| Name | ATP5MF-PTCD1 readthrough |
| Description | This locus represents naturally occurring read-through transcription between the ATP5J2 (ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2) and PTCD1 (pentatricopeptide repeat domain 1) genes on chromosome 7. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Nov 2010] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The ATP5MF‐PTCD1 gene product plays a critical role in the post‐transcriptional regulation of mitochondrial gene expression. Functional studies indicate that the PTCD1 portion is central to processing and stabilizing mitochondrial RNAs—especially in modulating the 3′ end processing of tRNAs and controlling mitochondrial leucine tRNA levels—which in turn influences the efficiency and coordination of mitochondrial translation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Mouse knockout and haploinsufficiency models further reveal that reduced levels of PTCD1 lead to defects in mitoribosome assembly and respiratory chain biogenesis, which manifest as impaired oxidative phosphorylation. Such mitochondrial dysfunction has been linked to metabolic abnormalities, including adult‐onset obesity, liver steatosis and cardiac hypertrophy, thereby highlighting the integral role of this protein in maintaining energy homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, genetic studies have associated variants in PTCD1 with neurodegenerative diseases such as Alzheimer’s disease, underscoring the broader clinical relevance of mitochondrial RNA regulation in human pathology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although the available abstracts do not explicitly dissect the role of the ATP5MF portion, the ATP5MF‐PTCD1 nomenclature suggests that this locus may integrate features of ATP synthase assembly/function with those of mitochondrial RNA metabolism. In this context, the ATP5MF‐PTCD1 chimeric product is poised to coordinate the energy production machinery with the post‐transcriptional control of mitochondrial gene expression—a critical nexus ensuring effective oxidative phosphorylation and cellular homeostasis.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Maria I G Lopez Sanchez, Tim R Mercer, Stefan M K Davies, et al. "}, {"type": "b", "children": [{"type": "t", "text": "RNA processing in human mitochondria."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Cycle (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4161/cc.10.17.17060"}], "href": "https://doi.org/10.4161/cc.10.17.17060"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21857155"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21857155"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Christof Schild, Dagmar Hahn, André Schaller, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondrial leucine tRNA level and PTCD1 are regulated in response to leucine starvation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Amino Acids (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00726-014-1730-2"}], "href": "https://doi.org/10.1007/s00726-014-1730-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24710704"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24710704"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Kara L Perks, Nicola Ferreira, Tara R Richman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Adult-onset obesity is triggered by impaired mitochondrial gene expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Adv (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/sciadv.1700677"}], "href": "https://doi.org/10.1126/sciadv.1700677"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28835921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28835921"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Kara L Perks, Nicola Ferreira, Judith A Ermer, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Reduced mitochondrial translation prevents diet-induced metabolic dysfunction but not inflammation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.104010"}], "href": "https://doi.org/10.18632/aging.104010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33024056"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33024056"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Judy Pa, Shea J Andrews, Russell H Swerdlow "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondria and Alzheimer's: Is PTCD1 the Smoking Gun?"}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Trends Neurosci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.tins.2019.08.003"}], "href": "https://doi.org/10.1016/j.tins.2019.08.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31421943"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31421943"}]}]}]}
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| NCBI Gene ID | 100526740 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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ATP5MF-PTCD1 has 302 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.
Click the + buttons to view associations for ATP5MF-PTCD1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of ATP5MF-PTCD1 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset. | |
| CCLE Cell Line Proteomics | Cell lines associated with ATP5MF-PTCD1 protein from the CCLE Cell Line Proteomics dataset. | |
| ChEA Transcription Factor Targets 2022 | transcription factors binding the promoter of ATP5MF-PTCD1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets 2022 dataset. | |
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with ATP5MF-PTCD1 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| DISEASES Text-mining Gene-Disease Association Evidence Scores 2025 | diseases co-occuring with ATP5MF-PTCD1 gene in abstracts of biomedical publications from the DISEASES Text-mining Gene-Disease Assocation Evidence Scores 2025 dataset. | |
| GWAS Catalog SNP-Phenotype Associations 2025 | phenotypes associated with ATP5MF-PTCD1 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations 2025 dataset. | |
| JASPAR Predicted Human Transcription Factor Targets 2025 | transcription factors regulating expression of ATP5MF-PTCD1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Human Transcription Factor Targets dataset. | |
| NIBR DRUG-seq U2OS MoA Box Gene Expression Profiles | drug perturbations changing expression of ATP5MF-PTCD1 gene from the NIBR DRUG-seq U2OS MoA Box dataset. | |
| Rummagene Transcription Factor Associations 2026 | transcription factors regulating expression of ATP5MF-PTCD1 gene from the Rummagene Transcription Factor Associations 2026 dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of ATP5MF-PTCD1 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of ATP5MF-PTCD1 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of ATP5MF-PTCD1 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with ATP5MF-PTCD1 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |