ATP2C2-AS1 Gene

Name ATP2C2 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nInositol 1,4,5‐trisphosphate 3-kinase B (Itpkb) is a critical enzyme that phosphorylates IP₃ to generate IP₄, thereby serving as a pivotal regulator of intracellular calcium and phosphoinositide signaling. Structural and biochemical studies have illuminated its mechanisms of autoinhibition and dimerization, and have revealed that, despite the complexity of inositol phosphate metabolism, the production of higher phosphorylated inositol phosphates can occur even in the absence of several Itpk isoenzymes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the immune system, Itpkb plays multifaceted roles. In B lymphocytes, it tempers antigen receptor–induced signaling by generating IP₄, which regulates the subcellular localization of Rasa3 and restrains Erk activation, thereby controlling the expression of the proapoptotic Bim protein—a process essential for B cell survival and tolerance. Similarly, within T cells, Itpkb is indispensable for proper thymocyte differentiation and peripheral T cell function; its deficiency leads to hyperresponsive calcium signaling, aberrant activation and metabolic overdrive via unchecked PI3K/Akt/mTOR cascades, and ultimately results in impaired T cell development and survival. In addition, Itpkb is crucial for maintaining hematopoietic stem cell quiescence, as demonstrated by its ability to limit cytokine-induced metabolic activation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond lymphoid regulation, Itpkb influences other physiological contexts. Its deficiency prompts enhanced proliferation of granulocyte-monocyte progenitors and increased neutrophil production, highlighting a regulatory role in myelopoiesis. In neuronal cells, Itpkb activity modulates endoplasmic reticulum-to-mitochondria calcium flux; by limiting mitochondrial calcium overload, it acts as a negative regulator of α-synuclein aggregation—implicating it in the pathogenesis of sporadic Parkinson’s disease. Furthermore, in dendritic cells, Itpkb is essential for plasma membrane–associated calcium mobilization and the activation of NFAT transcription factors in response to lipopolysaccharide, contributing to inflammatory responses."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "12"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Philip P Chamberlain, Mark L Sandberg, Karsten Sauer, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Inositol 1,3,4,5-tetrakisphosphate controls proapoptotic Bim gene expression and survival in B cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0704312104"}], "href": "https://doi.org/10.1073/pnas.0704312104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17709751"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17709751"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Andrew T Miller, Daniel R Beisner, Daorong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inositol 1,4,5-trisphosphate 3-kinase B is a negative regulator of BCR signaling that controls B cell selection and tolerance induction."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.0802850"}], "href": "https://doi.org/10.4049/jimmunol.0802850"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19342645"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19342645"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yoann Maréchal, Séverine Quéant, Selena Polizzi, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "IP3 3-kinase B controls hematopoietic stem cell homeostasis and prevents lethal hematopoietic failure in mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2014-06-583187"}], "href": "https://doi.org/10.1182/blood-2014-06-583187"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25788703"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25788703"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Andrew T Miller, Carol Dahlberg, Mark L Sandberg, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Non-canonical antagonism of PI3K by the kinase Itpkb delays thymocyte β-selection and renders it Notch-dependent."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.10786"}], "href": "https://doi.org/10.7554/eLife.10786"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26880557"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26880557"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yonghui Jia, Fabien Loison, Hidenori Hattori, et al. 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NCBI Gene ID 105371374
API
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Predicted Functions View ATP2C2-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View ATP2C2-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ATP2C2-AS1's ARCHS4 Predicted Functions.

Functional Associations

ATP2C2-AS1 has 1 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for ATP2C2-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of ATP2C2-AS1 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.