| Name | AP4B1 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n AP4B1‐AS1 is a long non‐coding RNA that has emerged as a potential gene regulatory mediator in immuno‐related conditions. Notably, in a study on type 1 diabetes, an expression quantitative trait locus (eQTL) tagged by the single nucleotide polymorphism rs6679677 was associated with modulated AP4B1‐AS1 transcript levels in lung tissue, with allele‐specific enhancer activity in lung epithelial cells contributing substantially to T1D risk (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, a separate investigation of the genomic region at 1p13.2—which encompasses AP4B1‐AS1 along with several protein‐coding and non‐coding genes—in patients with pemphigus foliaceus found no significant association with disease susceptibility, suggesting that variation in AP4B1‐AS1 may not play a major role in the pathogenesis of this autoimmune skin disorder."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although other studies have explored the influence of prenatal and perinatal factors on childhood cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and the involvement of diverse non‐coding RNAs in retinal degeneration associated with oxidative stress"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ", AP4B1‐AS1 was not implicated in these contexts. Thus, current evidence supports a specific role for AP4B1‐AS1 in modulating lung tissue gene regulation that may impact T1D development, while its contribution to other diseases remains less defined.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daniel Ho, Denis M Nyaga, William Schierding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identifying the lungs as a susceptible site for allele-specific regulatory changes associated with type 1 diabetes risk."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Commun Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s42003-021-02594-0"}], "href": "https://doi.org/10.1038/s42003-021-02594-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34521982"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34521982"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Sara Cristina Lobo-Alves, Liana Alves de Oliveira, Maria Luiza Petzl-Erler "}, {"type": "b", "children": [{"type": "t", "text": "Region 1p13.2 including the RSBN1, PTPN22, AP4B1 and long non-coding RNA genes does not bear risk factors for endemic pemphigus foliaceus (fogo selvagem)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Immunogenet (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/iji.12423"}], "href": "https://doi.org/10.1111/iji.12423"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30884100"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30884100"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Anna Deleskog, Marcel den Hoed, Giorgio Tettamanti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Maternal diabetes and incidence of childhood cancer - a nationwide cohort study and exploratory genetic analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epidemiol (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/CLEP.S147188"}], "href": "https://doi.org/10.2147/CLEP.S147188"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29238226"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29238226"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Luigi Donato, Concetta Scimone, Carmela Rinaldi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Non-coding RNAome of RPE cells under oxidative stress suggests unknown regulative aspects of Retinitis pigmentosa etiopathogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-018-35086-z"}], "href": "https://doi.org/10.1038/s41598-018-35086-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30413775"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30413775"}]}]}]}
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| NCBI Gene ID | 100287722 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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AP4B1-AS1 has 832 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for AP4B1-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of AP4B1-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of AP4B1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CellMarker Gene-Cell Type Associations | cell types associated with AP4B1-AS1 gene from the CellMarker Gene-Cell Type Associations dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of AP4B1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of AP4B1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of AP4B1-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of AP4B1-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of AP4B1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of AP4B1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of AP4B1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of AP4B1-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |