ATP6 Gene

Name ATP synthase F0 subunit 6
Description Contributes to proton-transporting ATP synthase activity, rotational mechanism. Involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion. Part of proton-transporting ATP synthase complex. Implicated in Leber hereditary optic neuropathy; NARP syndrome; Parkinson's disease; multiple sclerosis; and systemic lupus erythematosus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n The mitochondrial gene ATP6 encodes a core subunit of the F<sub>1</sub>F<sub>0</sub>-ATP synthase (complex V), playing a vital role in coupling proton transport to ATP production. Variation in ATP6 can modify mitochondrial efficiency and underlie diverse clinical phenotypes. For instance, a specific ATP6 single‐nucleotide polymorphism (SNP 9055A) was associated with a decreased risk of Parkinson disease—an effect more pronounced in women."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, mutations at nucleotide 8993 (T&gt;G and T&gt;C) disrupt ATP synthesis by impairing the assembly and stability of complex V; such defects lead to energy deprivation and increased reactive oxygen species production that contribute to neuropathy, ataxia, retinitis pigmentosa, and the spectrum of neurological dysfunction observed in NARP (Neuropathy, Ataxia and Retinitis Pigmentosa) patients."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, the m.9185T&gt;C mutation in ATP6 has been shown to impair complex V assembly and activity, thereby leading to axonal neuropathies such as Charcot‐Marie‐Tooth disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Finally, high levels of ATP6 mutations correlate with defective ATP synthase function and diminished ATP production, which have been implicated in severe early‐onset disorders, including Leigh syndrome, through impaired complex V stability and efficiency."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n These findings collectively emphasize that ATP6 is essential for optimal oxidative phosphorylation and that its disruption can lead to a wide variety of mitochondrial dysfunctions and neurodegenerative diseases.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Joelle M van der Walt, Kristin K Nicodemus, Eden R Martin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mitochondrial polymorphisms significantly reduce the risk of Parkinson disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/373937"}], "href": "https://doi.org/10.1086/373937"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12618962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12618962"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Giovanni Manfredi, Jin Fu, Joseline Ojaimi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Genet (2002)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ng851"}], "href": "https://doi.org/10.1038/ng851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "11925565"}], "href": "https://pubmed.ncbi.nlm.nih.gov/11925565"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Alessandra Baracca, Gianluca Sgarbi, Marina Mattiazzi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Biochemical phenotypes associated with the mitochondrial ATP6 gene mutations at nt8993."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochim Biophys Acta (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbabio.2007.05.005"}], "href": "https://doi.org/10.1016/j.bbabio.2007.05.005"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17568559"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17568559"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Robert D S Pitceathly, Sinéad M Murphy, Ellen Cottenie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic dysfunction of MT-ATP6 causes axonal Charcot-Marie-Tooth disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurology (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1212/WNL.0b013e3182698d8d"}], "href": "https://doi.org/10.1212/WNL.0b013e3182698d8d"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22933740"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22933740"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Eva Morava, Richard J Rodenburg, Frans Hol, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clinical and biochemical characteristics in patients with a high mutant load of the mitochondrial T8993G/C mutations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Med Genet A (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/ajmg.a.31194"}], "href": "https://doi.org/10.1002/ajmg.a.31194"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16532470"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16532470"}]}]}]}
NCBI Gene ID 4508
API
Download Associations
Predicted Functions View ATP6's ARCHS4 Predicted Functions.
Co-expressed Genes View ATP6's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View ATP6's ARCHS4 Predicted Functions.

Functional Associations

ATP6 has 174 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for ATP6 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles tissue samples with high or low expression of ATP6 gene relative to other tissue samples from the Allen Brain Atlas Aging Dementia and Traumatic Brain Injury Tissue Sample Gene Expression Profiles dataset.
KEGG Pathways 2026 pathways involving ATP6 protein from the KEGG Pathways 2026 dataset.
PFOCR Pathway Figure Associations 2024 pathways involving ATP6 protein from the Wikipathways PFOCR 2024 dataset.
Rummagene Transcription Factor Associations 2026 transcription factors regulating expression of ATP6 gene from the Rummagene Transcription Factor Associations 2026 dataset.
WikiPathways Pathways 2024 pathways involving ATP6 protein from the WikiPathways Pathways 2024 dataset.