part of trigeminal sensory column
|
|
|
dorsolateral part of Med
|
|
|
intermediate stratum of PalSe
|
|
|
Supplemental somatosensory area, layer 6b
|
|
|
superficial stratum of r1Tr
|
|
|
submedius thalamic nucleus
|
|
|
Supraoptic nucleus
|
A sharply defined nucleus of nerve cells in the anterior hypothalamic region, immediately above the lateral part of the optic chiasm; many of its cells are neurosecretory in function, secreting vasopressin, which is carried to the neurohypophysis (posterior pituitary) by the fibers of the supraopticohypophysial tract; other cells are osmoreceptors, which respond to increased osmotic pressure to signal the release of vasopressin by the neurohypophysis.
|
|
medial part of MPO
|
|
|
r4 part of dorsal cochlear nucleus
|
|
|
molecular layer of CbHCx
|
|
|
hippocampus (cortex Ammonis)
|
|
|
r5 basal plate
|
|
|
Central amygdalar nucleus, capsular part
|
|
|
Barrington's nucleus
|
|
|
medial trapezoid nucleus
|
|
|
isthmic part of the intermediate lateral lemniscal nucleus
|
|
|
parasubthalamic nucleus (migrated)
|
|
|
Posterior limiting nucleus of the thalamus
|
|
|
dorsal pallium/isocortex
|
|
|
Retrosplenial area, dorsal part, layer 5
|
|
|
Retrosplenial area, dorsal part, layer 1
|
|
|
ventral part of JcP
|
|
|
r9 portion of ambiguous motor nucleus (postmigratory)
|
|
|
Infralimbic area, layer 6a
|
|
|
Infralimbic area
|
|
|
Superior olivary complex, periolivary region
|
|
|
core of T-DMH
|
|
|
Lobule III, granular layer
|
|
|
superficial stratum of IC
|
|
|
AOB, granular layer
|
|
|
Medial preoptic nucleus, lateral part
|
|
|
pallidal septum
|
|
|
island of Calleja major
|
|
|
intermediate stratum of r8Lim
|
|
|
Superior colliculus, motor related
|
|
|
posteromedial visual area
|
|
|
Ectorhinal area/Layer 6a
|
|
|
intermediate stratum of r7BM
|
|
|
intermediate stratum of r7BL
|
|
|
septopallidal shell area
|
|
|
intermediate stratum of r7BI
|
|
|
Bed nuclei of the stria terminalis, posterior division, transverse nucleus
|
|
|
reticular formation of JcPL
|
|
|
mantle zone of VPrP
|
|
|
CoPV part of the periaqueductal gray
|
|
|
External cuneate nucleus
|
|
|
ventral tier of thalamus
|
|
|
ventral posterolateral nucleus
|
The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted].
|
|
medial geniculate nucleus
|
The medial geniculate nucleus is a nucleus of the thalamus that acts as a relay for auditory information. It receives its input from the inferior colliculus and sends information out to the auditory cortex. Nucleus within the medial geniculate body.
|
|
Dorsomedial nucleus of the hypothalamus, posterior part
|
|
|
Field CA2, stratum pyramidale
|
|
|
hilus of the DG
|
|
|
intermediate mantle of isBM
|
|
|
lateral superior olive
|
|
|
Olfactory tubercle, pyramidal layer
|
|
|
Superior colliculus, motor related, deep gray layer
|
|
|
lateral septal nucleus, intermedio-intermediate part
|
|
|
periventricular stratum of m1B
|
|
|
Hippocampal formation
|
Hippocampus (proper) plus dentate gyrus and subiculum[definition derived from NIF comments and ontology alignment].
|
|
lateropallial prepiriform area
|
|
|
isthmic roof plate
|
|
|
r3 part of dorsal cochlear nucleus
|
|
|
medial preoptic nucleus
|
The medial preoptic nucleus is bounded laterally by the lateral preoptic nucleus, and medially by the preoptic periventricular nucleus. It releases gonadotropin-releasing hormone, controls copulation in males, and is larger in males than in females.[WP,unvetted].
|
|
amygdalohippocampal area
|
A cytoarchitecturally defined portion of the periamygdalar area and the cortical amygdalar nucleus at the caudal extreme of the amygdala.
|
|
Entorhinal area, medial part, ventral zone
|
|
|
Ventromedial hypothalamic nucleus, dorsomedial part
|
|
|
superficial stratum of m2B
|
|
|
superficial stratum of p3B
|
|
|
Striatum
|
Either of a pair of masses of nervous tissue within the brain that contain two large nuclei of gray matter separated by sheets of white matter.
|
|
liminal part of alar p2
|
|
|
liminal part of alar p1
|
|
|
peduncular part of dorsomedial hypothalamic nucleus
|
|
|
superficial stratum of r6Co
|
|
|
r2 part of ventral lateral lemniscal nucleus
|
|
|
Bed nucleus of the accessory olfactory tract
|
|
|
intermediate stratum of SeStr
|
|
|
layer 5 of CCx
|
|
|
layer 4 of FCx
|
|
|
r8 portion of the hypoglossal motor nucleus
|
|
|
r10 part of basomedial reticular formation
|
|
|
mantle zone of CA
|
|
|
Nucleus of the optic tract
|
|
|
liminal part of alar r1
|
|
|
abducens motor nucleus
|
|
|
Posterodorsal preoptic nucleus
|
|
|
Lateral group of the dorsal thalamus
|
|
|
layer 2 of RSC
|
|
|
Interanteromedial nucleus of the thalamus
|
|
|
Perireunensis nucleus
|
|
|
periventricular stratum of TG
|
|
|
m1Lim part of the midbrain reticular formation
|
|
|
subpallial septum
|
|
|
r8 portion of ambiguous motor nucleus
|
|
|
prethalamic tegmentum
|
|
|
caudal zona incerta
|
|
|
central part of VMH
|
|
|
intermediate stratum of p2ZL
|
|
|
dorsomedial preoptic area, superficial part
|
|
|
Spinal nucleus of the trigeminal, caudal part
|
|
|
Anterior olfactory nucleus, medial part
|
|
|
Somatomotor areas
|
|
|
Superior colliculus, motor related, intermediate gray layer, sublayer a
|
|
|
Superior colliculus, motor related, intermediate gray layer, sublayer c
|
|
|
Superior colliculus, motor related, intermediate gray layer, sublayer b
|
|
|
intermediate part of r5B
|
|
|
lateral part of r10B
|
|
|
Medial geniculate complex, dorsal part
|
|
|
Bed nuclei of the stria terminalis, anterior division, rhomboid nucleus
|
|
|
prethalamic eminence
|
|
|
r1 part of lateral pontine nuclei
|
|
|
Primary somatosensory area, barrel field
|
|
|
r7 (gustatory) part of solitary complex
|
|
|
Lateral septal nucleus, rostral (rostroventral) part
|
|
|
Nucleus of Darkschewitsch
|
|
|
Orbital area, ventrolateral part, layer 2/3
|
|
|
Parabrachial nucleus
|
A nucleus of the parabrachial area, which in the human brain is a horseshoe-shaped strip of gray matter comprising the Kölliker-Fuse nucleus, the lateral parabrachial nucleus and the medial parabrachial nucleus.
|
|
intermediate stratum of r7Tr
|
|
|
Bed nuclei of the stria terminalis, posterior division, strial extension
|
|
|
superficial stratum of TSPaA
|
|
|
Ventromedial hypothalamic nucleus, central part
|
|
|
Accessory facial motor nucleus
|
|
|
Nodulus (X), molecular layer
|
|
|
layer 3 of CCx
|
|
|
liminal part of r2 alar plate
|
|
|
Gustatory areas, layer 6b
|
|
|
Gustatory areas, layer 6a
|
|
|
Primary somatosensory area, lower limb, layer 6a
|
|
|
Primary somatosensory area, lower limb, layer 6b
|
|
|
upper basal perifornical nucleus
|
|
|
lateral part of r2B
|
|
|
cerebellar nuclei of CbV
|
|
|
layer 4 of PaS
|
|
|
JcPL part of the periaqueductal gray
|
|
|
Entorhinal area, medial part, dorsal zone, layer 6
|
|
|
Entorhinal area, medial part, dorsal zone, layer 4
|
|
|
Entorhinal area, medial part, dorsal zone, layer 5
|
|
|
Entorhinal area, medial part, dorsal zone, layer 2
|
|
|
Entorhinal area, medial part, dorsal zone, layer 3
|
|
|
Entorhinal area, medial part, dorsal zone, layer 1
|
|
|
m2 part of paranigral nucleus
|
|
|
ventral lateral nucleus
|
|
|
Paragigantocellular reticular nucleus, dorsal part
|
|
|
isthmus proper
|
|
|
Hypothalamic lateral zone
|
|
|
mantle zone of PrS
|
|
|
Anterior cingulate area, dorsal part, layer 1
|
|
|
Nucleus of the lateral lemniscus
|
|
|
periventricular stratum of r6Ve
|
|
|
striatal septum
|
|
|
medial part of r10B
|
|
|
Pons, motor related
|
|
|
Lateral septal nucleus
|
Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981).
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mantle zone of r9Ve
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medial amygdala, posterodorsal part
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r6 part of dorsal parvicellular reticular formation
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Dorsal premammillary nucleus
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subthalamic nucleus (migrated)
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r6 part of the basolateral reticular formation
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r10 part of the vestibular column
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mantle zone of r10Lim
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intermediate part of StrSe
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Orbital area, medial part
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periventricular stratum of m2ADL
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Lobule II, granular layer
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terminal hypothalamus (rostral hypothalamus)
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r9 part of ventral parvicellular reticular formation
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medial part of r8B
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Anterodorsal preoptic nucleus
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superficial stratum of Ist
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Spinal nucleus of the trigeminal, oral part, caudal dorsomedial part
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Pallidum, ventral region
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lateral part of alar p3
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Primary somatosensory area, upper limb, layer 1
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ventrolateral part of m2A
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Primary somatosensory area, upper limb, layer 5
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Primary somatosensory area, upper limb, layer 4
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Posterolateral visual area, layer 6b
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Posterolateral visual area, layer 6a
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submammillothalamic nucleus
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intermediate stratum of m2ADL
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Mammillary body
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White fibrous tissue that replaces the regressing corpus luteum in the human ovary in the latter half of pregnancy, or soon after ovulation when pregnancy does not supervene.
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r7 part of cochlear column
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preoptic alar plate
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Lateral terminal nucleus of the accessory optic tract
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p3 part of the ZL core
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Anterolateral visual area, layer 6a
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Anterolateral visual area, layer 6b
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mantle zone of Mam
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Medial amygdalar nucleus
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Locus ceruleus
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Supratrigeminal nucleus
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r3 roof plate
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preopto-hypothalamic band
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Medial amygdalar nucleus, anterodorsal part
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mantle zone of Str
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Substantia innominata
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Nerve tissue immediately inferior to the anterior perforated substance, and anterior to the globus pallidus and ansa lenticularis.
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Superior olivary complex, lateral part
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Olfactory areas
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dorsolateral SC part of the periaqueductal gray
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intermediate stratum of r9BM
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Main olfactory bulb, outer plexiform layer
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mantle zone of r8Ve
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periventricular stratum of r9Lim
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lateropallial amygdalopiriform area
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Cortical amygdalar area
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r2 part of cochlear sensory column
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superficial stratum of r3Lim
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intermediate stratum of r8Ve
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superficial stratum of cerebellar hemisphere
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dorsal part of JcP
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first (dorsal) preoptic domain
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frontal cortex
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Front part of the brain, involved in planning, organizing, problem solving, selective attention, personality and a variety of higher cognitive functions including behavior and emotions.
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Presubiculum, layer 1
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Presubiculum, layer 2
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Presubiculum, layer 3
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mantle zone of r3Co
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layer 1 of FCx
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reticular nucleus
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periventricular stratum of r5Ve
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periventricular stratum of r7Co
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deep white layer of SC
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oculomotor nucleus, main part
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mediodorsal nucleus
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r6 part of the vestibular column
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intermediate part of r4B
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dorsal lateral geniculate nucleus
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The main division of the lateral geniculate body; consists of two magnocellular layers [TA] (strata magnocellularia [TA]) and four parvocellular layers [TA] (strata parvocellularia [TA]) and serves as a processing station in the major pathway from the retina to the cerebral cortex, receiving fibers from the optic tract and giving rise to the geniculocalcarine radiation to the visual cortex in the occipital lobe.
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p2 portion of the parabrachial pigmented nucleus
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periventricular stratum of r9Ve
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mantle zone of r4Tr
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parabrachial part of the periaqueductal gray
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Taenia tecta, ventral part, layer 2
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Taenia tecta, ventral part, layer 3
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Cochlear nuclei
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Taenia tecta, ventral part, layer 1
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mantle zone of r8BL
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layer 4 of ERCx
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superficial stratum of TG
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Superior central nucleus raphe, lateral part
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r2 part of trigeminal transition zone
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layer 1 of InsCx
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Central amygdalar nucleus, lateral part
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mantle zone of LAP
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central nucleus of the inferior colliculus
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Thalamus, sensory-motor cortex related
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Anteromedial visual area, layer 2/3
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Pons
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A broad mass of chiefly transverse nerve fibers conspicuous on the ventral surface of the brain of man and lower mammals at the anterior end of the medulla oblongata.
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mantle zone of r6Ve
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Pons, behavioral state related
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habenula (old epithalamus)
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superficial stratum of m1B
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mantle zone of OB
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Anteromedial nucleus, dorsal part
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ethmoid nucleus
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lateral part of r1B
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intermediate stratum of SePal
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Lateral posterior nucleus of the thalamus
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intermediate part of PHyB
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r7 part of the nucleus of Roller
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parvicellular (lateral) subparafascicular nucleus
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r5 part of dorsal cochlear nucleus
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ventral pallium
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The pallial region located next to the pallium-subpallium boundary.
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Cortical plate
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The outer neural tube region in which post-mitotic neuroblasts migrate along radial glia to form the adult cortical layers[MP].
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Inferior colliculus, central nucleus
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periventricular stratum of r1Lim
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Cortical amygdalar area, posterior part, lateral zone, layer 2
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Cortical amygdalar area, posterior part, lateral zone, layer 3
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Cortical amygdalar area, posterior part, lateral zone, layer 1
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Folium-tuber vermis (VII), molecular layer
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Principal sensory nucleus of the trigeminal
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superficial stratum of r5Tr
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alar plate of evaginated telencephalic vesicle
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layer 6 of OCx
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dorsal paracommissural tectal nucleus, m1 part
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Nucleus of the solitary tract
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Paraventricular hypothalamic nucleus, magnocellular division, posterior magnocellular part
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lower dorsal perifornical nucleus
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ventral entopeduncular nucleus
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Pyramus (VIII), granular layer
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ventral nuclei
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Spinal nucleus of the trigeminal, interpolar part
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liminal part of alar isthmus
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Paraventricular nucleus of the thalamus
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layer 1 of RSC
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Primary somatosensory area, mouth, layer 2/3
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r2 part of basointermediate reticular formation
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Superior colliculus, motor related, intermediate gray layer
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posterior paraventricular nucleus
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The posterior of the two nuclei paraventriculares thalami.
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reticular formation of CoPD
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intermediate stratum of TPaA
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intermediate stratum of r3Tr
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Anteromedial visual area, layer 4
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episupraoptic nucleus
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reticular formation of CoPL
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Anteromedial visual area, layer 1
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r2 part of prepontine raphe nucleus
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Primary somatosensory area, mouth, layer 6a
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Primary somatosensory area, mouth, layer 6b
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intermediate part of r8B
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basolateral amygdaloid nucleus, anterior part
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r2 part of dorsal parvicellular reticular formation
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mantle zone of the Fc
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Anterior hypothalamic nucleus
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A nucleus of nerve cells in the anterior hypothalamic region.
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superficial stratum of r10Ve
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layer 5 of PaS
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Parasolitary nucleus
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Ventral group of the dorsal thalamus
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intermediate stratum of r10Lim
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Dopaminergic A13 group
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superficial stratum of r7Ve
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periventricular stratum of VTTh
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r7 part of parvocellular medial vestibular nucleus
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Hypothalamus
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The ventral part of the diencephalon that forms the floor and part of the lateral wall of the third ventricle. Anatomically, it includes the preoptic area, optic tract, optic chiasm, mammillary bodies, tuber cinereum, infundibulum, and neurohypophysis, but for physiological purposes the neurohypophysis is considered a distinct structure. The hypothalamus may be divided into five regions or areas (area hypothalamica rostralis, area hypothalamica dorsalis, area hypothalamica intermedia, area hypothalamica lateralis and area hypothalamica posterior) or into three longitudinal zones (periventricular zone, medial zone, and lateral zone). The hypothalamic nuclei constitute that part of the corticodiencephalic mechanism that activates, controls and integrates the peripheral autonomic mechanisms, endocrine activity, and many somatic functions, e.g., a general regulation of water balance, body temperature, sleep, and food intake, and the development of secondary sex characteristics. The hypothalamus secretes vasopressin and oxytocin, which are stored in the pituitary, as well as many releasing factors (hypophysiotropic hormones), by means of which it exerts control over functions of the adenohypophysis.
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retropontine reticular area
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mantle zone of CCx
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Entorhinal area, lateral part
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r7 part of the basointermediate reticular formation
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isthmic part of mesencephalic trigeminal nucleus
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Lobules IV-V, molecular layer
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Central lateral nucleus of the thalamus
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tegmental field of p3 (Forel's field)
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mantle zone of r3BI
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intermediate stratum of r1Ve
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Medial vestibular nucleus
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The one of the four vestibular nuclei on each side of the medulla oblongata that sends ascending fibers to the oculomotor and trochlear nuclei in the cerebrum on the opposite side of the brain and sends descending fibers down both sides of the spinal cord to synapse with motor neurons of the ventral roots.
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mantle zone of r3BL
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mantle zone of r3BM
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intermediate stratum of DTTh
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ventral tuberomammillary nucleus, superficial part (histaminergic)
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periventricular stratum of PPaA
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terete nucleus
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bed nucleus of stria terminalis, lateral amygdaloid division
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r1 part of dorsal parvicellular reticular formation
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Red nucleus
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Large round nucleus located in the midbrain tegmentum, consisting of a magnocellular and parvicellular portion in most species studied.
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layer 3 of ERCx
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Secondary motor area, layer 6a
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Secondary motor area, layer 6b
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periventricular stratum of ITTh
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Piriform area, molecular layer
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Main olfactory bulb, inner plexiform layer
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Anterolateral visual area
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collicular (rostral) midbrain tectum
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Temporal association areas, layer 5
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r7 part of basolateral reticular formation
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Pallidum
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The smaller and more medial part of the lentiform nucleus of the brain, separated from the putamen by the lateral medullary lamina. In official anatomic nomenclature, it is divided by the medial medullary lamina into two parts, lateral and medial, both of which have extensive connections with the corpus striatum, thalamus, and mesencephalon. The paleostriatum is the phylogenetically older part of the corpus striatum represented by the globus pallidus.
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layer 5 of OCx
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Cortical amygdalar area, anterior part, layer 1
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Basomedial amygdalar nucleus, anterior part
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r9 part of parvocellular medial vestibular nucleus
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layer 4 of PCx
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Infralimbic area, layer 6b
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Cortical amygdalar area, posterior part, medial zone
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r5 part of A5 noradrenergic cell group
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intermediate stratum of m2Lim
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Midbrain raphe nuclei
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Midline nuclei found in the midbrain, includes the dorsal raphe nucleus and the rostral linear nucleus of raphe.
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dorsal part of m1A
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superficial stratum of r8Tr
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alar part of peduncular hypothalamus
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paraventricular nucleus, cap part
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Field CA1, stratum oriens
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r10 part of basointermediate reticular formation
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navicular nucleus
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Field CA3, stratum lucidum
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nucleus of the inferior collicular brachium, caudal part
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mantle zone of S
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r4 part of cochlear sensory column
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core part of the anterobasal nucleus
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mantle zone of JcPD
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Field CA3, pyramidal layer
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Primary visual area, layer 1
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periventricular stratum of the VAP
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Primary visual area, layer 4
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Primary visual area, layer 5
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mantle zone of JcPL
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mantle zone of JcPV
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r2 part of basomedial reticular formation
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r6 part of basointermediate reticular formation
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Magnocellular reticular nucleus
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intermediate stratum of r9BI
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superficial stratum of VPrP
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intermediate stratum of p1Lim
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Posterior parietal association areas, layer 4
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Posterior parietal association areas, layer 5
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r2 part of anteroventral cochlear nucleus
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r9 part of paragigantocellular nucleus
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nucleus of Barrington
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Submedial nucleus of the thalamus
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internal globus pallidus
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intermediate stratum of RMa
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Anterior olfactory nucleus, posteroventral part
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Subparafascicular nucleus, magnocellular part
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Bed nuclei of the stria terminalis, posterior division
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ventrolateral part of alar m1
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Lobule II, molecular layer
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intermediate stratum of r4BI
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lower basal lateral hypothalamic area
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superficial stratum of r6Lim
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intermediate stratum of r4BL
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intermediate stratum of r4BM
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Retrosplenial area, dorsal part, layer 6b
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Retrosplenial area, dorsal part, layer 6a
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Simple lobule
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superficial stratum of PcPV
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superficial stratum of AOV
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Olfactory tubercle, polymorph layer
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superficial stratum of AOB
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bed nucleus of the external capsule
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superficial stratum of AOD
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superficial stratum of PcPL
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superficial stratum of LAP
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Nucleus x
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Nucleus y
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Anteroventral nucleus of thalamus
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intermediate stratum of PHyB-V
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Superior central nucleus raphe
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intermediate part of r7B
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intermediate stratum of PHyB-P
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Globus pallidus, external segment
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anterior part of Int
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intermediate stratum of PHyB-D
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periventricular stratum of r4Co
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intermediate stratum of PHyB-I
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mantle zone of AOB
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posterolateral cortical amygdaloid area
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mantle zone of AOD
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r4 part of lateral vestibular nucleus
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superficial stratum of r3BM
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layer 3 of InsCx
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mantle zone of AOV
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r1 part of basomedial reticular formation
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Cerebral cortex
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The surface layer of gray matter of the cerebrum that functions chiefly in coordination of sensory and motor information.
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JcP contribution to LTL
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Cortical amygdalar area, posterior part
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Medullary reticular nucleus
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r5 part of the oral Sp5 subnucleus
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diencephalon
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The posterior subdivision of the forebrain.
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Anterior hypothalamic nucleus, posterior part
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Nucleus ambiguus
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A region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted].
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r10 part of solitary complex
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r5 alar plate
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Piriform-amygdalar area, polymorph layer
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mantle zone of r10Ve
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m1B part of the periaqueductal gray
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superficial stratum of isLim
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mammillary part of PHyB
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intermediate stratum of r10BI
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parvicellular interstitial nucleus of the posterior commissure
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intermediate stratum of r10BL
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Midbrain reticular nucleus, retrorubral area
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Retrochiasmatic area
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Ventral tegmental area
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Unpaired midbrain region situated in the ventromedial portion of the reticular formation. The VTA is medial to the substantia nigra and ventral to the red nucleus, and extends caudally from the posterior hypothalamus in the diencephalon. The VTA contains dopamine neurons that project to various limbic and cortical areas and is a critical component of the brain's reward circuitry.
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Flocculus, molecular layer
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medial (magnocellular) part of MD
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mantle zone of Hb
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Spinal nucleus of the trigeminal, oral part, ventrolateral part
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Interstitial nucleus of Cajal
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The largest and most prominent of the cell groups of the medial longitudinal fasciculus
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intermediate stratum of OB
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intermediate stratum of m1B
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Anterior cingulate area, ventral part, 6b
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Anterior cingulate area, ventral part, 6a
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preoptic area
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The most anterior part of the hypothalamus, lying adjacent to the lamina terminalis and superior to the optic chiasm, and comprising the lateral and medial preoptic nuclei, the supraoptic and paraventricular nuclei; and the anterior hypothalamic nucleus.
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p1 part of the substantia nigra reticulata
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Primary somatosensory area, unassigned, layer 6a
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posterior intralaminar nucleus
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Primary somatosensory area, unassigned, layer 6b
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mantle zone of TG
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intermediate stratum of isLim
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r3 part of lateral vestibular nucleus
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r9 part of spinal vestibular nucleus
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Bed nuclei of the stria terminalis, anterior division, magnocellular nucleus
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m1AD (DM) part of periaqueductal gray
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layer 4 of CCx
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corticoid layer of TuPal
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intermediate stratum of m2AL
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Intergeniculate leaflet of the lateral geniculate complex
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r3 part of reticulotegmental nucleus, shell portion
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mantle zone of PaS
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Bed nuclei of the stria terminalis, posterior division, principal nucleus
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ventral tuberomammillary nucleus, intermediate part (histaminergic)
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p3 portion of paranigral nucleus
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liminal part of r3 alar plate
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secondary prosencephalon
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Medial geniculate complex, ventral part
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Nucleus ambiguus, dorsal division
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mantle zone of PHyB-D
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mantle zone of p3ZL
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Central medial nucleus of the thalamus
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red nucleus, magnocellular part
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layer 2 of CCx
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periventricular stratum of RMa
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pterigoid muscle trigeminal motor cell group
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ventral paracommissural tectal nucleus, m1 part
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Posterior parietal association areas
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periventricular stratum of Pal
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Infralimbic area, layer 1
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Infralimbic area, layer 2
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Infralimbic area, layer 5
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Parasubthalamic nucleus
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forebrain
|
The anterior of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain that includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and that especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions.
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caudal interpeduncular nucleus
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rostral interstitial nucleus
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superficial stratum of DG
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lateral parabrachial nucleus
|
The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted].
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superficial stratum of CCx (cortical plate/marginal zone)
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Piriform-amygdalar area, pyramidal layer
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Subiculum, dorsal part
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Primary somatosensory area, barrel field, layer 6b
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Primary somatosensory area, barrel field, layer 6a
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medial part of r9B
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Anteroventral preoptic nucleus
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layer 2 of OCx
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mantle zone of APal
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Dorsal motor nucleus of the vagus nerve
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|
Cortical amygdalar area, anterior part
|
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mantle zone of PcPD
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Lateral visual area, layer 6a
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Lateral visual area, layer 6b
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mantle zone of PcPL
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substantia nigra reticulata, isthmic part
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retroreuniens nucleus
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posterior tegmental nucleus
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mantle zone of PcPV
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mantle zone of AHy
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bed nucleus of the stria terminalis, medioseptal division
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zonal layer of SC
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Medial preoptic nucleus, medial part
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Primary visual area
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internal granular layer of CbVCx
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r4 part of posteroventral cochlear nucleus
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Nodulus (X)
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pallidal islands of Calleja
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superficial stratum of Pal
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r9 part of the inferior olive
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layer 1 of AOV cortex
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r7 basal plate
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intermediate stratum of r10BM
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r5 part of basointermediate reticular formation
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superficial stratum of isBI
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Subparaventricular zone
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layer 3 of RSC
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Posterolateral visual area, layer 2/3
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subcuneiform nucleus
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mantle zone of StrSe
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Lateral septal nucleus, ventral part
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intermediate stratum of r5BI
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r3 part of ventral lateral lemniscal nucleus
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vertical nucleus of the diagonal band
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p2 portion of the substantia nigra pars reticulata
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laterodorsal nucleus
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prepontine hindbrain
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superficial stratum of THyB-I
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Paraventricular hypothalamic nucleus, magnocellular division
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superficial stratum of THyB-D
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sublayer 6b of InsCx
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mantle zone of r6BI
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Medial amygdalar nucleus, posterodorsal part, sublayer a
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Medial amygdalar nucleus, posterodorsal part, sublayer b
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Medial amygdalar nucleus, posterodorsal part, sublayer c
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p1 part of parabrachial pigmented nucleus
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mantle zone of r6BL
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Retrosplenial area, dorsal part, layer 2/3
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superficial stratum of THyB-V
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superficial stratum of THyB-P
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Subparafascicular area
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dorsomedial nucleus, terminal part
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mantle zone of TTe
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Ectorhinal area
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superficial stratum of r7BI
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lateral part of alar p2
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mantle zone of PSPa
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m1 (rostral) midbrain tegmentum
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layer 6 of InsCx
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Ventral posteromedial nucleus of the thalamus, parvicellular part
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dorsal part of alar p3
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dorsal part of alar p2
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Paraventricular hypothalamic nucleus, descending division
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layer 6 of CCx
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core of P-DMH
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Crus 1, granular layer
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mantle zone of IC
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intermediate pretectal nucleus
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periventricular stratum of r5BM
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superficial stratum of r3Ve
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r5 part of magnocellular medial vestibular nucleus
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intermediate stratum of r3BL
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para-abducens nucleus
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r4 part of ventral parvicellular reticular formation
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Lateral amygdalar nucleus
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Nucleus of the lateral lemniscus, ventral part
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r9 (gustatory) part of solitary complex
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m2 basal plate
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r2 part of dorsal cochlear nucleus
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Retrosplenial area, dorsal part
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r4 part of parvocellular medial vestibular nucleus
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Orbital area, lateral part
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Medial preoptic area
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Paraflocculus
|
.[MP].
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r10 part of basolateral reticular formation
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parabrachial complex
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superficial stratum of the PBC
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pararubral nucleus, m1 part
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Inferior salivatory nucleus
|
In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted].
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superficial stratum of r5Ve
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intermediate stratum of PPaA
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Spinal nucleus of the trigeminal, oral part, middle dorsomedial part, ventral zone
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Pons, sensory related
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sublayer 6a of PCx
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r5 part of parvocellular medial vestibular nucleus
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p3 portion of parabrachial pigmented nucleus
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Subiculum, ventral part, stratum radiatum
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superficial stratum of r2BM
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dorsal spiriform nucleus
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Zona incerta
|
A narrow layer of gray matter extending throughout most of the diencephalon, ventral to and separated from the thalamus by the thalamic fasciculus and laterally continuous with the reticular nucleus of the thalamus.
|
|
superficial stratum of r2BI
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mantle zone of r7Ve
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mantle zone of ZIC
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Subiculum, dorsal part, pyramidal layer
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lateral part of CoP
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dorsal endopiriform nucleus
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intermediate stratum of r9Lim
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terminal paraventricular area of THyA
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layer 3 of LOT
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Endopiriform nucleus, dorsal part
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r4 part of basointermediate reticular formation
|
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Retrosplenial area, ventral part
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|
|
layer 2 of VPrP cortex
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substantia innominata/basal nucleus, transitional part
|
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mantle zone of PHyB-P
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mantle zone of PHyB-V
|
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mantle zone of PHyB-I
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mantle zone of r1BI
|
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Anterior cingulate area, ventral part
|
|
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mantle zone of r1BL
|
|
|
periventricular stratum of Str
|
|
|
superficial stratum of r7Tr
|
|
|
Anterior olfactory nucleus, layer 1
|
|
|
Hypoglossal nucleus
|
Nucleus forming a longitudinal cell column in the medulla, close beneath the floor of the 4th ventricle, containing motor neurons that innervate the muscles of the tongue (Brodal, Neurological Anatomy, 3rd ed., 1981, pg 453)
|
|
layer 1 of AOD cortex
|
|
|
intercalated amygdaloid nuclei
|
Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)
|
|
Anterior pretectal nucleus
|
|
|
intermediate stratum of JcPD
|
|
|
superficial stratum of SeDg
|
|
|
Retrosplenial area, lateral agranular part, layer 2/3
|
|
|
lateral TG part of the periaqueductal gray
|
|
|
lateral subhabenular nucleus
|
|
|
intermediate stratum of JcPV
|
|
|
Temporal association areas, layer 6a
|
|
|
Nucleus of the solitary tract, lateral part
|
|
|
ventropallial prepiriform area
|
|
|
intermediate stratum of LAP
|
|
|
intermediate stratum of r1Tr
|
|
|
intermediate part of r6B
|
|
|
Striatum ventral region
|
|
|
periventricular stratum of r2Lim
|
|
|
polymorph layer of TuStr
|
|
|
Posterior parietal association areas, layer 2/3
|
|
|
Parabrachial nucleus, lateral division, central lateral part
|
|
|
periventricular stratum of r5Co
|
|
|
Nucleus of the lateral lemniscus, horizontal part
|
|
|
Anterior cingulate area, dorsal part, layer 6b
|
|
|
Anterior cingulate area, dorsal part, layer 6a
|
|
|
Anteroventral periventricular nucleus
|
|
|
r9 basal plate
|
|
|
Uvula (IX), granular layer
|
|
|
intermediate stratum of r5Ve
|
|
|
Primary somatosensory area, trunk, layer 2/3
|
|
|
superficial stratum of ERCx (cortical plate/marginal zone)
|
|
|
anteroventral part of alar thalamus
|
|
|
Midbrain trigeminal nucleus
|
|
|
intermediate stratum of the VAP
|
|
|
rostral periolivary nucleus
|
|
|
rhombomere 2
|
the second transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
rhombomere 3
|
the third transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
intermediate stratum of THyB-I
|
|
|
rhombomere 6
|
the sixth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
Parabrachial nucleus, medial division, medial medial part
|
|
|
rhombomere 4
|
the fourth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
rhombomere 5
|
the fifth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
rhombomere 8
|
the eighth transiently divided segment of the developing rhombencephalon; rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates; rhombomeres are numbered in caudal to rostral order
|
|
dorsolateral isthmic part of the dorsal raphe nucleus
|
|
|
Substantia nigra, compact part
|
|
|
intermediate stratum of THyB-D
|
|
|
striatal part of olfactory tuberculum
|
|
|
r2 alar plate
|
|
|
intermediate stratum of THyB-P
|
|
|
intermediate stratum of THyB-V
|
|
|
Mediodorsal nucleus of the thalamus, central part
|
|
|
Accessory olfactory bulb, glomerular layer
|
|
|
periventricular stratum of r10Lim
|
|
|
deep gray layer of SC
|
|
|
intermediate part of r2B
|
|
|
substantia innominata/basal nucleus
|
|
|
superficial stratum of r6Ve
|
|
|
medial parabrachial nucleus
|
The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted].
|
|
second (ventral) preoptic domain
|
|
|
Medial geniculate complex
|
|
|
parvocellular part of r8LRt
|
|
|
Posterior parietal association areas, layer 1
|
|
|
mantle zone of LPrP
|
|
|
Olfactory tubercle, molecular layer
|
|
|
medial part of the lateral habenular nucleus
|
|
|
Major island of Calleja
|
|
|
r8 part of the vestibular column
|
|
|
superficial stratum of r5BL
|
|
|
periventricular stratum of m2Lim
|
|
|
substantia nigra compacta, m1 part
|
|
|
Piriform area, polymorph layer
|
|
|
superficial stratum of r11Tr
|
|
|
Nucleus of the lateral lemniscus, dorsal part
|
|
|
layer 6a of PaS
|
|
|
r1 part of dorsal raphe nucleus
|
|
|
Dorsomedial nucleus of the hypothalamus, ventral part
|
|
|
intermediate tier of thalamus
|
|
|
Folium-tuber vermis (VII)
|
|
|
temporotympanic muscle trigeminal motor cell group
|
|
|
m2 part of pararubral nucleus
|
|
|
periventricular stratum of p2Lim
|
|
|
r6 part of ventral parvicellular reticular formation
|
|
|
Primary somatosensory area, upper limb, layer 6a
|
|
|
Primary somatosensory area, upper limb, layer 6b
|
|
|
Frontal pole, cerebral cortex
|
|
|
mantle zone of ERCx
|
|
|
Parabrachial nucleus, lateral division, external lateral part
|
|
|
superficial stratum of FCx (cortical plate/marginal zone)
|
|
|
r6 basal plate
|
|
|
intermediate part of r1B
|
|
|
Interposed nucleus
|
|
|
Orbital area, lateral part, layer 1
|
|
|
Orbital area, lateral part, layer 5
|
|
|
intermediate stratum of cerebellar vermis
|
|
|
Tegmental reticular nucleus
|
|
|
subpretectal nucleus
|
|
|
r8 part of parvocellular medial vestibular nucleus
|
|
|
r6 part of paragigantocellular nucleus
|
|
|
layer 1 of LPrP cortex
|
|
|
medial part of r4B
|
|
|
mantle zone of r6Co
|
|
|
r9 portion of the hypoglossal motor nucleus
|
|
|
mantle zone of TSPaA
|
|
|
caudate nucleus
|
One of the centrally-located portions of the brain affected by Huntington's Disease. Speech and swallowing problems arise when this region and another region called the putamen are affected.
|
|
Supramammillary nucleus
|
|
|
Paraflocculus, granular layer
|
|
|
Paramedian lobule, molecular layer
|
|
|
Dorsal part of the lateral geniculate complex
|
|
|
entorhinal cortex
|
The entorhinal cortex (EC) is an important memory center in the brain. In rodents, the EC is located at the caudal end of the temporal lobe. In primates it is located at the rostral end of the temporal lobe and stretches dorsolaterally. It is usually divided into medial and lateral regions with three bands with distinct properties and connectivity running perpendicular across the whole area.
|
|
r8 alar plate
|
|
|
r2 liminal central gray
|
|
|
rostral zona incerta
|
|
|
r3 part of trigeminal transition zone
|
|
|
r8 part of linear nucleus
|
|
|
Entorhinal area, lateral part, layer 2a
|
|
|
Ventromedial hypothalamic nucleus, ventrolateral part
|
|
|
r3 liminal central gray
|
|
|
Nucleus of the solitary tract, commissural part
|
|
|
Bed nuclei of the stria terminalis, anterior division, dorsomedial nucleus
|
|
|
mantle zone of Dg
|
|
|
posterior part of anterior hypothalamic nucleus
|
|
|
r9 part of nucleus of Roller
|
|
|
AOB, outer plexiform layer
|
|
|
intermediate stratum of LPrP
|
|
|
Sublaterodorsal nucleus
|
|
|
medial superior olive
|
|
|
Dorsal peduncular area, layer 2/3
|
|
|
Midline group of the dorsal thalamus
|
|
|
r6 part of ventral gigangocellular reticular area
|
|
|
Pontine reticular nucleus, caudal part
|
|
|
septopallidal part of the olfactory tuberculum
|
|
|
Cerebellar cortex
|
The superficial gray matter of the cerebellum. It consists of three layers, the stratum moleculare, stratum granulosum, and stratum purkinjense.
|
|
layer 5 of InsCx
|
|
|
Spinal nucleus of the trigeminal, oral part
|
|
|
r8 part of basolateral reticular formation
|
|
|
mantle zone of r10Tr
|
|
|
superficial stratum of r5Lim
|
|
|
layer 2 of LPrP cortex
|
|
|
Field CA2, stratum lacunosum-moleculare
|
|
|
r8 part of the trigeminal column
|
|
|
ventral subnucleus of MG
|
|
|
mantle zone of AStr
|
|
|
r4 part of descending trigeminal sensory nucleus, oral part
|
|
|
superficial stratum of r2Co
|
|
|
Dorsal column nuclei
|
|
|
ventral pallidum
|
|
|
pallidal part of olfactory tuberculum
|
|
|
mantle zone of isLim
|
|
|
Superior colliculus, zonal layer
|
|
|
Entorhinal area, medial part, dorsal zone
|
|
|
central layers of TG
|
|
|
intermediate part of r10B
|
|
|
optic fiber layer of SC
|
|
|
Medulla, motor related
|
|
|
Declive (VI)
|
|
|
Parataenial nucleus
|
|
|
intermediate stratum of r9BL
|
|
|
r5 part of posteroventral cochlear nucleus
|
|
|
intermediate stratum of r5Lim
|
|
|
Primary somatosensory area, trunk, layer 1
|
|
|
Primary somatosensory area, trunk, layer 4
|
|
|
Primary somatosensory area, trunk, layer 5
|
|
|
layer 6a of PrS
|
|
|
Subiculum, dorsal part, molecular layer
|
|
|
Orbital area, ventrolateral part, layer 6a
|
|
|
r9 part of basomedial reticular formation
|
|
