| Name | ARHGEF38 intronic transcript 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a study of stomach adenocarcinoma, ARHGEF38‐IT1 was identified as one of nine genes in a prognostic signature that is strongly associated with cancer stem cell characteristics, overall survival, and clinical outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " The inclusion of ARHGEF38‐IT1 in this multi‐gene model suggests that its expression may be linked to the regulation of cancer stemness, influencing key tumor cell features such as infinite proliferation, self‐renewal, and dynamic interactions within the tumor immune microenvironment. Moreover, correlations observed between the gene signature (including ARHGEF38‐IT1) with factors such as tumor mutation burden, copy number variations, and immune cell infiltration underscore its potential role in modulating tumor plasticity and the overall tumorigenic process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zaisheng Ye, Miao Zheng, Yi Zeng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bioinformatics Analysis Reveals an Association Between Cancer Cell Stemness, Gene Mutations, and the Immune Microenvironment in Stomach Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.595477"}], "href": "https://doi.org/10.3389/fgene.2020.595477"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33362856"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33362856"}]}]}]}
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| NCBI Gene ID | 100874374 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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ARHGEF38-IT1 has 164 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.
Click the + buttons to view associations for ARHGEF38-IT1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of ARHGEF38-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of ARHGEF38-IT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of ARHGEF38-IT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of ARHGEF38-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of ARHGEF38-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |