| Description | RNA-seq gene expression profiles for cell lines from HPA |
| Measurement | gene expression by RNA-seq |
| Association | gene-cell line associations by differential expression of gene across cell lines |
| Category | transcriptomics |
| Resource | Human Protein Atlas |
| Citation(s) | |
| Last Updated | 2015 Apr 06 |
| Stats |
|
Attribute Similarity
Gene Attribute
Gene Similarity
43 sets of genes with high or low expression in each cell line relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset.
| Gene Set | Description |
|---|---|
| u87 | |
| shsy5y | |
| rpmi8226 | |
| t47d | |
| bewo | A immortal human cell line cell that has the characteristics: It was initiated from a malignant gestational choriocarcinoma of the fetal placenta. Need to check response to hormones before use. Back up culture of ECA2687. |
| hela | Human cervix carcinoma established from the epitheloid cervix carcinoma of a 31-year-old black woman in 1951. Later diagnosis changed to adenocarcinoma, first aneuploid, continuously cultured human cell line. |
| capan2 | |
| u138mg | Human glioblastoma cell line; established from a 47 years old human male. |
| a549 | Human lung carcinoma established from an explanted lung tumor which was removed from a 58-year-old Caucasian man in 1972; cells were described to induce tumors in athymic mice and to synthesize lecithin. |
| hmc1 | Human mast cell line. |
| ntera2 | A human embryonal carcinoma (EC) stem cell line used as a model system for the study of neuronal differentiation |
| molt4 | |
| caco2 | A immortal human colon-derived cell line cell that has the characteristics: Human colon carcinoma. Backup of ECA86010202. |
| u937 | |
| u26684 | cell line derived from haematopoietic_and_lymphoid_tissue |
| hel | Human erythroleukemia, established from the peripheral blood of a 30-year-old man with erythroleukemia (AML M6) in relapse (after treatment for Hodgkin's disease) in 1980; cells were described to be capable of spontaneous and induced globin synthesis. |
| hek293 | Established from a human primary embryonal kidney transformed by adenovirus type 5. |
| u698 | cell line derived from haematopoietic_and_lymphoid_tissue |
| nes | nestin|This gene encodes a member of the intermediate filament protein family and is expressed primarily in nerve cells. [provided by RefSeq, Sep 2011] |
| skmel30 | Human melanoma derived from tumor tissue (subcutis metastasis) of a 67-year-old Caucasian man with malignant melanoma in 1975. |
| karpas707 | cell line derived from haematopoietic_and_lymphoid_tissue |
| hepg2 | Human hepatocellular carcinoma, established from the tumor tissue of a 15-year-old argentine boy with hepatocellular carcinoma in 1975. |
| u266 | Human multiple myeloma cell line; established from the peripheral blood of a 53-year-old man with IgE-secreting myeloma (refractory, terminal) in 1968. |
| k562 | Human chronic myeloid leukemia in blast crisis established from the pleural effusion of a 53-year-old woman with chronic myeloid leukemia (CML) in blast crisis in 1970. |
| bj | |
| nb4 | |
| rt4 | Human urinary bladder transitional cell carcinoma; established from a recurrent well-differentiated transitional papillary tumor of the urinary bladder (clinical stage T2, histological grade G1, treated with gold grains 2 years earlier and diathermy after recurrence 10 months later) of a 63-year-old man in 1968. |
| a431 | Human epidermoid carcinoma established from the solid tumor of an 85-year-old woman; cells were reported to have large numbers of EGF binding sites; cell line was used as indicator cell line for anti-TGF binding. |
| daudi | A immortal human blood cell line cell that has the characteristics: Burkitt's lymphoma. Sensitive to lymphokine-activated killer cells but resistant to natural killer cells. Back up culture of ECA3011. |
| sclc21h | disease: carcinoma, small cell |
| u2197 | |
| pc3 | |
| hl60 | Human acute myeloid leukemia established from the peripheral blood of a 35-year-old woman with acute myeloid leukemia (AML FAB M2) in 1976. |
| mcf7 | A immortal human breast-derived cell line cell that has the characteristics: Human cell line derived from breast adenocarcinoma. TKG0479 (Deposited from Tohoku Univ.). |
| wm115 | |
| rh30 | Human alveolar rhabdomyosarcoma cell line. |
| thp1 | |
| km3 | Human pre-B lymphocytic leukemia cell line. |
| efo21 | disease: cystoadenocarcinoma |
| u251mg | Human glioma cell line. Morphology: glial; Species: human; Tumor: glioma. |
| an3ca | |
| hacat | |
| skbr3 | Human breast adenocarcinoma cell line; established from a caucasian female 43 years old. Morphology: epithelial-like. |
