| Name | AGAP2 antisense RNA 1 |
| Description | Biomarker of lung non-small cell carcinoma; malignant astrocytoma; and stomach cancer. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n AGAP2‐AS1 is emerging as a multifunctional long noncoding RNA that plays an oncogenic role in a wide spectrum of human diseases, particularly in cancer. Elevated levels of AGAP2‐AS1 have been reported in non‐small cell lung cancer, gastric cancer, pancreatic cancer, glioma, glioblastoma, colorectal cancer, papillary thyroid carcinoma, ovarian carcinoma, and laryngeal as well as clear cell renal cell carcinomas, where its high expression correlates with advanced tumor stage, metastasis, poor prognosis, and resistance to therapy."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "9"}]}, {"type": "t", "text": " In contrast, at least one study in epithelial ovarian cancer has demonstrated decreased AGAP2‐AS1 levels associated with more aggressive clinical features, underscoring potential tissue‐specific functions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Mechanistically, AGAP2‐AS1 exerts its oncogenic activity by a variety of means. In several cancer types, it functions as a competing endogenous RNA that sequesters tumor‐suppressive microRNAs—including miR‐15a/b‐5p, miR‐628-5p, miR‐424-5p, miR‐497, and miR‐182-5p—thereby releasing the inhibition on target oncogenic proteins such as HDGF, KLF12, LOXL4, and CFL1."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "11", "end_ref": "14"}]}, {"type": "t", "text": " Additionally, AGAP2‐AS1 has been reported to recruit epigenetic modifiers such as EZH2 and LSD1 to target promoter regions, leading to the transcriptional repression of tumor‐suppressor genes, including KLF2, LATS2, CDKN1A (p21), and E-cadherin."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In colon cancer, feedback interactions with other long noncoding RNAs (for example, LINC-PINT) and modulation of Hippo signaling have been implicated in its pro-proliferative and pro-metastatic effects."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond proliferation, AGAP2‐AS1 contributes to therapeutic resistance. In HER2‐positive breast cancer, its upregulation—partially driven by mesenchymal stem cell interactions—is associated with trastuzumab resistance through its incorporation into exosomes and stabilization of metabolic enzymes such as CPT1."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}, {"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": " Similarly, in lung cancer, AGAP2‐AS1 is linked to radioresistance via modulation of the miR‐296/NOTCH2 axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Moreover, extracellular vesicle-associated AGAP2-AS1 has been shown to promote cervical cancer cell growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "17"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Meta-analyses and gene expression profiling across diverse tumors reinforce the clinical significance of AGAP2‐AS1 as a biomarker predictive of overall survival, disease-free survival, and advanced clinicopathological features."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": " Beyond cancer, dysregulation of AGAP2‐AS1 has been observed in diseases such as psoriasis—where it promotes keratinocyte proliferation via the miR‐424-5p/AKT3 axis—and systemic sclerosis, suggesting a broader role in regulating cell proliferation and apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": " Additionally, AGAP2‐AS1 forms part of prognostic signatures in anaplastic gliomas"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": ", further highlighting its potential as a therapeutic target and biomarker.\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, AGAP2‐AS1 acts as a critical regulator of oncogenic processes through its effects on microRNA sponging, epigenetic modulation, and signal transduction. Its dysregulation not only promotes cell proliferation, migration, invasion, and resistance to apoptosis, but also contributes to therapeutic resistance by facilitating intercellular communication. These diverse functions position AGAP2‐AS1 as a promising biomarker for diagnosis, prognosis, and as a potential target for future therapeutic interventions in cancer and other proliferative diseases."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}, {"type": "fg_f", "ref": "11"}, {"type": "fg_fs", "start_ref": "4", "end_ref": "6"}, {"type": "fg_f", "ref": "22"}, {"type": "fg_fs", "start_ref": "7", "end_ref": "9"}, {"type": "fg_f", "ref": "16"}, {"type": "fg_f", "ref": "13"}, {"type": "fg_f", "ref": "21"}, {"type": "fg_f", "ref": "20"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "W Li, M Sun, C Zang, et al. 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| Synonyms | PUNISHER |
| NCBI Gene ID | 100130776 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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AGAP2-AS1 has 524 functional associations with biological entities spanning 3 categories (chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 16 datasets.
Click the + buttons to view associations for AGAP2-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of AGAP2-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of AGAP2-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of AGAP2-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of AGAP2-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Mutation Profiles | cell lines with AGAP2-AS1 gene mutations from the CCLE Cell Line Gene Mutation Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of AGAP2-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of AGAP2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of AGAP2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of AGAP2-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of AGAP2-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| HPA Cell Line Gene Expression Profiles | cell lines with high or low expression of AGAP2-AS1 gene relative to other cell lines from the HPA Cell Line Gene Expression Profiles dataset. | |
| HPA Tissue Gene Expression Profiles | tissues with high or low expression of AGAP2-AS1 gene relative to other tissues from the HPA Tissue Gene Expression Profiles dataset. | |
| HPA Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of AGAP2-AS1 gene relative to other tissue samples from the HPA Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of AGAP2-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of AGAP2-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of AGAP2-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |