AQP4-AS1 Gene

Name AQP4 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The long non‐coding antisense RNA AQP4‑AS1 has emerged as a versatile regulator in diverse biological contexts. In diabetic retinopathy, for example, AQP4‑AS1 expression is significantly up‐regulated in patient samples, high glucose‑treated Müller cells, and diabetic retinas in animal models; its silencing alleviates retinal neurodegeneration and vascular dysfunction by modulating the expression of the AQP4 gene (see."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In neuropsychiatric disorders, bioinformatic analyses have identified an AQP4‑AS1–mediated competing endogenous RNA axis that may influence gene regulation in the olfactory epithelium, thereby contributing to schizophrenia pathophysiology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In oncologic settings, genetic studies in breast cancer have linked single nucleotide polymorphisms in AQP4‑AS1 with disease susceptibility and prognosis; its down‑regulation correlates with more aggressive tumors and poorer outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similarly, in gastric cancer, AQP4‑AS1 appears within a regulatory network where its expression is associated with overall survival risk."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Moreover, transcriptome analyses in epileptogenic hippocampal tissues have identified aberrant levels of AQP4‑AS1 among other dysregulated non‑coding RNAs, suggesting a role in neuroinflammation and synaptic modulation in drug‑refractory mesial temporal lobe epilepsy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that AQP4‑AS1 functions as a critical regulatory molecule whose altered expression impacts retinal neurovascular integrity, neuronal gene expression networks, and tumor progression, making it a promising candidate for further investigation as both a biomarker and a therapeutic target across a range of diseases.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiumiao Li, Junya Zhu, Yuling Zhong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Targeting long noncoding RNA-AQP4-AS1 for the treatment of retinal neurovascular dysfunction in diabetes mellitus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EBioMedicine (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ebiom.2022.103857"}], "href": "https://doi.org/10.1016/j.ebiom.2022.103857"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35172268"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35172268"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hani Sabaie, Marziyeh Mazaheri Moghaddam, Madiheh Mazaheri Moghaddam, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA-associated competing endogenous RNA axes in the olfactory epithelium in schizophrenia: a bioinformatics analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-021-04326-0"}], "href": "https://doi.org/10.1038/s41598-021-04326-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34969953"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34969953"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rafael D Marchi, Carolina Mathias, Gabriel A K Reiter, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association between SNP rs527616 in lncRNA AQP4-AS1 and susceptibility to breast cancer in a southern Brazilian population."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genet Mol Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1590/1678-4685-GMB-2020-0216"}], "href": "https://doi.org/10.1590/1678-4685-GMB-2020-0216"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33721012"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33721012"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Chao Xing, Zhengzhai Cai, Jian Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Potential Biomarkers Involved in Gastric Cancer Through Integrated Analysis of Non-Coding RNA Associated Competing Endogenous RNAs Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Lab (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7754/Clin.Lab.2018.180419"}], "href": "https://doi.org/10.7754/Clin.Lab.2018.180419"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30336538"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30336538"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Aparna Banerjee Dixit, Jyotirmoy Banerjee, Arpna Srivastava, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNA-seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2016.04.001"}], "href": "https://doi.org/10.1016/j.ygeno.2016.04.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27094248"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27094248"}]}]}]}
Synonyms CHST9-AS1, C18ORF16
NCBI Gene ID 147429
API
Download Associations
Predicted Functions View AQP4-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View AQP4-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View AQP4-AS1's ARCHS4 Predicted Functions.

Functional Associations

AQP4-AS1 has 1,088 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 29 datasets.

Click the + buttons to view associations for AQP4-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of AQP4-AS1 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of AQP4-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of AQP4-AS1 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of AQP4-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of AQP4-AS1 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of AQP4-AS1 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of AQP4-AS1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of AQP4-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with AQP4-AS1 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at AQP4-AS1 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of AQP4-AS1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of AQP4-AS1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of AQP4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of AQP4-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of AQP4-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with AQP4-AS1 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with AQP4-AS1 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of AQP4-AS1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of AQP4-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain AQP4-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of AQP4-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of AQP4-AS1 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at AQP4-AS1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of AQP4-AS1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.