WikiPathways Pathways 2014 Dataset (Archived)

Description Sets of proteins participating in pathways from WikiPathways
Measurement association by literature curation
Association protein-pathway associations from curated pathways
Category structural or functional annotations
Resource WikiPathways
Citation(s)
Last Updated 2014 Dec 17
Stats
  1. 6093 genes
  2. 427 pathways
  3. 22242 gene-pathway associations

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pathway Gene Sets

427 sets of proteins participating in pathways from the WikiPathways Pathways 2014 dataset.

Gene Set Description
Apoptosis(Homo sapiens)
Regulation of Cardiac Hypertrophy by miR-208(Mus musculus)
Senescence and Autophagy(Homo sapiens)
Vitamin A and Carotenoid Metabolism(Homo sapiens)
IL1 and megakaryotyces in obesity(Homo sapiens)
Chemokine signaling pathway(Mus musculus)
Hypertrophy Model(Mus musculus)
SIDS Susceptibility Pathways(Homo sapiens)
Glycolysis and Gluconeogenesis(Mus musculus)
Polyol Pathway(Homo sapiens)
Glycogen Metabolism(Homo sapiens)
Diclofenac Metabolic Pathway(Homo sapiens)
Gastric cancer network 2(Homo sapiens)
Sphingolipid Metabolism(Homo sapiens)
Peptide GPCRs(Mus musculus)
Tamoxifen metabolism(Homo sapiens)
Complement Activation, Classical Pathway(Homo sapiens)
TNF alpha Signaling Pathway(Homo sapiens)
Hypothetical Network for Drug Addiction(Homo sapiens)
Apoptosis(Mus musculus)
TCA Cycle Nutrient Utilization and Invasiveness of Ovarian Cancer(Homo sapiens)
ID signaling pathway(Homo sapiens)
Hair Follicle Development: Induction (Part 1 of 3)(Homo sapiens)
GPCRs, Class B Secretin-like(Mus musculus)
SIDS Susceptibility Pathways(Mus musculus)
miR-1 in cardiac development(Mus musculus)
Trans-sulfuration and one carbon metabolism(Homo sapiens)
Biogenic Amine Synthesis(Mus musculus)
Transcriptional activation by NRF2(Homo sapiens)
Vitamin D Metabolism(Homo sapiens)
Wnt Signaling Pathway(Homo sapiens)
Osteoclast Signaling(Homo sapiens)
G13 Signaling Pathway(Mus musculus)
EPO Receptor Signaling(Homo sapiens)
G13 Signaling Pathway(Homo sapiens)
FSH signaling pathway(Homo sapiens)
Glutathione and one carbon metabolism(Mus musculus)
RB in Cancer(Homo sapiens)
Arylhydrocarbon receptor (AhR) signaling pathway(Homo sapiens)
Felbamate Metabolism(Homo sapiens)
One carbon metabolism and related pathways(Mus musculus)
Electron Transport Chain(Homo sapiens)
TWEAK Signaling Pathway(Homo sapiens)
BDNF signaling pathway(Homo sapiens)
AMPK Signaling(Homo sapiens)
Dopamine metabolism(Homo sapiens)
ESC Pluripotency Pathways(Mus musculus)
FAS pathway and Stress induction of HSP regulation(Homo sapiens)
Allograft Rejection(Homo sapiens)
Integrin-mediated Cell Adhesion(Homo sapiens)
Sulfation Biotransformation Reaction(Homo sapiens)
Estrogen metabolism(Homo sapiens)
Fluoropyrimidine Activity(Homo sapiens)
Triacylglyceride Synthesis(Mus musculus)
Prostaglandin Synthesis and Regulation(Homo sapiens)
Serotonin and anxiety(Mus musculus)
G Protein Signaling Pathways(Homo sapiens)
Histone modifications(Mus musculus)
Mismatch repair(Mus musculus)
Ptf1a related regulatory pathway(Mus musculus)
miRNAs involved in DNA damage response(Homo sapiens)
RNA interference(Homo sapiens)
Id Signaling Pathway(Mus musculus)
Cytoplasmic Ribosomal Proteins(Mus musculus)
IL-5 Signaling Pathway(Homo sapiens)
Semaphorin interactions(Homo sapiens)
IL-6 signaling Pathway(Mus musculus)
G1 to S cell cycle control(Mus musculus)
Pentose Phosphate Pathway(Mus musculus)
Apoptosis-related network due to altered Notch3 in ovarian cancer(Homo sapiens)
Spinal Cord Injury(Homo sapiens)
Leptin signaling pathway(Homo sapiens)
Signaling of Hepatocyte Growth Factor Receptor(Mus musculus)
Cell Cycle(Homo sapiens)
Diurnally Regulated Genes with Circadian Orthologs(Homo sapiens)
miRNA Biogenesis(Homo sapiens)
Colchicine Metabolic Pathway(Homo sapiens)
Folic Acid Network(Mus musculus)
Influenza A virus infection(Homo sapiens)
miRNA Regulation of DNA Damage Response(Homo sapiens)
Synthesis and Degradation of Ketone Bodies(Mus musculus)
IL-9 Signaling Pathway(Homo sapiens)
Structural Pathway of Interleukin 1 (IL-1)(Homo sapiens)
ErbB Signaling Pathway(Homo sapiens)
Gene regulatory network modelling somitogenesis (Homo sapiens)
Methylation(Mus musculus)
IL-3 Signaling Pathway(Homo sapiens)
Serotonin Receptor 4/6/7 and NR3C Signaling(Homo sapiens)
Non-odorant GPCRs(Mus musculus)
Proteasome Degradation(Homo sapiens)
miR-targeted genes in lymphocytes - TarBase(Homo sapiens)
Corticotropin-releasing hormone(Homo sapiens)
B Cell Receptor Signaling Pathway(Homo sapiens)
Statin Pathway(Homo sapiens)
Amino acid conjugation of benzoic acid(Mus musculus)
EBV LMP1 signaling(Mus musculus)
Hedgehog Signaling Pathway(Mus musculus)
p38 MAPK Signaling Pathway(Homo sapiens)
Gastric acid production(Homo sapiens)
Prostaglandin Synthesis and Regulation(Mus musculus)
TGF Beta Signaling Pathway(Homo sapiens)
Proteasome Degradation(Mus musculus)
MAPK signaling pathway(Mus musculus)
Spinal Cord Injury(Mus musculus)
Heart Development(Mus musculus)
Nucleotide Metabolism(Homo sapiens)
Endochondral Ossification(Homo sapiens)
Selenium metabolism/Selenoproteins(Mus musculus)
Selenium Metabolism and Selenoproteins(Homo sapiens)
Interferon type I signaling pathways(Homo sapiens)
Focal Adhesion(Homo sapiens)
Integrated Breast Cancer Pathway(Homo sapiens)
Leptin Insulin Overlap(Mus musculus)
Trans-sulfuration pathway(Homo sapiens)
IL-7 Signaling Pathway(Mus musculus)
EPO Receptor Signaling(Mus musculus)
Selenium Micronutrient Network(Homo sapiens)
Irinotecan Pathway(Homo sapiens)
Glycogen Metabolism(Mus musculus)
Fatty Acid Biosynthesis(Homo sapiens)
Mitochondrial Gene Expression(Mus musculus)
Tryptophan metabolism(Homo sapiens)
Adipogenesis genes(Mus musculus)
Fatty Acid Omega Oxidation(Mus musculus)
Signal Transduction of S1P Receptor(Homo sapiens)
Regulation of toll-like receptor signaling pathway(Homo sapiens)
Oxidative Stress(Mus musculus)
Alpha 6 Beta 4 signaling pathway(Homo sapiens)
Polyol pathway(Mus musculus)
Biogenic Amine Synthesis(Homo sapiens)
Mitochondrial LC-Fatty Acid Beta-Oxidation(Mus musculus)
Parkin-Ubiquitin Proteasomal System pathway(Homo sapiens)
miR-targeted genes in adipocytes - TarBase(Homo sapiens)
IL17 signaling pathway(Homo sapiens)
Ovarian Infertility Genes(Mus musculus)
Alzheimers Disease(Homo sapiens)
mir34a and TGIF2 in osteoclastogenesis(Homo sapiens)
miR-targeted genes in muscle cell - TarBase(Homo sapiens)
Calcium Regulation in the Cardiac Cell(Mus musculus)
Calcium Regulation in the Cardiac Cell(Homo sapiens)
ACE Inhibitor Pathway(Mus musculus)
Synthesis and Degradation of Ketone Bodies(Homo sapiens)
Heme Biosynthesis(Homo sapiens)
Small Ligand GPCRs(Mus musculus)
SREBF and miR33 in cholesterol and lipid homeostasis(Homo sapiens)
Pentose Phosphate Pathway(Homo sapiens)
Secretion of Hydrochloric Acid in Parietal Cells(Homo sapiens)
Translation Factors(Homo sapiens)
Metastatic brain tumor(Homo sapiens)
One Carbon Metabolism(Homo sapiens)
miRNA regulation of DNA Damage Response(Mus musculus)
Acetylcholine Synthesis(Homo sapiens)
Signaling Pathways in Glioblastoma(Homo sapiens)
Deregulation of Rab and Rab Effector Genes in Bladder Cancer(Homo sapiens)
Kit Receptor Signaling Pathway(Mus musculus)
Effects of Nitric Oxide(Homo sapiens)
Complement Activation, Classical Pathway(Mus musculus)
Neurotransmitter Release Cycle(Homo sapiens)
Butyrate-induced histone acetylation(Homo sapiens)
Acetylcholine Synthesis(Mus musculus)
Metapathway biotransformation(Homo sapiens)
SREBP signalling(Homo sapiens)
Type II diabetes mellitus(Homo sapiens)
Iron uptake and transport(Homo sapiens)
Cytokines and Inflammatory Response (BioCarta)(Mus musculus)
Endochondral Ossification(Mus musculus)
Osteoblast Signaling(Homo sapiens)
GPCRs, Class B Secretin-like(Homo sapiens)
Glucocorticoid & Mineralcorticoid Metabolism(Mus musculus)
PPAR signaling pathway(Mus musculus)
Physiological and Pathological Hypertrophy of the Heart(Homo sapiens)
Catalytic cycle of mammalian FMOs(Homo sapiens)
Cardiac Hypertrophic Response(Homo sapiens)
Estrogen signalling(Mus musculus)
Glutathione metabolism(Homo sapiens)
Cholesterol Biosynthesis(Mus musculus)
Matrix Metalloproteinases(Homo sapiens)
mRNA processing(Mus musculus)
Cytokines and Inflammatory Response(Homo sapiens)
Diurnally Regulated Genes with Circadian Orthologs(Mus musculus)
Primary Focal Segmental Glomerulosclerosis FSGS(Homo sapiens)
Delta-Notch Signaling Pathway(Mus musculus)
Nanoparticle-mediated activation of receptor signaling(Homo sapiens)
Glucuronidation(Homo sapiens)
IL-2 Signaling Pathway(Homo sapiens)
Urea cycle and metabolism of amino groups(Homo sapiens)
Apoptosis Modulation and Signaling(Homo sapiens)
Amino acid conjugation of benzoic acid(Homo sapiens)
Fatty Acid Beta Oxidation(Mus musculus)
Splicing factor NOVA regulated synpatic proteins(Mus musculus)
Alanine and aspartate metabolism(Mus musculus)
Parkinsons Disease Pathway(Homo sapiens)
Heart Development(Homo sapiens)
Striated Muscle Contraction(Mus musculus)
TP53 Network(Homo sapiens)
Globo Sphingolipid Metabolism(Homo sapiens)
IL-3 Signaling Pathway(Mus musculus)
Cytoplasmic Ribosomal Proteins(Homo sapiens)
Peroxisomal beta-oxidation of tetracosanoyl-CoA(Homo sapiens)
Cardiac Progenitor Differentiation(Homo sapiens)
G Protein Signaling Pathways(Mus musculus)
SREBF and miR33 in cholesterol and lipid homeostasis(Mus musculus)
