AGPAT4-IT1 Gene

Name AGPAT4 intronic transcript 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n AGPAT4-IT1 is an immune‐related long non‐coding RNA that was incorporated into a prognostic signature for neuroblastoma, demonstrating its potential utility as a biomarker. In the study, AGPAT4-IT1 was one of eleven immune-related lncRNAs combined in the RS_Lnc signature, which, along with a five-gene signature (RS5_G), was used to stratify patients into high- and low-risk groups based on overall and event/progression-free survival outcomes. The findings indicate that higher risk scores—attributed in part to the expression patterns of AGPAT4-IT1 and its companion lncRNAs—correlate with a decrease in activated dendritic cells and CD8+ T cells and an increase in Th2 cells, suggesting an immune microenvironment less favorable for tumor control. Moreover, functional enrichment analyses revealed that these immune-related lncRNAs are predominantly involved in pathways related to both cancer progression and immune regulation. These insights position AGPAT4-IT1 as a promising candidate in the realm of prognostic biomarkers for neuroblastoma, with further experimental and clinical validation needed to fully elucidate its precise biological function and mechanism of action in cancer-associated immune responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiaodan Zhong, Ying Tao, Jian Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prognostic Signature of Immune Genes and Immune-Related LncRNAs in Neuroblastoma: A Study Based on GEO and TARGET Datasets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.631546"}], "href": "https://doi.org/10.3389/fonc.2021.631546"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33767996"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33767996"}]}]}]}
Synonyms NCRNA00241, C6ORF59
Proteins AGIT1_HUMAN
NCBI Gene ID 79992
API
Download Associations
Predicted Functions View AGPAT4-IT1's ARCHS4 Predicted Functions.
Co-expressed Genes View AGPAT4-IT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View AGPAT4-IT1's ARCHS4 Predicted Functions.

Functional Associations

AGPAT4-IT1 has 818 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for AGPAT4-IT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of AGPAT4-IT1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of AGPAT4-IT1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of AGPAT4-IT1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of AGPAT4-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of AGPAT4-IT1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of AGPAT4-IT1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of AGPAT4-IT1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of AGPAT4-IT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at AGPAT4-IT1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of AGPAT4-IT1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of AGPAT4-IT1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of AGPAT4-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of AGPAT4-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of AGPAT4-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of AGPAT4-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of AGPAT4-IT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of AGPAT4-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Curated Protein Localization Annotations cellular components containing AGPAT4-IT1 protein in low- or high-throughput protein localization assays from the LOCATE Curated Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of AGPAT4-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at AGPAT4-IT1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of AGPAT4-IT1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.