Wikipathways PFOCR Dataset

Description sets of genes extracted from pathway figure using optical character recognition
Measurement association by literature curation
Association protein-pathway associations extracted from figures in published literature
Category structural or functional annotations
Resource Wikipathways
Citation(s)
Last Updated 2023 May 25
Stats
  1. 13173 genes
  2. 35464 pathways
  3. 307416 gene-pathway associations

Data Access

API
Script

Visualizations

  • Gene Attribute

  • Gene Similarity

  • Attribute Similarity

  • UMAP

pathway Gene Sets

35464 sets of proteins participating in pathways from the Wikipathways PFOCR dataset.

Gene Set Description
PMC100005__F11
PMC101242__F7
PMC101920__F1
PMC102186__F9
PMC102215__F1
PMC1052008__F1
PMC1052008__F3
PMC1064894__F3
PMC1065305__F1
PMC1069556__F6
PMC1069621__F5
PMC1082717__F1
PMC1083688__F2
PMC1083933__F2
PMC1087229__F8
PMC1087506__F8
PMC1087583__F5
PMC1087795__F1
PMC108819__F8
PMC1088370__F1
PMC108887__F9
PMC1090600__F5
PMC109251__F9
PMC111167__F1
PMC1120573__F4
PMC1124928__F4
PMC1133795__F3
PMC1133850__F10
PMC1134761__F4
PMC1134985__F3
PMC1138975__S1
PMC1138975__S2
PMC1140402__F2
PMC1142215__F2
PMC1143566__F2
PMC1143566__F4
PMC114459__F1
PMC115962__F5
PMC1160519__F6
PMC116060__F6
PMC1168613__F1
PMC1168797__F7
PMC1168814__F8
PMC1169236__F2
PMC1172066__F8
PMC1173149__F10
PMC1174965__F4
PMC1175050__F1
PMC1176393__F2
PMC1176468__F9
PMC1180390__F5
PMC1182485__F8
PMC1183194__F4
PMC1183194__F5
PMC1183194__F6
PMC1183479__F8
PMC1186689__S1
PMC1186734__F6
PMC1190322__F10
PMC1190355__F8
PMC1193534__F1
PMC1193608__F8
PMC1195384__F2
PMC1195968__F1
PMC1197416__F6
PMC1199368__F5
PMC1201250__F7
PMC1201344__F4
PMC1201361__F6
PMC1201394__F4
PMC1201514__F1
PMC120783__F7
PMC1215521__F7
PMC1216340__F10
PMC122866__F4
PMC1234333__F7
PMC1235815__F7
PMC1236692__F3
PMC1236696__F1
PMC1236698__F2
PMC1236700__F2
PMC123677__F3
PMC1237009__F1
PMC1237076__F7
PMC124938__F7
PMC125938__F8
PMC126023__F7
PMC126171__F5
PMC1262773__F4
PMC1280267__F7
PMC128142__F1
PMC1287678__F9
PMC1288263__F2
PMC1288546__F1
PMC128926__F2
PMC129737__F5
PMC1297571__F6
PMC1297590__F2
PMC1297640__F1
PMC1297683__F3
PMC1304358__F3
PMC1304643__F2
PMC1307592__F2
PMC1307593__F2
PMC1312313__F8
PMC1315902__F2
PMC1316260__F3
PMC1316260__F6
PMC1322299__F1
PMC1323499__F1
PMC1326163__F4
PMC1326326__F3
PMC1327675__F3
PMC1327682__F3
PMC133602__F6
PMC134648__F8
PMC1350949__F7
PMC1351030__F8
PMC1351175__F11
PMC1351245__F1
PMC1352320__F1
PMC1356334__F7
PMC1359062__F1
PMC1361361__F7
PMC136456__F7
PMC1369209__F3
PMC137067__F1
PMC137069__F1
PMC1371031__F4
PMC137498__F6
PMC1375233__F2
PMC1375233__F5
PMC1380241__F1
PMC1382215__F1
PMC1383482__F1
PMC1383515__F6
PMC1383550__F2
PMC1383660__F5
PMC1383660__F6
PMC1383714__F8
PMC1386115__F3
PMC1386711__F4
PMC138687__F1
PMC138693__F2
PMC138723__F1
PMC138773__F1
PMC138838__F1
PMC1389768__F1
PMC1390683__F2
PMC139100__F8
PMC139153__F1
PMC139401__F2
PMC139433__F2
PMC1395315__F1
PMC1395315__F5
PMC1397816__F1
PMC1397816__F2
PMC1397816__F5
PMC139817__F7
PMC139865__F12
PMC140043__F8
PMC140192__F7
PMC140507__F1
PMC140665__F8
PMC140731__F6
PMC1409799__F4
PMC1410746__F3
PMC1410804__F7
PMC1413672__F6
PMC1413813__F8
PMC1415320__F6
PMC1420312__F5
PMC1421247__F3
PMC1421301__F1
PMC1421310__F1
PMC1431703__F5
PMC1431720__F7
PMC1434604__F1
PMC1435694__F1
PMC1435944__F6
PMC1436036__F12
PMC1440308__F6
PMC1440308__F7
PMC1440398__F2
PMC1440856__F1
PMC1446957__F5
PMC1447421__F10
PMC1448211__F7
PMC1449579__F5
PMC1449671__F4
PMC1450137__F4
PMC1456930__F5
PMC1456973__F6
PMC1464269__F1
PMC1475580__F1
PMC1475884__F2
PMC1479092__F1
PMC1479345__F3
PMC1479345__F4
PMC1479345__F5
PMC1479345__F6
PMC1479345__F7
PMC1479816__F3
PMC1480427__F1
PMC1480599__F7
PMC1481516__F2
PMC1481658__F11
PMC1482580__F4
PMC1482699__F5
PMC1483059__F10
PMC1483149__F1
PMC1483167__F1
PMC1487177__F7
PMC1489534__F3
PMC14940__F10
PMC149906__F5
PMC1501017__F2
PMC1501125__F1
PMC1502028__F4
PMC1502396__F1
PMC1502426__F1
PMC1502453__F5
PMC1502529__F6
PMC1503662__F7
PMC150381__F2
PMC1508148__F1
PMC150988__F1
PMC151022__F1
PMC151039__F1
PMC151063__F9
PMC151138__F1
PMC151255__F5
PMC151358__F5
PMC151822__F2
PMC1522081__F7
PMC1525002__F4
PMC1525228__F9
PMC1525234__F6
PMC1526532__F1
PMC1526546__F1
PMC1526596__F1
PMC1526619__F1
PMC1526619__F2
PMC152905__F6
PMC1533821__F2
PMC153558__F3
PMC153613__F4
PMC1538848__F3
PMC1539153__F6
PMC1550314__S1
PMC1550774__F6
PMC1551980__F1
PMC1551980__F3
PMC1551980__F4
PMC155294__F4
PMC1553197__F8
PMC155330__F7
PMC1553448__F7
PMC155355__F7
PMC155392__F3
PMC1555642__F1
PMC1555658__F2
PMC155638__F1
PMC155638__F3
PMC1557712__F2
PMC1557825__F4
PMC1559555__F1
PMC1559676__F1
PMC1560089__F7
PMC1564158__F2
PMC1564204__F6
PMC156758__F1
PMC156764__F1
PMC1569532__F1
PMC1570177__F1
PMC1571066__F2
PMC1571066__F5
PMC1571327__F6
PMC1572165__F3
PMC1573858__F1
PMC1574111__F3
PMC1579207__F1
PMC1579207__F3
PMC1584297__F9
PMC15871__F3
PMC1592599__F1
PMC1592643__F3
PMC1594921__F5
PMC1594921__F6
PMC15989__F4
PMC1599906__F3
PMC1599931__F1
PMC1600679__F7
PMC1601944__F1
PMC1601945__F1
PMC1601946__F1
PMC1602337__F9
PMC1603666__F9
PMC1609106__F8
PMC1609340__F1
PMC1616944__F1
PMC1617297__F2
PMC1618798__F2
PMC1618798__F3
PMC1622797__F5
PMC1622889__F1
PMC1635984__F3
PMC1636619__F8
PMC1636849__F8
PMC164216__F5
PMC165090__F8
PMC16561__F6
PMC1664647__F1
PMC1664664__F2
PMC1664665__F2
PMC1665458__F7
PMC1667087__F9
PMC167103__F4
PMC1679905__F6
PMC1681468__F5
PMC1681468__F6
PMC1681473__F1b
PMC1681476__F1
PMC1682009__F1
PMC1682015__F2
PMC1682017__F4
PMC1682017__F5
PMC1683566__F5
PMC1698511__F3
PMC1698524__F5
PMC1698527__F10
PMC1698636__F6
PMC1698810__F8
PMC1698952__F4
PMC1705513__F1
PMC1705980__F2
PMC1716201__F1
PMC1716221__F1
PMC1728094__F1
PMC17313__F1
PMC17314__F1
PMC1751079__F1
PMC1751493__F2
PMC1754372__F2
PMC1756898__F1
PMC175791__F10
PMC1761701__F10
PMC1763171__F2
PMC1764624__F1
PMC1766780__F2
PMC1766919__F1
PMC1767116__F3
PMC1768457__F1
PMC1769518__F1
PMC1769521__F2
PMC1773546__F3
PMC1774081__F6
PMC1774101__F4
PMC1774275__F2
PMC1774275__F3
PMC1774275__F4
PMC1774275__F5
PMC1774279__F1
PMC1774601__F2
PMC1774670__F2
PMC1774670__F6
PMC1774677__F1
PMC1774725__F1
PMC1775040__F2
PMC1779520__F3
PMC1779567__F6
PMC1779657__F2
PMC1779900__F6
PMC1781062__F1
PMC1781473__F3
PMC1781924__F1
PMC1782125__F2
PMC1782267__F1
PMC1782267__F2
PMC1782438__F2
PMC1782564__F6
PMC1782589__F2
PMC1782589__F3
PMC1782796__F7
PMC1783068__F1
PMC1783401__F6
PMC1783691__F1
PMC1783691__F2
PMC1783693__F3
PMC1783813__F3
PMC1785270__F6
PMC1785339__F4
PMC1794588__F3
PMC1796761__F1
PMC1797301__F1
PMC1797633__F1
PMC1798432__F8
PMC1800873__F1
PMC1804347__F4
PMC1805736__F6
PMC1808970__F3
PMC1815248__F5
PMC1817693__F4
PMC1817784__F2
PMC1817805__F2
PMC1819569__F6
PMC1820632__F1
PMC1820751__F3
PMC1820908__F8
PMC182218__F2
PMC1828071__F3
PMC1828071__F1a
PMC1828071__F2
PMC1828075__F2
PMC1828403__F1
PMC1828869__F2
PMC1829400__F5
PMC1829419__F4
PMC1832150__F1
PMC1832185__F2
PMC183833__F2
PMC1838573__F1
PMC1838942__F1
PMC1839818__F8
PMC1839882__F9
PMC1839891__F1
PMC1839891__F10
PMC1847380__F14
PMC1847380__F15
PMC1847401__F4
PMC1847591__F1
PMC1850660__F1
PMC1850774__F5
PMC1851054__F6
PMC1851929__F8
PMC1851974__F2
PMC1852210__F1
PMC1852238__F1
PMC185249__F3
PMC185249__F4
PMC1852551__F4
PMC1852708__F6
PMC1852742__F2
PMC1852756__F2
PMC1852792__F6
PMC1852964__F2
PMC1853294__F10
PMC1854955__F7
PMC1855985__F1
PMC1855986__F9
PMC1856251__F3
PMC1856765__F3
PMC1856765__F7
PMC1856802__F5
PMC1857250__F2
PMC1857267__F2
PMC1857308__F9
PMC1859939__F5
PMC1860011__F2
PMC1860037__F1
PMC1860592__F2
PMC1862519__F1
PMC186326__F7
PMC186370__F1
PMC1866211__F1
PMC1866250__F7
PMC1867237__F3
PMC1869626__F2
PMC1869627__F2
PMC1874671__F2
PMC187486__F8
PMC1876599__F3
PMC1876696__F1
PMC1877048__F1
PMC1877091__F15
PMC1878539__F1
PMC1884140__F11
PMC1885790__F3
PMC1885811__F4
PMC1885837__F6
PMC1885990__F1
PMC1890373__F2
PMC1890551__F1
PMC1890551__F4
PMC1891745__F1
PMC1892100__F1
PMC1892626__F3
PMC1894940__F5
PMC1894978__F5
PMC1895551__F1
PMC1895802__F1
PMC1895816__F2
PMC1896000__F3
PMC1896004__F4
PMC1899305__F7
PMC1899380__F1
PMC1899901__F6
PMC1899924__F8
PMC1899931__F8
PMC1899986__F8
PMC1900132__F1
PMC1904229__F12
PMC1904333__F2
PMC1904449__F3
PMC1905066__F5
PMC1905373__F7
PMC1905729__F1
PMC1905845__S1
PMC1913098__F1
PMC1913583__F1
PMC1914109__F8
PMC1919358__F5
PMC1924866__F5
PMC1924866__F6
PMC1929113__F6
PMC1933158__F6
PMC1933372__F3
PMC1934395__F2
PMC1934514__F2
PMC1934514__F4
PMC1934518__F2
PMC1936363__F1
PMC1937523__F3
PMC1937548__F4
PMC193774__F3
PMC19384__F10
PMC193872__F3
PMC1939900__F6
PMC1940051__F2
PMC1948012__F10
PMC1949901__F1
PMC1951379__F6
PMC1951533__F14
PMC1951751__F10
PMC1951772__F8
PMC1952166__F1
PMC1952230__F1
PMC1952634__F4
PMC1952636__F9
PMC1952644__F1
PMC1952649__F2
PMC1955177__F3
PMC1955758__F2
PMC1958996__F2
PMC1959234__F1
PMC195990__F5
PMC196255__F1a
PMC1963413__F1
PMC1963416__F1
PMC1964512__F3
PMC1964754__F6
PMC1964795__F5
PMC1965265__F6
PMC1971124__F4
PMC1974879__F1
PMC1974887__F1
PMC1975829__F1
PMC1976331__F1
PMC1978064__F4
PMC198547__F8
PMC1986651__F1
PMC1986780__F2
PMC1988867__F7
PMC1991338__F1
PMC199181__F1
PMC199181__F2
PMC199181__F3
PMC1992444__F3
PMC1992519__F2
PMC1993849__F7
PMC1993861__F7
PMC1993906__F16
PMC1994616__F1
PMC1994616__F2
PMC1995566__F7
PMC1995599__F2
PMC1998879__F2
PMC1998884__F1
PMC1999497__F2
PMC2000337__F7
PMC2000831__F3
PMC2002564__F1
PMC2002614__F9
PMC20092__F5
PMC2013735__F4
PMC2013861__F4
PMC2014644__F2
PMC2039930__F7
PMC2040031__F1
PMC2040891__F5
PMC2042021__F6
PMC2042025__F3
PMC2042178__F2
PMC2043390__F9
PMC2043401__F1
PMC20438__F5
PMC20445__F6
PMC2045534__F6
PMC2045624__F1
PMC2048738__F1
PMC2063509__F1
PMC2063513__F6
PMC2063536__F7
PMC2063755__F1
PMC2063819__F7
PMC2064427__F10
PMC2064670__F5
PMC2064840__F9
PMC2066195__F10
PMC206993__F9
PMC2071927__F2
PMC2075035__F2
PMC2075035__F4
PMC2075101__F1
PMC2075270__F1
PMC2077852__F3
PMC2077853__F9
PMC2078333__F1
PMC2080843__F5
PMC2080907__F8
PMC2082051__F5
PMC2082128__F7
PMC2083698__F6
PMC208733__F1
PMC2089068__F3
PMC2089068__F4
PMC209288__F1
PMC2093951__F9
PMC209410__F1
PMC209410__F2
PMC2094118__F1
PMC2094129__F2
PMC209413__F1
PMC209477__F2
PMC209479__F1
PMC209479__F2
PMC2096753__F1
PMC2097959__F2
PMC2099483__F1
PMC2099624__F9
PMC2100073__F6
