AFDN Gene

Name afadin, adherens junction formation factor
Description This gene encodes a multi-domain protein involved in signaling and organization of cell junctions during embryogenesis. It has also been identified as the fusion partner of acute lymphoblastic leukemia (ALL-1) gene, involved in acute myeloid leukemias with t(6;11)(q27;q23) translocation. Alternatively spliced transcript variants encoding different isoforms have been described for this gene, however, not all have been fully characterized.[provided by RefSeq, May 2011]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n AFDN (afadin) is a key adaptor protein that links nectin family adhesion molecules to the actin cytoskeleton and cooperates with classical cadherins to regulate cell–cell junction assembly and function. In cancer, for example, heterotypic junctions formed between cancer‐associated fibroblasts and tumor cells rely on a mechanically active adhesion where N‐cadherin/E‐cadherin contacts lead to the recruitment of nectins and afadin at the interface; afadin is essential for the subsequent repolarization of the fibroblasts and the reinforcement of adhesion via β‐catenin and α‐catenin/vinculin interactions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the central nervous system, the nectin–afadin system organizes adherens junctions at synapses; here, nectin‐1 and nectin‐3 become asymmetrically localized to the pre‐ and postsynaptic membranes, respectively, with afadin serving to couple these adhesion sites to the actin cytoskeleton. Disruption of this system alters synapse size and number."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Similarly, at Sertoli–spermatid junctions in the testis, the heterotypic interaction between nectin‑2 on Sertoli cells and nectin‑3 on spermatids recruits afadin. This recruitment is critical for the formation and maintenance of a robust junctional actin scaffold, thereby ensuring correct spermatid morphogenesis and positioning."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Anna Labernadie, Takuya Kato, Agustí Brugués, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A mechanically active heterotypic E-cadherin/N-cadherin adhesion enables fibroblasts to drive cancer cell invasion."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb3478"}], "href": "https://doi.org/10.1038/ncb3478"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28218910"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28218910"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Akira Mizoguchi, Hiroyuki Nakanishi, Kazushi Kimura, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nectin: an adhesion molecule involved in formation of synapses."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1083/jcb.200103113"}], "href": "https://doi.org/10.1083/jcb.200103113"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11827984"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11827984"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kumi Ozaki-Kuroda, Hiroyuki Nakanishi, Hiroshi Ohta, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nectin couples cell-cell adhesion and the actin scaffold at heterotypic testicular junctions."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Biol (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/s0960-9822(02)00922-3"}], "href": "https://doi.org/10.1016/s0960-9822(02"}, {"type": "t", "text": "00922-3) PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12121624"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12121624"}]}]}]}
NCBI Gene ID 4301
API
Download Associations
Predicted Functions View AFDN's ARCHS4 Predicted Functions.
Co-expressed Genes View AFDN's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View AFDN's ARCHS4 Predicted Functions.

Functional Associations

AFDN has 5,251 functional associations with biological entities spanning 6 categories (chemical, functional term, phrase or reference, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 37 datasets.

Click the + buttons to view associations for AFDN from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of AFDN gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
Carcinogenome Chemical Perturbation Carcinogenicity Signatures small molecule perturbations changing expression of AFDN gene from the Carcinogenome Chemical Perturbation Carcinogenicity Signatures dataset.
CCLE Cell Line Proteomics Cell lines associated with AFDN protein from the CCLE Cell Line Proteomics dataset.
CM4AI KOLF21J CRISPRi Gene Perturbation Atlas gene perturbations changing expression of AFDN gene from the CM4AI KOLF21J CRISPRi Gene Perturbation Atlas dataset.
CM4AI U2OS Cell Map Protein Localization Assemblies assemblies containing AFDN protein from integrated AP-MS and IF data from the CM4AI U2OS Cell Map Protein Localization Assemblies dataset.
COMPARTMENTS Curated Protein Localization Evidence Scores 2025 cellular components containing AFDN protein from the COMPARTMENTS Curated Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 cellular components containing AFDN protein in low- or high-throughput protein localization assays from the COMPARTMENTS Experimental Protein Localization Evidence Scores 2025 dataset.
COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 cellular components co-occuring with AFDN protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset.
DepMap CRISPR Gene Dependency cell lines with fitness changed by AFDN gene knockdown relative to other cell lines from the DepMap CRISPR Gene Dependency dataset.
DISEASES Curated Gene-Disease Association Evidence Scores 2025 diseases involving AFDN gene from the DISEASES Curated Gene-Disease Association Evidence Scores 2025 dataset.
DISEASES Experimental Gene-Disease Association Evidence Scores 2025 diseases associated with AFDN gene in GWAS datasets from the DISEASES Experimental Gene-Disease Assocation Evidence Scores 2025 dataset.
DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 diseases co-occuring with AFDN gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset.
DisGeNET Gene-Disease Associations diseases associated with AFDN gene in GWAS and other genetic association datasets from the DisGeNET Gene-Disease Associations dataset.
DisGeNET Gene-Phenotype Associations phenotypes associated with AFDN gene in GWAS and other genetic association datasets from the DisGeNET Gene-Phenoptype Associations dataset.
GO Biological Process Annotations 2025 biological processes involving AFDN gene from the curated GO Biological Process Annotations2025 dataset.
GO Cellular Component Annotations 2025 cellular components containing AFDN protein from the curated GO Cellular Component Annotations 2025 dataset.
GO Molecular Function Annotations 2025 molecular functions performed by AFDN gene from the curated GO Molecular Function Annotations 2025 dataset.
GTEx eQTL 2025 SNPs regulating expression of AFDN gene from the GTEx eQTL 2025 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of AFDN gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations 2025 phenotypes associated with AFDN gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset.
JASPAR Predicted Human Transcription Factor Targets 2025 transcription factors regulating expression of AFDN gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset.
JASPAR Predicted Mouse Transcription Factor Targets 2025 transcription factors regulating expression of AFDN gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Mouse Transcription Factor Targets 2025 dataset.
KEGG Pathways 2026 pathways involving AFDN protein from the KEGG Pathways 2026 dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by AFDN gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.
NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles drug perturbations changing expression of AFDN gene from the NIBR DRUG-seq U2OS MoA Box dataset.
PFOCR Pathway Figure Associations 2023 pathways involving AFDN protein from the PFOCR Pathway Figure Associations 2023 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving AFDN protein from the Wikipathways PFOCR 2024 dataset.
Reactome Pathways 2024 pathways involving AFDN protein from the Reactome Pathways 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of AFDN gene from the Rummagene Transcription Factor Associations 2026 dataset.
RummaGEO Drug Perturbation Signatures drug perturbations changing expression of AFDN gene from the RummaGEO Drug Perturbation Signatures dataset.
RummaGEO Gene Perturbation Signatures gene perturbations changing expression of AFDN gene from the RummaGEO Gene Perturbation Signatures dataset.
Sci-Plex Drug Perturbation Signatures drug perturbations changing expression of AFDN gene from the Sci-Plex Drug Perturbation Signatures dataset.
Tahoe Therapeutics Tahoe 100M Perturbation Atlas drug perturbations changing expression of AFDN gene from the Tahoe Therapeutics Tahoe 100M Perturbation Atlas dataset.
TISSUES Curated Tissue Protein Expression Evidence Scores 2025 tissues with high expression of AFDN protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 tissues with high expression of AFDN protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset.
TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 tissues co-occuring with AFDN protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset.
WikiPathways Pathways 2024 pathways involving AFDN protein from the WikiPathways Pathways 2024 dataset.