PDGF Pathway(Homo sapiens)
Signaling of Hepatocyte Growth Factor Receptor(Homo sapiens)
Osteoblast(Mus musculus)
TarBasePathway(Homo sapiens)
Arachidonate Epoxygenase Epoxide Hydrolase(Mus musculus)
Osteopontin Signaling(Homo sapiens)
Irinotecan Pathway(Mus musculus)
IL-1 Signaling Pathway(Mus musculus)
Glycine Metabolism(Homo sapiens)
Fatty Acid Omega Oxidation(Homo sapiens)
Insulin Signaling(Homo sapiens)
Mitochondrial LC-Fatty Acid Beta-Oxidation(Homo sapiens)
Oxidative Stress(Homo sapiens)
Insulin Signaling(Mus musculus)
Cori Cycle(Homo sapiens)
Striated Muscle Contraction(Homo sapiens)
Nicotine Activity on Chromaffin Cells(Homo sapiens)
Oxidative phosphorylation(Mus musculus)
Mitochondrial Gene Expression(Homo sapiens)
Oxidative phosphorylation(Homo sapiens)
Serotonin and anxiety-related events(Mus musculus)
Wnt Signaling Pathway and Pluripotency(Homo sapiens)
Interleukin-11 Signaling Pathway(Homo sapiens)
Serotonin Receptor 2 and ELK-SRF/GATA4 signaling(Homo sapiens)
Hypothetical Network for Drug Addiction(Mus musculus)
Odorant GPCRs(Mus musculus)
DNA Replication(Mus musculus)
Adipogenesis(Homo sapiens)
Hedgehog Signaling Pathway(Homo sapiens)
Retinol metabolism(Mus musculus)
Toll-like receptor signaling pathway(Homo sapiens)
GPCRs, Class A Rhodopsin-like(Homo sapiens)
Regulation of Actin Cytoskeleton(Mus musculus)
Quercetin and Nf-kB/ AP-1 induced cell apoptosis(Homo sapiens)
Wnt Signaling Pathway Netpath(Homo sapiens)
GPCRs, Other(Homo sapiens)
Regulation of Actin Cytoskeleton(Homo sapiens)
Leptin and adiponectin(Mus musculus)
Estrogen metabolism(Mus musculus)
Pathogenic Escherichia coli infection(Homo sapiens)
Nuclear Receptors(Mus musculus)
PodNet: protein-protein interactions in the podocyte(Mus musculus)
DNA Damage Response(Homo sapiens)
TCA Cycle(Mus musculus)
Heme Biosynthesis(Mus musculus)
RalA downstream regulated genes(Homo sapiens)
Small Ligand GPCRs(Homo sapiens)
Apoptosis Modulation by HSP70(Homo sapiens)
Fatty acid oxidation(Mus musculus)
miR-targeted genes in leukocytes - TarBase(Homo sapiens)
Arrhythmogenic Right Ventricular Cardiomyopathy(Homo sapiens)
Glycolysis and Gluconeogenesis(Homo sapiens)
Selenium Micronutrient Network(Mus musculus)
miR-targeted genes in squamous cell - TarBase(Homo sapiens)
IL-5 Signaling Pathway(Mus musculus)
Dopminergic Neurogenesis(Homo sapiens)
Blood Clotting Cascade(Mus musculus)
Gastric cancer network 1(Homo sapiens)
One Carbon Metabolism(Mus musculus)
Nicotine Metabolism(Homo sapiens)
IL-4 Signaling Pathway(Homo sapiens)
NLR Proteins(Homo sapiens)
Non-homologous end joining(Mus musculus)
Matrix Metalloproteinases(Mus musculus)
Iron metabolism in placenta(Homo sapiens)
Metapathway biotransformation(Mus musculus)
Integrin-mediated Cell Adhesion(Mus musculus)
Nuclear Receptors(Homo sapiens)
Fatty Acid Beta Oxidation(Homo sapiens)
Nicotine Activity on Dopaminergic Neurons(Homo sapiens)
MAPK Cascade(Homo sapiens)
Glutathione metabolism(Mus musculus)
mRNA Processing(Homo sapiens)
Nucleotide GPCRs(Homo sapiens)
Type III interferon signaling(Homo sapiens)
FAS pathway and Stress induction of HSP regulation(Mus musculus)
Homologous recombination(Mus musculus)
Mismatch repair(Homo sapiens)
MicroRNAs in Cardiomyocyte Hypertrophy(Mus musculus)
Complement and Coagulation Cascades(Homo sapiens)
ATM Signaling Pathway(Homo sapiens)
Oncostatin M Signaling Pathway(Homo sapiens)
Alanine and aspartate metabolism(Homo sapiens)
Cholesterol Biosynthesis(Homo sapiens)
Angiogenesis(Homo sapiens)
DNA Replication(Homo sapiens)
Eukaryotic Transcription Initiation(Homo sapiens)
MAPK Signaling Pathway(Homo sapiens)
Translation Factors(Mus musculus)
Sulindac Metabolic Pathway(Homo sapiens)
Myometrial Relaxation and Contraction Pathways(Homo sapiens)
Membrane Trafficking(Homo sapiens)
Macrophage markers(Mus musculus)
Aflatoxin B1 metabolism(Mus musculus)
Myometrial Relaxation and Contraction Pathways(Mus musculus)
Eukaryotic Transcription Initiation(Mus musculus)
RANKL/RANK Signaling Pathway(Homo sapiens)
Extracellular vesicle-mediated signaling in recipient cells(Homo sapiens)
Folate-Alcohol and Cancer Pathway(Homo sapiens)
Non-homologous end joining(Homo sapiens)
Ovarian Infertility Genes(Homo sapiens)
Iron Homeostasis(Mus musculus)
Type II interferon signaling (IFNG)(Homo sapiens)
Peptide GPCRs(Homo sapiens)
Eicosanoid Synthesis(Homo sapiens)
Estrogen signaling pathway(Homo sapiens)
IL-7 Signaling Pathway(Homo sapiens)
IL-6 signaling pathway(Homo sapiens)
Aryl Hydrocarbon Receptor(Homo sapiens)
Differentiation Pathway(Homo sapiens)
Glucocorticoid & Mineralcorticoid Metabolism(Homo sapiens)
TSLP Signaling Pathway(Homo sapiens)
Thyroxine (Thyroid Hormone) Production(Homo sapiens)
Phase I biontransformations, non P450(Mus musculus)
Oxidation by Cytochrome P450(Homo sapiens)
Amyotrophic lateral sclerosis (ALS)(Homo sapiens)
Benzo(a)pyrene metabolism(Homo sapiens)
TGF Beta Signaling Pathway(Mus musculus)
Neurotransmitter Clearance In The Synaptic Cleft(Homo sapiens)
TFs Regulate miRNAs related to cardiac hypertrophy(Homo sapiens)
Electron Transport Chain(Mus musculus)
Alzheimers Disease(Mus musculus)
TCA Cycle(Homo sapiens)
Wnt Signaling Pathway NetPath(Mus musculus)
Wnt Signaling Pathway and Pluripotency(Mus musculus)
EGFR1 Signaling Pathway(Mus musculus)
PCSK9-mediated LDLR degradation(Homo sapiens)
Monoamine GPCRs(Homo sapiens)
Integrated Cancer pathway(Homo sapiens)
Arylamine metabolism(Homo sapiens)
Notch Signaling Pathway(Homo sapiens)
Ganglio Sphingolipid Metabolism(Homo sapiens)
Monoamine Transport(Homo sapiens)
Hematopoietic Stem Cell Differentiation(Homo sapiens)
Glucuronidation(Mus musculus)
Glycerophospholipid Biosynthetic Pathway(Homo sapiens)
ACE Inhibitor Pathway(Homo sapiens)
ErbB signaling pathway(Mus musculus)
miRs in Muscle Cell Differentiation(Homo sapiens)
Kennedy pathway(Mus musculus)
BMP Signalling and Regulation(Homo sapiens)
Amino Acid metabolism(Mus musculus)
GPCRs, Class C Metabotropic glutamate, pheromone(Mus musculus)
Nuclear receptors in lipid metabolism and toxicity(Mus musculus)
Toll Like Receptor signaling(Mus musculus)
Osteoclast(Mus musculus)
NLR Proteins(Mus musculus)
miR-targeted genes in epithelium - TarBase(Homo sapiens)
TOR Signaling(Homo sapiens)
Arachidonate Epoxygenase / Epoxide Hydrolase(Homo sapiens)