PMC2100342__F3
PMC2100400__F2
PMC2100434__F2
PMC2106361__F1
PMC2106369__F1
PMC2118167__F7
PMC2118421__F7
PMC2121320__F2
PMC2128044__F12
PMC2131730__F4
PMC2133163__F6
PMC2134838__F2
PMC2134905__F2
PMC2136409__F7
PMC2136409__F8a
PMC213796__F7
PMC2140184__F2
PMC2147077__F4
PMC2147675__F1
PMC2148057__F5
PMC2148057__F6
PMC2148057__F8
PMC2148066__F6
PMC2149843__F1
PMC2150790__F9
PMC2151350__F2
PMC2151384__F2
PMC2151841__F4
PMC2151969__F4
PMC2151969__F5
PMC2153436__F4
PMC2153443__F8
PMC2168342__F7
PMC2168724__F1
PMC2168916__F7
PMC2169053__F6
PMC2169177__F10
PMC2171390__F7
PMC2171731__F9
PMC2172299__F8
PMC2172900__F9
PMC2173020__F1
PMC2173577__F9
PMC2173691__F7
PMC2173816__F3
PMC2173906__F7
PMC2174844__F8
PMC2174913__F2
PMC2174972__F7
PMC2175514__F5
PMC2175514__F9
PMC2176131__F7
PMC2180215__F1
PMC2180420__F9
PMC2192627__F1
PMC2193446__F7
PMC2193492__F1
PMC2194118__F6
PMC2194763__F5
PMC219483__F1
PMC2195651__F1
PMC2195865__F1
PMC2195911__F10
PMC2196458__F7
PMC2198843__F1
PMC2202913__F1
PMC2203613__F10
PMC2206000__F2
PMC2206598__F4
PMC2211462__F3
PMC2211634__F3
PMC2212135__F6
PMC2212359__F5
PMC2212850__F2
PMC2213034__F8
PMC2213056__F1
PMC2213208__F1
PMC2213224__F8
PMC2214701__F3
PMC2215765__F1
PMC2217489__F4
PMC2219351__F1
PMC2219551__F7
PMC2220082__F2
PMC2223843__F2
PMC2224366__F9
PMC2224586__F3
PMC2224766__F3
PMC2225459__F2
PMC2225983__F3
PMC2228275__F3
PMC2230095__F8
PMC2230579__F10
PMC2233667__F6
PMC2233890__F4
PMC2234347__F2
PMC2234385__F10
PMC2234434__F3
PMC2234581__F8
PMC2235195__F1
PMC2235216__F1
PMC22365__F5
PMC2238720__F2
PMC2238789__F2
PMC2238789__F3
PMC2238789__F4
PMC2238789__F5
PMC2238877__F4
PMC2241839__F3
PMC2242658__F8
PMC2242712__F1
PMC2242750__F1
PMC2245955__F5
PMC2246131__F7
PMC2246264__F9
PMC2247392__F2
PMC2248159__F2
PMC2253531__F5
PMC2254474__F1
PMC2254485__F5
PMC2254585__F5
PMC2254980__F3
PMC2254980__F4
PMC2257939__F2
PMC2258259__F1
PMC2258669__F1
PMC2258669__F3
PMC2258989__F6
PMC2259254__F2
PMC2259386__F1
PMC2259464__F2
PMC2259464__F3
PMC2262896__F4
PMC2262896__F6
PMC2263022__F6
PMC2265304__F1
PMC2266095__F2
PMC22667__F1
PMC2266794__F4
PMC2267714__F3
PMC2267731__F2
PMC2268054__F1
PMC2268054__F2
PMC2268064__F2
PMC2268661__F2
PMC2268699__F1
PMC2268699__F2
PMC2268740__F1
PMC2268796__F6
PMC2268956__F3
PMC2268988__F3
PMC2269037__F3
PMC2270353__F4
PMC2270852__F5
PMC2274947__F6
PMC22753__F6
PMC2275788__F2
PMC2276341__F3
PMC2276649__F8
PMC2276852__F7
PMC2276871__F1
PMC2277216__F1
PMC2277398__F1
PMC2277413__F4
PMC2277413__F5
PMC2277498__F3
PMC2278039__F2
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