Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles Dataset

Description DNA methylation profiles for primary cell types and tissues
Measurement DNA methylation by bisulfite sequencing, MeDIP-seq, or MRE-seq
Association gene-cell type or tissue associations by differential methylation of gene across cell types and tissues
Category genomics
Resource Roadmap Epigenomics
Citation(s)
Last Updated
Stats
  1. 13690 genes
  2. 24 cell type or tissues
  3. 49514 gene-cell type or tissue associations

Data Access

API
Script

Visualizations

  • Attribute Similarity

  • Dataset

  • Gene Similarity

cell type or tissue Gene Sets

24 sets of genes with high or low DNA methylation in each cell type or tissue relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.

Gene Set Description
Duodenum Mucosa The duodenal mucosa (and that of the rest of the intestines) is classified as simple columnar. The cells rest on a basal lamina, which you may be able to make out in this image as a bright line underneath the cells. They sit over the lamina propria, the loose collagenous CT, filled with cells, that constitutes the core of each villus.
ES-I3 Cells
ES-WA7 Cells
Fetal Brain Male
Fetal Heart
Fetal Kidney
Fetal Lung
H1 Cells
H9 Cells
hESC Derived CD184+ Endoderm Cultured Cells
iPS-18 Cells
iPS-20b Cells
Primary B cells from cord blood
Primary hematopoietic stem cells
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01480
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01508
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01536
Primary hematopoietic stem cells G-CSF-mobilized Female RO_01549
Primary hematopoietic stem cells G-CSF-mobilized Male
Primary T cells from cord blood
Rectal Mucosa Donor 31
Skeletal Muscle Female
Skeletal Muscle Male
Stomach Smooth Muscle
Funding