Statin Pathway(Mus musculus)
Drug Induction of Bile Acid Pathway(Homo sapiens)
TNF-alpha NF-kB Signaling Pathway(Mus musculus)
Serotonin Transporter Activity(Homo sapiens)
Lidocaine metabolism(Homo sapiens)
Keap1-Nrf2(Mus musculus)
Signal Transduction of S1P Receptor(Mus musculus)
Integrated Pancreatic Cancer Pathway(Homo sapiens)
p38 MAPK Signaling Pathway(Mus musculus)
Histone Modifications(Homo sapiens)
Apoptosis Modulation by HSP70(Mus musculus)
Inflammatory Response Pathway(Mus musculus)
Codeine and Morphine Metabolism(Homo sapiens)
Serotonin Receptor 2 and STAT3 Signaling(Homo sapiens)
Triacylglyceride Synthesis(Homo sapiens)
DNA Damage Response (only ATM dependent)(Homo sapiens)
Notch Signaling Pathway(Mus musculus)
Dopminergic Neurogenesis(Mus musculus)
Blood Clotting Cascade(Homo sapiens)
XPodNet - protein-protein interactions in the podocyte expanded by STRING(Mus musculus)
TCR Signaling Pathway(Homo sapiens)
Neural retinal development(Mus musculus)
Nuclear Receptors in Lipid Metabolism and Toxicity(Homo sapiens)
Methylation Pathways(Homo sapiens)
Vitamin B12 Metabolism(Homo sapiens)
Exercise-induced Circadian Regulation(Mus musculus)
Phase I biotransformations, non P450(Homo sapiens)
Folate Metabolism(Homo sapiens)
GPCRs, Other(Mus musculus)
PluriNetWork(Mus musculus)
Kit receptor signaling pathway(Homo sapiens)
GPCRs, Class A Rhodopsin-like(Mus musculus)
G1 to S cell cycle control(Homo sapiens)
EGF/EGFR Signaling Pathway(Homo sapiens)
Complement and Coagulation Cascades(Mus musculus)
Type II interferon signaling (IFNG)(Mus musculus)
Neural Crest Differentiation(Homo sapiens)
Focal Adhesion(Mus musculus)
GPCRs, Class C Metabotropic glutamate, pheromone(Homo sapiens)
EBV LMP1 signaling(Homo sapiens)
Tryptophan metabolism(Mus musculus)
One carbon donor(Homo sapiens)
MicroRNAs in cardiomyocyte hypertrophy(Homo sapiens)
Steroid Biosynthesis(Mus musculus)
Pilocytic astrocytoma(Homo sapiens)
Synaptic Vesicle Pathway(Homo sapiens)
Hypertrophy Model(Homo sapiens)
Aflatoxin B1 metabolism(Homo sapiens)
AGE/RAGE pathway(Homo sapiens)
Regulation of Microtubule Cytoskeleton(Homo sapiens)
Alpha6-Beta4 Integrin Signaling Pathway(Mus musculus)
Wnt Signaling Pathway(Mus musculus)
Steroid Biosynthesis(Homo sapiens)
Purine metabolism(Mus musculus)
Orphan GPCRs(Mus musculus)
TSH signaling pathway(Homo sapiens)
Monoamine GPCRs(Mus musculus)
Eicosanoid Synthesis(Mus musculus)
Nucleotide Metabolism(Mus musculus)
Endothelin Pathways(Homo sapiens)
T-Cell Receptor and Co-stimulatory Signaling(Homo sapiens)
SRF and miRs in Smooth Muscle Differentiation and Proliferation(Homo sapiens)
Homologous recombination(Homo sapiens)
Oxidative Damage(Mus musculus)
Oxidation by Cytochrome P450(Mus musculus)
NOD pathway(Homo sapiens)
Androgen receptor signaling pathway(Homo sapiens)
NAD Biosynthesis II (from tryptophan)(Homo sapiens)
Nucleotide GPCRs(Mus musculus)
Glial Cell Differentiation(Homo sapiens)
MAPK Cascade(Mus musculus)
IL-1 signaling pathway(Homo sapiens)
Inflammatory Response Pathway(Homo sapiens)
Fatty Acid Biosynthesis(Mus musculus)
IL-9 Signaling Pathway(Mus musculus)