| Name | AFAP1 antisense RNA 1 |
| Description | This gene produces a long non-coding RNA that is overexpressed in tumor cells and may promote cancer cell metastasis. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n AFAP1‐AS1 is an oncogenic long noncoding RNA that is frequently overexpressed in a wide spectrum of human cancers—including esophageal adenocarcinoma, nasopharyngeal carcinoma, lung cancer, hepatocellular carcinoma, colorectal cancer, osteosarcoma, gallbladder cancer, pancreatic ductal adenocarcinoma, thyroid cancer, and endometrial carcinoma—and its elevated expression correlates with advanced tumor stage, invasion, metastasis, and poor patient prognosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Functional studies indicate that AFAP1‐AS1 promotes cancer cell proliferation, colony formation, migration, invasion, and epithelial–mesenchymal transition through multiple mechanisms. In particular, it modulates actin filament integrity and reorganizes the cell cytoskeleton via regulation of Rho/Rac and small GTPase signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}, {"type": "fg_f", "ref": "5"}, {"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Moreover, AFAP1‐AS1 acts as a competing endogenous RNA, “sponging” tumor suppressor microRNAs to upregulate oncogenic targets such as IGF1R, FGF7, and others."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "14"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additional studies have demonstrated that AFAP1‐AS1 contributes to tumor progression by mediating epigenetic regulation. It recruits chromatin‐modifying enzymes such as EZH2 and LSD1 to the promoters of tumor suppressor genes (for example, p21 and HBP1), thereby repressing their transcription and further promoting oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, the multifaceted functions of AFAP1‐AS1—in enhancing cytoskeletal dynamics, acting as a microRNA sponge to deregulate key oncogenic pathways, and modulating epigenetic landscapes—underscore its critical role in cancer progression and highlight its potential as a prognostic biomarker and therapeutic target."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "17", "end_ref": "20"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wenjing Wu, Tushar D Bhagat, Xue Yang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "LncRNA AFAP1-AS1 contributes to the progression of endometrial carcinoma by regulating miR-545-3p/VEGFA pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Probes (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.mcp.2020.101606"}], "href": "https://doi.org/10.1016/j.mcp.2020.101606"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32504788"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32504788"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Dandan Yin, Xiyi Lu, Jun Su, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA AFAP1-AS1 predicts a poor prognosis and regulates non-small cell lung cancer cell proliferation by epigenetically repressing p21 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cancer (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12943-018-0836-7"}], "href": "https://doi.org/10.1186/s12943-018-0836-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29793547"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29793547"}]}, {"type": "r", "ref": 16, "children": [{"type": "t", "text": "Shanxun Yu, Daolu Yang, Yunyao Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA actin filament-associated protein 1 antisense RNA 1 promotes malignant phenotype through binding with lysine-specific demethylase 1 and repressing HMG box-containing protein 1 in non-small-cell lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.14039"}], "href": "https://doi.org/10.1111/cas.14039"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31069893"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31069893"}]}, {"type": "r", "ref": 17, "children": [{"type": "t", "text": "Xi-Lei Zhou, Wan-Wei Wang, Wei-Guo Zhu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "LncRNA AFAP1-AS1 promotes tumorigenesis and epithelial-mesenchymal transition of osteosarcoma through RhoC/ROCK1/p38MAPK/Twist1 signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-019-1363-0"}], "href": "https://doi.org/10.1186/s13046-019-1363-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31443665"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31443665"}]}, {"type": "r", "ref": 20, "children": [{"type": "t", "text": "Baoyu He, Jianchao Zeng, Wei Chao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Serum long non-coding RNAs MALAT1, AFAP1-AS1 and AL359062 as diagnostic and prognostic biomarkers for nasopharyngeal carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.17083"}], "href": "https://doi.org/10.18632/oncotarget.17083"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28467811"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28467811"}]}]}]}
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| Synonyms | AFAP1AS, AFAP1-AS |
| NCBI Gene ID | 84740 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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AFAP1-AS1 has 705 functional associations with biological entities spanning 5 categories (molecular profile, organism, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.
Click the + buttons to view associations for AFAP1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of AFAP1-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of AFAP1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of AFAP1-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of AFAP1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of AFAP1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with AFAP1-AS1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of AFAP1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at AFAP1-AS1 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of AFAP1-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of AFAP1-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of AFAP1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of AFAP1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of AFAP1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of AFAP1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of AFAP1-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of AFAP1-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of AFAP1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of AFAP1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| KnockTF Gene Expression Profiles with Transcription Factor Perturbations | transcription factor perturbations changing expression of AFAP1-AS1 gene from the KnockTF Gene Expression Profiles with Transcription Factor Perturbations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of AFAP1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at AFAP1-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |