ALMS1-IT1 Gene

Name ALMS1 intronic transcript 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n ALMS1‐IT1 is a long non‐coding RNA that appears to have multifaceted roles in both cancer progression and neuroinflammatory processes. In colorectal cancer, ALMS1‐IT1 is one of several ferroptosis‐related lncRNAs whose increased expression is associated with poor patient prognosis, suggesting that it may be involved in pathways critical to tumor survival and progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of cerebral ischemia, ALMS1‐IT1 is rapidly up‐regulated after injury; its knockdown leads to reduced expression of pro‐inflammatory cytokines and improved sensorimotor and spatial learning outcomes through suppression of NF‐κB signaling, indicating a role in modulating neuro-inflammation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In lung adenocarcinoma, overexpression of ALMS1‐IT1, in conjunction with its positively correlated partner AVL9, promotes cancer cell proliferation, migration, and invasion via activation of the cyclin-dependent kinase pathway, pointing to a contribution to malignant progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in head and neck squamous cell carcinoma, ALMS1‐IT1 is included in a multi‑lncRNA risk model where its elevated levels correlate with poorer overall survival and are linked to metabolic as well as immune regulatory pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Finally, in small‑cell lung cancer, ALMS1‐IT1 forms part of a competing endogenous RNA network alongside other lncRNAs and alternative splicing events, underscoring its potential as a biomarker and suggesting a role in the disease’s pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies indicate that ALMS1‐IT1 is a critical regulator of key signaling cascades—including those governing cell cycle progression, inflammatory responses, and metabolic pathways—that drive both tumor progression and neurodegenerative processes. Its consistent association with poor prognosis and aggressive disease features across multiple conditions points to its potential utility as a prognostic biomarker and as a therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Na Li, Jiangli Shen, Ximin Qiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA Signatures Associated with Ferroptosis Predict Prognosis in Colorectal Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Gen Med (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/IJGM.S331378"}], "href": "https://doi.org/10.2147/IJGM.S331378"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35018112"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35018112"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Peng Lu, Ye Zhang, Huanjiang Niu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Upregulated Long Non-coding RNA ALMS1-IT1 Promotes Neuroinflammation by Activating NF-κB Signaling in Ischemic Cerebral Injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Curr Pharm Des (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1381612827666210827104316"}], "href": "https://doi.org/10.2174/1381612827666210827104316"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34455967"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34455967"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Tian Luan, Tian-Ye Zhang, Zhong-Hua Lv, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The lncRNA ALMS1-IT1 may promote malignant progression of lung adenocarcinoma via AVL9-mediated activation of the cyclin-dependent kinase pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "FEBS Open Bio (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/2211-5463.13140"}], "href": "https://doi.org/10.1002/2211-5463.13140"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33683834"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33683834"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Lu Xing, Xiaoqian Zhang, Anwei Chen "}, {"type": "b", "children": [{"type": "t", "text": "Prognostic 4-lncRNA-based risk model predicts survival time of patients with head and neck squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2019.10670"}], "href": "https://doi.org/10.3892/ol.2019.10670"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31452809"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31452809"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Youming Lei, Yunfei Shi, Jin Duan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of alternative splicing and lncRNA genes in pathogenesis of small cell lung cancer based on their RNA sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Adv Clin Exp Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.17219/acem/94392"}], "href": "https://doi.org/10.17219/acem/94392"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31403267"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31403267"}]}]}]}
NCBI Gene ID 100874291
API
Download Associations
Predicted Functions View ALMS1-IT1's ARCHS4 Predicted Functions.
Co-expressed Genes View ALMS1-IT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ALMS1-IT1's ARCHS4 Predicted Functions.

Functional Associations

ALMS1-IT1 has 463 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for ALMS1-IT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of ALMS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of ALMS1-IT1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of ALMS1-IT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ALMS1-IT1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of ALMS1-IT1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.