| Description | mRNA expression profiles for the NCI-60 panel of cancer cell lines |
| Measurement | gene expression by microarray |
| Association | gene-cell line associations by differential expression of gene across cell lines |
| Category | transcriptomics |
| Resource | BioGPS |
| Citation(s) |
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| Last Updated | 2015 Apr 06 |
| Stats |
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Attribute Similarity
Gene Attribute
Gene Similarity
93 sets of genes with high or low expression in each cell line relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset.
| Gene Set | Description |
|---|---|
| MCF7 | A immortal human breast-derived cell line cell that has the characteristics: Human cell line derived from breast adenocarcinoma. TKG0479 (Deposited from Tohoku Univ.). |
| T3M4 | A immortal human cell line cell that has the characteristics: Pancreatic adenocarcinoma producing CEA. K-ras activated. Cell growth is slow. |
| U20S | |
| HSG | |
| HL60 | Human acute myeloid leukemia established from the peripheral blood of a 35-year-old woman with acute myeloid leukemia (AML FAB M2) in 1976. |
| U118 | Human neuronal glioblastoma (grade III) cell line. |
| GM1600 | |
| GM2313 | |
| PANC1 | |
| SF295 | |
| HCC2998 | |
| HCT116 | Human colon colorectal carcinoma cell line from a male organism. Human colon carcinoma cell line; established from the primary colon carcinoma of an adult man. |
| IOSE80 | |
| MALME 3M | |
| SKOV3 | |
| HEK 293T | |
| RS11846 | |
| RPMI 8226 | |
| OVCAR3 | |
| CCRT CEM | |
| OVCAR5 | |
| OVCAR4 | |
| OVCAR8 | |
| SAOS2 | Human osteogenic sarcoma, established from the primary osteogenic sarcoma of an 11-year-old Caucasian woman in 1973. |
| SF268 | |
| HCT15 | |
| GM2493 | |
| HELA | Human cervix carcinoma established from the epitheloid cervix carcinoma of a 31-year-old black woman in 1951. Later diagnosis changed to adenocarcinoma, first aneuploid, continuously cultured human cell line. |
| K562 | Human chronic myeloid leukemia in blast crisis established from the pleural effusion of a 53-year-old woman with chronic myeloid leukemia (CML) in blast crisis in 1970. |
| MOLT4 | |
| NCVADR RES | |
| UACC257 | |
| huh-7 | HuH-7 is a well differentiated hepatocyte derived cellular carcinoma cell line that was originally taken from a liver tumor in a 57-year-old Japanese male in 1982. The line was established by Nakabayshi, H. and Sato, J. HuH-7 is an immortal cell line of epithelial-like tumorigenic cells. It usually grow in 2D monolayers. |
| COLO205 | |
| U251 | Human glioma cell line. Morphology: glial; Species: human; Tumor: glioma. |
| A361 | |
| MD MB231 | |
| HS578T | |
| T24 | |
| UACC62 | |
| MDA MB435 | Was originally considered to be a breast cancer cell line but has since been identified as a melanoma cell line. |
| SN12C | Human renal cell carcinoma cell line. |
| SNB75 | Human glioblastoma cell line. |
| HT29 | |
| DU145 | A immortal human prostate gland-derived cell line cell that has the characteristics: Human cell line derived from brain metastasis of prostate carcinoma. TKG0604(Deposited from Tohoku Univ.). |
| SHSYSY+RA | |
| HEK293 | Established from a human primary embryonal kidney transformed by adenovirus type 5. |
| A172 | A immortal human brain-derived cell line cell that has the characteristics: Human cell line derived from glioblastoma. TKG0183(Deposited from Tohoku Univ.). |
| A204 | |
| HEK 293 T-rex | |
| RL7 | |
| HOP92 | Non-small cell lung adenocarcinoma cell line. |
| IGROV1 | |
| LOX IMVI | Human melanoma cell line. |
| NCI H226 | |
| RXF393 | Renal cancer cell line. |
| TK10 | TK-10 was derived from a specimen of primary RCC obtained following a left radical nephrectomy in a 43-year-old male on August 21, 1980. |
| HT1080 | |
| 786 | |
| SHSYSY-RA | |
| ACHN | |
| ZR75_1 | |
| SKMEL28 | |
| UO31 | Human renal cancer cell line. |
| U87 | |
| NCI H322M | Human non-small cell lung cancer cell line. |
| SR | |
| SNB19 | |
| M14 | The human melanoma cell line M14 has been established from surgically removed melanoma metastases. |
| JURKAT | Human T cell leukemia, established from the peripheral blood of a 14-year-old boy with acute lymphoblastic leukemia (ALL) at first relapse in 1976; often this cell line is called JM (JURKAT and JM are derived from the same patient and are sister clones), occasionally JM may be a subclone with somewhat divergent features. |
| DLD1 | Human colon adenocarcinoma established from a colorectal adenocarcinoma. |
| SF539 | |
| A549 | Human lung carcinoma established from an explanted lung tumor which was removed from a 58-year-old Caucasian man in 1972; cells were described to induce tumors in athymic mice and to synthesize lecithin. |
| astrocytes | |
| LN18 | Human brain, cerebrum; right temporal lobe, glioblastoma; glioma; grade IV cell line; established from a 65 years old white male. |
| EKVX | Non-small cell lung adenocarcinoma cell line. |
| GM2345 | |
| SKMEL5 | Human caucasian skin melanoma cell line; established from a 24 year old Caucasian female. Derived from: axillary node. |
| CAKI1 | |
| A498 | |
| KM12 | Human colon carcinoma cell line. |
| NCI 460 | |
| U138 | Human glioblastoma cell line; established from a 47 years old human male. |
| GM133 | |
| HEPG2 | Human hepatocellular carcinoma, established from the tumor tissue of a 15-year-old argentine boy with hepatocellular carcinoma in 1975. |
| NCI H23 | |
| SKMEL2 | |
| ALVA31 | Human primary prostate tumor cell line. |
| GM97 | |
| SW620 | |
| HOP62 | Non-small cell lung adenocarcinoma cell line. |
| LNCAP | Human prostate carcinoma, established from the left supraclavicular lymph node metastasis from a 50-year-old man with prostate carcinoma in 1977; cells were described to be androgen-sensitive. |
| ACC3 |
